FvH4_2g20710
MYB Family

Fanconi anemia group F protein (FANCF)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
OG0006216
Physical Location & Seq
Forward (+)
17307761 .. 17312757
4997 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g20710.t7

Sequence Viewer

Length: 1356 bp
ATGAGTTGGAGCCACCCAGATCTTTCATTGCAAGAATTGATGAAACTGGTTAAAGGATTCGTCGATATACTGATTCTGCTTTCTGGGTACCAATCCTCTGGTCGTCTCGCTCACTGGGACTCCCAGAATATCAAGAAGGCTTTTCAGTGGGGCCTCTTCTTCGAAAATTTTATGGGGAGCTTTAGCAGCTCTGATGATTATGTGGATTCTGTGATGGAACTTGATGGGGCTATTTCTGAAATGACATCTGCTGCTTCTTTCCCTAAGGGTCTTGCACATATGTCAAGTGTGACTCTTGGTACAGCACGGCGTTTTGTGTTGGAGCATCTCATCCATAGTTTACCTTTGAGAGATGCACATTTTAGAGCTTTGCTGACGGCAACTGTGGAGATGGATCTTGAGGAGTTATCAGGAAGTGATAGTGATTTTCTGAATGTGTATCTCAACAAGTTGAAGCTGGAGGATGCACCAATTCAGGAAGGCATTGAGCCGGCTAGAAAGTTTGGAGATTGCGGTGGTGATGGTTTGACTAAGTATGCGGTTCATGAGATCTTGAAGAGGTGGTCTGTGGTTTCTTTGATGGAAACGGTTGAGACAGGCTTGGATGTTGTTTCTCAAAGTGTCAGACATAGCAGTTGGAGTGAGTTTGATGATAACTTATTGAAAGAGCAGCTGAAGTGTGAAAATACTCCAGTGACTGTCGACTGGTTGGTTGGTTGTCTGACATGGAACCGCTGGAAGTCAGATAGCCTCTCGTACTTTCTTGATAAGAGAACTGTTCAATTGGTCTCTGGTGCCAGCTTGGTATTTTCTACCCCTAAGATTCAGTGGGTACAAATTTTCCCACAGTTAAACTTCAATGATTTAGCAGGAGGCAGTGATGATGGTTTGTGCGAAACAATTGAGCTCATGTTACTAGGATGCATTGCAAGCAGATGGACTTCTGTAATCGAGCATTTGGTGTCAGTTTCTTATGATTCTCGCACGATTTTGGAGCAATATCACGAAGTATGCAACTTACTCCAGGGAGAATCTACAACTCTTAGATCTAAACAGGAAGCAATCAGCCAGGAAACTGACATTCTTGAGTATCTGAGTGGAATGCTGGATGGGCATGTGCATCTGTTATGGAAAATCTGCCCAGCTCTTGGAGCCGTTGCAATTCCATTCTGGACACCTTTGTTTAGCCTTTATTTGAGCGAAATTGAGATTCAAGTCAAGGGAGATCTTTCGACAATGAGATGTTGTGACTGTGCTCACAATAGGAAGGAGCACACTGACTGTGAACTTGCTCAGAGAATTTGGTACCTTTACGTTTTTCATGTTTATGGCTCTCGTCCAGTTGCCCATAGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
FANCF Myb_CC_LHEQLE Myb_DNA-binding

Protein Analysis

452

Amino Acids

50.87

Weight (kDa)

5.05

Isoelectric Point (pI)

