Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr5

Orthogroup ID

OG0006216

Physical Location & Seq

Genomic Coordinates Forward (+)

20574628 .. 20575539

Gene Structure 912 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom05g17410.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 696 bp

ATGGGCTGGAGGCACCCACAAATCTCCATGGAAGAAGTCGTGAATCTGATCAAAGGGTTCGTAGATATACTGATTCTGCTTTCTGGGTACCAATCGTCTGGTCGAATTGCCCACTGGGACTCTCACAACGTCAAGAAAGCATTTCAATGGGGTCTCTTCTTTGAGCAGGTTTTTGGAAGTTTTAGCTCAGATGATTATACGAATTCTGTGGAGGAACTTGATGCAGCTCTATCTGAAATGACATCAGCTGCTTCTTTCCCTAAGGGTCTTGCTCATCTGTCGTCTGCTAGTCTTGCTAAGGCACGGCGCTTTGTATTAGAACATCTCATTCATACATTGCCTTTGAGGGATGTACATCTAAGAGCTTTGCTGACGGCAACTGTGGAGATGGATCTCGAGGAGCTATCGGAAACTGAGCATGACTCTCTGAATGCGTACTTCAACAAGTTGAAATTGCAGAACACATCGCTTGATCAAAGAATTGCACCAGCTACAACGACTGAAAATTGTGGCAGTGATGGTTTCACAAGGTATGTGGTCCAAGAGATCTTGAGGAGGTGGTATACTGTGTCTTTCATAACATCGGTTGAAGCAGGCTTAGATGTTCTTTCTCAAAGTGTCAGACATAGCAGTTGGAGCGAGTTTGATGATAACTTGCTTAAGGGACAACTAAAGCATGAAAATGCTCCAGAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

FANCF Myb_CC_LHEQLE Myb_DNA-binding

Protein Analysis

232

Amino Acids

26.09

Weight (kDa)

5.34

Isoelectric Point (pI)

45.91

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006216)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G44010 AT5G44010 AT5G44010 AT5G44010
fragaria_vesca	FvH4_2g20710 FvH4_2g20710 FvH4_2g20710 FvH4_2g20710 FvH4_2g20710 FvH4_2g20710 FvH4_2g20710 FvH4_2g20710
prunus_persica	Prupe.8G216500_v2.0.a1
pyrus_communis	pycom05g17410
rosa_chinensis	RchiOBHm_Chr6g0286881
rosa_laevigata	RLG00000012529
rosa_multiflora	Rmu_sc0002520.1_g000002 Rmu_sc0002520.1_g000006 Rmu_sc0008415.1_g000003
rosa_roxburghii	Rroxscaffold_7G00181830
rosa_rugosa	Rorug06G0184500 Rorug06G0184500
rosa_samantha	Rh6AG296500 Rh6BG301000 Rh6CG308500 Rh6DG292300
rosa_wichuraiana	Rw6G025580