44.57

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FANCF PF11107 11 - 129 1.1e-09 Fanconi anemia group F protein (FANCF)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 2 cut(s) 87, 1305
AccB1I GGYRCC 3 cut(s) 87, 794, 1305
AccB7I CCANNNNNTGG 1 cut(s) 1148
AccI GTMKAC 1 cut(s) 702
AciI CCGC 3 cut(s) 513, 539, 733
AclWI GGATC 1 cut(s) 402
AcsI RAATTY 3 cut(s) 166, 837, 1299
AcuI CTGAAG 1 cut(s) 695
AfaI GTAC 5 cut(s) 89, 301, 758, 834, 1307
AfiI CCNNNNNNNGG 1 cut(s) 1148
AgsI TTSAA 6 cut(s) 454, 556, 664, 782, 859, 1214
AjnI CCWGG 2 cut(s) 1023, 1068
AluBI AGCT 9 cut(s) 180, 189, 368, 457, 673, 801, 907, 1145, 1353
AluI AGCT 9 cut(s) 180, 189, 368, 457, 673, 801, 907, 1145, 1353
Alw21I GWGCWC 3 cut(s) 909, 1258, 1275
Alw26I GTCTC 3 cut(s) 110, 587, 793
AlwI GGATC 1 cut(s) 402
AlwNI CAGNNNCTG 1 cut(s) 698
AoxI GGCC 1 cut(s) 151
ApeKI GCWGC 3 cut(s) 186, 251, 670
ApoI RAATTY 3 cut(s) 166, 837, 1299
Asp718I GGTACC 2 cut(s) 87, 1305
AspS9I GGNCC 1 cut(s) 151
AsuHPI GGTGA 1 cut(s) 530
AsuII TTCGAA 1 cut(s) 162
AxyI CCTNAGG 1 cut(s) 264
BanI GGYRCC 3 cut(s) 87, 794, 1305
BanII GRGCYC 1 cut(s) 909
Bbv12I GWGCWC 3 cut(s) 909, 1258, 1275
BbvI GCAGC 3 cut(s) 198, 238, 682
BccI CCATC 8 cut(s) 208, 218, 385, 515, 574, 878, 930, 1103
BceAI ACGGC 3 cut(s) 323, 393, 1139
BciT130I CCWGG 2 cut(s) 1025, 1070
BcoDI GTCTC 3 cut(s) 110, 587, 793
BfaI CTAG 2 cut(s) 495, 917
BglII AGATCT 4 cut(s) 19, 549, 1046, 1225
BisI GCNGC 3 cut(s) 187, 252, 671
BlsI GCNGC 3 cut(s) 188, 253, 672
Bme1390I CCNGG 2 cut(s) 1025, 1070
BmgT120I GGNCC 1 cut(s) 151
BmiI GGNNCC 7 cut(s) 11, 89, 152, 731, 796, 1153, 1307
BmrFI CCNGG 2 cut(s) 1025, 1070
BmrI ACTGGG 1 cut(s) 124
BmsI GCATC 5 cut(s) 334, 343, 454, 911, 1129
BmuI ACTGGG 1 cut(s) 124
BpmI CTGGAG 3 cut(s) 479, 675, 1007
Bpu14I TTCGAA 1 cut(s) 162
BpuEI CTTGAG 2 cut(s) 419, 1106
BsaI GGTCTC 1 cut(s) 793
BsaJI CCNNGG 1 cut(s) 1024
BsaXI ACNNNNNCTCC 2 cut(s) 104, 134
Bsc4I CCNNNNNNNGG 1 cut(s) 1148
Bse118I RCCGGY 1 cut(s) 490
Bse1I ACTGG 5 cut(s) 51, 119, 692, 710, 1340
Bse21I CCTNAGG 1 cut(s) 264
Bse3DI GCAATG 2 cut(s) 26, 924
BseBI CCWGG 2 cut(s) 1025, 1070
BseDI CCNNGG 1 cut(s) 1024
BseGI GGATG 5 cut(s) 330, 469, 610, 926, 1114
BseLI CCNNNNNNNGG 1 cut(s) 1148
BseMI GCAATG 2 cut(s) 26, 924
BseMII CTCAG 2 cut(s) 1085, 1307
BseNI ACTGG 5 cut(s) 51, 119, 692, 710, 1340
BseRI GAGGAG 1 cut(s) 416
BseXI GCAGC 3 cut(s) 198, 238, 682
BseYI CCCAGC 1 cut(s) 1141
BshFI GGCC 1 cut(s) 153
BshNI GGYRCC 3 cut(s) 87, 794, 1305
BsiHKAI GWGCWC 3 cut(s) 909, 1258, 1275
BsiSI CCGG 1 cut(s) 491
BslFI GGGAC 1 cut(s) 131
BslI CCNNNNNNNGG 1 cut(s) 1148
BsmAI GTCTC 3 cut(s) 110, 587, 793
BsmBI CGTCTC 1 cut(s) 110
BsmFI GGGAC 1 cut(s) 131
BsmI GAATGC 1 cut(s) 1107
BsnI GGCC 1 cut(s) 153
Bso31I GGTCTC 1 cut(s) 793
Bsp119I TTCGAA 1 cut(s) 162
Bsp1286I GDGCHC 3 cut(s) 909, 1258, 1275
Bsp143I GATC 5 cut(s) 19, 394, 549, 1046, 1225
BspACI CCGC 3 cut(s) 513, 539, 733
BspANI GGCC 1 cut(s) 153
BspCNI CTCAG 2 cut(s) 1086, 1306
BspHI TCATGA 1 cut(s) 544
BspLI GGNNCC 7 cut(s) 11, 89, 152, 731, 796, 1153, 1307
BspPI GGATC 1 cut(s) 402
BspT104I TTCGAA 1 cut(s) 162
BspT107I GGYRCC 3 cut(s) 87, 794, 1305
BspTNI GGTCTC 1 cut(s) 793
BsrDI GCAATG 2 cut(s) 26, 924
BsrFI RCCGGY 1 cut(s) 490
BsrI ACTGG 5 cut(s) 51, 119, 692, 710, 1340
BssAI RCCGGY 1 cut(s) 490
BssECI CCNNGG 1 cut(s) 1024
BssMI GATC 5 cut(s) 19, 394, 549, 1046, 1225
Bst2UI CCWGG 2 cut(s) 1025, 1070
Bst4CI ACNGT 7 cut(s) 385, 589, 700, 778, 849, 1253, 1283
Bst6I CTCTTC 2 cut(s) 161, 551
BstBI TTCGAA 1 cut(s) 162
BstC8I GCNNGC 3 cut(s) 492, 799, 931
BstDEI CTNAG 6 cut(s) 264, 531, 819, 1043, 1094, 1293
BstF5I GGATG 5 cut(s) 330, 469, 610, 926, 1114
BstKTI GATC 5 cut(s) 22, 397, 552, 1049, 1228
BstMAI GTCTC 3 cut(s) 110, 587, 793
BstMBI GATC 5 cut(s) 19, 394, 549, 1046, 1225
BstMWI GCNNNNNNNGC 4 cut(s) 186, 930, 1111, 1151
BstNI CCWGG 2 cut(s) 1025, 1070
BstNSI RCATGY 1 cut(s) 1118
BstSCI CCNGG 2 cut(s) 1023, 1068
BstV1I GCAGC 3 cut(s) 198, 238, 682
BstX2I RGATCY 5 cut(s) 19, 394, 549, 1046, 1225
BstXI CCANNNNNNTGG 1 cut(s) 98
BstYI RGATCY 5 cut(s) 19, 394, 549, 1046, 1225
Bsu36I CCTNAGG 1 cut(s) 264
BsuRI GGCC 1 cut(s) 153
BtsCI GGATG 5 cut(s) 330, 469, 610, 926, 1114
BtsI GCAGTG 1 cut(s) 883
BtsIMutI CAGTG 6 cut(s) 112, 152, 699, 833, 883, 1275
Cac8I GCNNGC 3 cut(s) 492, 799, 931
CaiI CAGNNNCTG 1 cut(s) 698
CciI TCATGA 1 cut(s) 544
Cfr10I RCCGGY 1 cut(s) 490
Cfr13I GGNCC 1 cut(s) 151
Csp6I GTAC 5 cut(s) 88, 300, 757, 833, 1306
CviAII CATG 5 cut(s) 545, 726, 910, 1115, 1322
CviQI GTAC 5 cut(s) 88, 300, 757, 833, 1306
DdeI CTNAG 6 cut(s) 264, 531, 819, 1043, 1094, 1293
DpnI GATC 5 cut(s) 21, 396, 551, 1048, 1227
DpnII GATC 5 cut(s) 19, 394, 549, 1046, 1225
Eam1104I CTCTTC 2 cut(s) 161, 551
EarI CTCTTC 2 cut(s) 161, 551
Ecl136II GAGCTC 1 cut(s) 907
Eco24I GRGCYC 1 cut(s) 909
Eco31I GGTCTC 1 cut(s) 793
Eco53kI GAGCTC 1 cut(s) 907
Eco57I CTGAAG 1 cut(s) 695
Eco81I CCTNAGG 1 cut(s) 264
EcoICRI GAGCTC 1 cut(s) 907
EcoO109I RGGNCCY 1 cut(s) 151
EcoRII CCWGG 2 cut(s) 1023, 1068
EcoT22I ATGCAT 1 cut(s) 926
EcoT38I GRGCYC 1 cut(s) 909
Esp3I CGTCTC 1 cut(s) 110
FaeI CATG 5 cut(s) 548, 729, 913, 1118, 1325
FaqI GGGAC 1 cut(s) 131
FatI CATG 5 cut(s) 544, 725, 909, 1114, 1321
FauNDI CATATG 1 cut(s) 279
FblI GTMKAC 1 cut(s) 702
Fnu4HI GCNGC 3 cut(s) 187, 252, 671
FokI GGATG 5 cut(s) 317, 476, 617, 933, 1121
FriOI GRGCYC 1 cut(s) 909
Fsp4HI GCNGC 3 cut(s) 187, 252, 671
FspBI CTAG 2 cut(s) 495, 917
GluI GCNGC 3 cut(s) 187, 252, 671
GsaI CCCAGC 1 cut(s) 1145
GsuI CTGGAG 3 cut(s) 479, 675, 1007
HaeIII GGCC 1 cut(s) 153
HapII CCGG 1 cut(s) 491
Hin1II CATG 5 cut(s) 548, 729, 913, 1118, 1325
HincII GTYRAC 1 cut(s) 703
HindII GTYRAC 1 cut(s) 703
HinfI GANTC 9 cut(s) 57, 73, 119, 206, 292, 823, 977, 1031, 1210
HpaII CCGG 1 cut(s) 491
HphI GGTGA 1 cut(s) 530
Hpy166II GTNNAC 3 cut(s) 341, 703, 1286
Hpy188I TCNGA 8 cut(s) 193, 238, 432, 626, 723, 745, 1095, 1296
Hpy8I GTNNAC 3 cut(s) 341, 703, 1286
Hpy99I CGWCG 1 cut(s) 65
HpyAV CCTTC 3 cut(s) 130, 473, 1261
HpyCH4III ACNGT 7 cut(s) 385, 589, 700, 778, 849, 1253, 1283
HpyCH4IV ACGT 1 cut(s) 1314
HpyCH4V TGCA 9 cut(s) 31, 275, 356, 467, 924, 929, 1014, 1120, 1160
HpyF10VI GCNNNNNNNGC 4 cut(s) 186, 930, 1111, 1151
HpyF3I CTNAG 6 cut(s) 264, 531, 819, 1043, 1094, 1293
HpySE526I ACGT 1 cut(s) 1314
Hsp92II CATG 5 cut(s) 548, 729, 913, 1118, 1325
KpnI GGTACC 2 cut(s) 91, 1309
KroI GCCGGC 1 cut(s) 490
KroNI GCCGGC 1 cut(s) 492
Kzo9I GATC 5 cut(s) 19, 394, 549, 1046, 1225
LmnI GCTCC 6 cut(s) 9, 177, 322, 994, 1151, 1270
Lsp1109I GCAGC 3 cut(s) 198, 238, 682
LweI GCATC 5 cut(s) 334, 343, 454, 911, 1129
MaeI CTAG 2 cut(s) 495, 917
MaeII ACGT 1 cut(s) 1314
MaeIII GTNAC 4 cut(s) 289, 694, 912, 1247
MalI GATC 5 cut(s) 21, 396, 551, 1048, 1227
MboI GATC 5 cut(s) 19, 394, 549, 1046, 1225
MboII GAAGA 3 cut(s) 148, 151, 568
MfeI CAATTG 2 cut(s) 782, 900
MflI RGATCY 5 cut(s) 19, 394, 549, 1046, 1225
MhlI GDGCHC 3 cut(s) 909, 1258, 1275
MluCI AATT 9 cut(s) 35, 166, 471, 782, 837, 900, 1161, 1203, 1299
MlyI GAGTC 2 cut(s) 113, 286
MmeI TCCRAC 2 cut(s) 300, 617
MnlI CCTC 7 cut(s) 106, 164, 394, 454, 552, 761, 866
Mph1103I ATGCAT 1 cut(s) 926
MroNI GCCGGC 1 cut(s) 490
MseI TTAA 2 cut(s) 51, 851
MslI CAYNNNNRTG 1 cut(s) 1326
MspA1I CMGCKG 2 cut(s) 673, 735
MspI CCGG 1 cut(s) 491
MspR9I CCNGG 2 cut(s) 1025, 1070
MunI CAATTG 2 cut(s) 782, 900
Mva1269I GAATGC 1 cut(s) 1107
MvaI CCWGG 2 cut(s) 1025, 1070
MwoI GCNNNNNNNGC 4 cut(s) 186, 930, 1111, 1151
NaeI GCCGGC 1 cut(s) 492
NdeI CATATG 1 cut(s) 279
NdeII GATC 5 cut(s) 19, 394, 549, 1046, 1225
NgoMIV GCCGGC 1 cut(s) 490
NlaIII CATG 5 cut(s) 548, 729, 913, 1118, 1325
NlaIV GGNNCC 7 cut(s) 11, 89, 152, 731, 796, 1153, 1307
NmuCI GTSAC 3 cut(s) 289, 694, 1247
NsiI ATGCAT 1 cut(s) 926
NspI RCATGY 1 cut(s) 1118
NspV TTCGAA 1 cut(s) 162
PagI TCATGA 1 cut(s) 544
PctI GAATGC 1 cut(s) 1107
PdiI GCCGGC 1 cut(s) 492
PfeI GAWTC 7 cut(s) 57, 73, 206, 823, 977, 1031, 1210
PflMI CCANNNNNTGG 1 cut(s) 1148
PkrI GCNGC 3 cut(s) 188, 253, 672
PleI GAGTC 2 cut(s) 113, 286
PpsI GAGTC 2 cut(s) 113, 286
Psp124BI GAGCTC 1 cut(s) 909
Psp6I CCWGG 2 cut(s) 1023, 1068
PspFI CCCAGC 1 cut(s) 1141
PspGI CCWGG 2 cut(s) 1023, 1068
PspN4I GGNNCC 7 cut(s) 11, 89, 152, 731, 796, 1153, 1307
PspPI GGNCC 1 cut(s) 151
PstNI CAGNNNCTG 1 cut(s) 698
PsuI RGATCY 5 cut(s) 19, 394, 549, 1046, 1225
PvuII CAGCTG 1 cut(s) 673
RsaI GTAC 5 cut(s) 89, 301, 758, 834, 1307
RsaNI GTAC 5 cut(s) 88, 300, 757, 833, 1306
RseI CAYNNNNRTG 1 cut(s) 1326
SacI GAGCTC 1 cut(s) 909
SalI GTCGAC 1 cut(s) 701
SaqAI TTAA 2 cut(s) 51, 851
SatI GCNGC 3 cut(s) 187, 252, 671
Sau3AI GATC 5 cut(s) 19, 394, 549, 1046, 1225
Sau96I GGNCC 1 cut(s) 151
SchI GAGTC 2 cut(s) 113, 286
ScrFI CCNGG 2 cut(s) 1025, 1070
SduI GDGCHC 3 cut(s) 909, 1258, 1275
SfaNI GCATC 5 cut(s) 334, 343, 454, 911, 1129
SfuI TTCGAA 1 cut(s) 162
SmiMI CAYNNNNRTG 1 cut(s) 1326
SmlI CTYRAG 2 cut(s) 398, 1085
SmoI CTYRAG 2 cut(s) 398, 1085
Sse9I AATT 9 cut(s) 35, 166, 471, 782, 837, 900, 1161, 1203, 1299
SsiI CCGC 3 cut(s) 513, 539, 733
SspMI CTAG 2 cut(s) 495, 917
SstI GAGCTC 1 cut(s) 909
StyD4I CCNGG 2 cut(s) 1023, 1068
TaaI ACNGT 7 cut(s) 385, 589, 700, 778, 849, 1253, 1283
TaiI ACGT 1 cut(s) 1317
TaqI TCGA 5 cut(s) 63, 162, 702, 951, 1232
TasI AATT 9 cut(s) 35, 166, 471, 782, 837, 900, 1161, 1203, 1299
TfiI GAWTC 7 cut(s) 57, 73, 206, 823, 977, 1031, 1210
Tru1I TTAA 2 cut(s) 51, 851
Tru9I TTAA 2 cut(s) 51, 851
TscAI CASTG 6 cut(s) 119, 152, 699, 833, 883, 1282
TseFI GTSAC 3 cut(s) 289, 694, 1247
TseI GCWGC 3 cut(s) 186, 251, 670
Tsp45I GTSAC 3 cut(s) 289, 694, 1247
TspDTI ATGAA 4 cut(s) 15, 56, 533, 1310
TspRI CASTG 6 cut(s) 119, 152, 699, 833, 883, 1282
Van91I CCANNNNNTGG 1 cut(s) 1148
XapI RAATTY 3 cut(s) 166, 837, 1299
XceI RCATGY 1 cut(s) 1118
XmiI GTMKAC 1 cut(s) 702
XspI CTAG 2 cut(s) 495, 917
Zsp2I ATGCAT 1 cut(s) 926
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.