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	157
Acc65I	GGTACC	1 cut(s)	87
AccB1I	GGYRCC	2 cut(s)	12, 87
AccI	GTMKAC	1 cut(s)	563
AclWI	GGATC	1 cut(s)	399
AcsI	RAATTY	1 cut(s)	202
AfaI	GTAC	3 cut(s)	89, 354, 437
AflII	CTTAAG	1 cut(s)	659
AgsI	TTSAA	4 cut(s)	146, 442, 451, 590
AluBI	AGCT	6 cut(s)	186, 227, 248, 365, 403, 491
AluI	AGCT	6 cut(s)	186, 227, 248, 365, 403, 491
Alw26I	GTCTC	1 cut(s)	158
AlwI	GGATC	1 cut(s)	399
Ama87I	CYCGRG	1 cut(s)	395
ApeKI	GCWGC	2 cut(s)	224, 248
ApoI	RAATTY	1 cut(s)	202
Asp718I	GGTACC	1 cut(s)	87
AspLEI	GCGC	1 cut(s)	309
AspS9I	GGNCC	1 cut(s)	538
AvaI	CYCGRG	1 cut(s)	395
AvaII	GGWCC	1 cut(s)	538
AxyI	CCTNAGG	1 cut(s)	261
BanI	GGYRCC	2 cut(s)	12, 87
BbvI	GCAGC	2 cut(s)	235, 236
BccI	CCATC	2 cut(s)	382, 512
BceAI	ACGGC	2 cut(s)	320, 390
BclI	TGATCA	2 cut(s)	48, 472
BcoDI	GTCTC	1 cut(s)	158
BfaI	CTAG	1 cut(s)	288
BfoI	RGCGCY	1 cut(s)	310
BfrI	CTTAAG	1 cut(s)	659
BfuAI	ACCTGC	1 cut(s)	157
BglII	AGATCT	1 cut(s)	546
BisI	GCNGC	2 cut(s)	225, 249
BlsI	GCNGC	2 cut(s)	226, 250
Bme18I	GGWCC	1 cut(s)	538
BmeT110I	CYCGRG	1 cut(s)	395
BmgT120I	GGNCC	1 cut(s)	538
BmiI	GGNNCC	2 cut(s)	14, 89
BmrI	ACTGGG	1 cut(s)	124
BmsI	GCATC	1 cut(s)	211
BmuI	ACTGGG	1 cut(s)	124
BplI	GAGNNNNNCTC	2 cut(s)	407, 439
BpmI	CTGGAG	2 cut(s)	28, 672
Bpu10I	CCTNAGC	1 cut(s)	297
BpuEI	CTTGAG	1 cut(s)	571
BsaBI	GATNNNNATC	1 cut(s)	354
BsaI	GGTCTC	1 cut(s)	158
BsaJI	CCNNGG	1 cut(s)	27
Bse1I	ACTGG	1 cut(s)	119
Bse21I	CCTNAGG	1 cut(s)	261
Bse3DI	GCAATG	1 cut(s)	335
Bse8I	GATNNNNATC	1 cut(s)	354
BseDI	CCNNGG	1 cut(s)	27
BseGI	GGATG	1 cut(s)	355
BseJI	GATNNNNATC	1 cut(s)	354
BseMI	GCAATG	1 cut(s)	335
BseMII	CTCAG	2 cut(s)	201, 405
BseNI	ACTGG	1 cut(s)	119
BseRI	GAGGAG	2 cut(s)	413, 568
BseXI	GCAGC	2 cut(s)	235, 236
BshNI	GGYRCC	2 cut(s)	12, 87
BsiHKCI	CYCGRG	1 cut(s)	395
BslFI	GGGAC	2 cut(s)	131, 678
BsmAI	GTCTC	1 cut(s)	158
BsmFI	GGGAC	2 cut(s)	131, 678
BsmI	GAATGC	1 cut(s)	436
Bso31I	GGTCTC	1 cut(s)	158
BsoBI	CYCGRG	1 cut(s)	395
Bsp1407I	TGTACA	1 cut(s)	352
Bsp143I	GATC	4 cut(s)	48, 391, 472, 546
Bsp19I	CCATGG	1 cut(s)	27
BspCNI	CTCAG	2 cut(s)	200, 406
BspLI	GGNNCC	2 cut(s)	14, 89
BspMI	ACCTGC	1 cut(s)	157
BspPI	GGATC	1 cut(s)	399
BspT107I	GGYRCC	2 cut(s)	12, 87
BspTI	CTTAAG	1 cut(s)	659
BspTNI	GGTCTC	1 cut(s)	158
BsrDI	GCAATG	1 cut(s)	335
BsrGI	TGTACA	1 cut(s)	352
BsrI	ACTGG	1 cut(s)	119
BssECI	CCNNGG	1 cut(s)	27
BssMI	GATC	4 cut(s)	48, 391, 472, 546
BssNAI	GTATAC	1 cut(s)	564
BssT1I	CCWWGG	1 cut(s)	27
Bst1107I	GTATAC	1 cut(s)	564
Bst4CI	ACNGT	2 cut(s)	382, 568
Bst6I	CTCTTC	1 cut(s)	161
BstAFI	CTTAAG	1 cut(s)	659
BstAUI	TGTACA	1 cut(s)	352
BstC8I	GCNNGC	1 cut(s)	595
BstDEI	CTNAG	6 cut(s)	187, 261, 297, 359, 414, 598
BstDSI	CCRYGG	1 cut(s)	27
BstF5I	GGATG	1 cut(s)	355
BstH2I	RGCGCY	1 cut(s)	310
BstHHI	GCGC	1 cut(s)	309
BstKTI	GATC	4 cut(s)	51, 394, 475, 549
BstMAI	GTCTC	1 cut(s)	158
BstMBI	GATC	4 cut(s)	48, 391, 472, 546
BstMWI	GCNNNNNNNGC	2 cut(s)	293, 636
BstV1I	GCAGC	2 cut(s)	235, 236
BstX2I	RGATCY	2 cut(s)	391, 546
BstXI	CCANNNNNNTGG	1 cut(s)	98
BstYI	RGATCY	2 cut(s)	391, 546
BstZ17I	GTATAC	1 cut(s)	564
Bsu36I	CCTNAGG	1 cut(s)	261
BtgI	CCRYGG	1 cut(s)	27
BtgZI	GCGATG	1 cut(s)	450
BtsCI	GGATG	1 cut(s)	355
BtsI	GCAGTG	1 cut(s)	520
BtsIMutI	CAGTG	2 cut(s)	112, 520
BveI	ACCTGC	1 cut(s)	157
Cac8I	GCNNGC	1 cut(s)	595
CfoI	GCGC	1 cut(s)	309
Cfr13I	GGNCC	1 cut(s)	538
Csp6I	GTAC	3 cut(s)	88, 353, 436
CspCI	CAANNNNNGTGG	2 cut(s)	516, 551
CviAII	CATG	3 cut(s)	28, 419, 677
CviJI	RGCY	8 cut(s)	6, 186, 227, 248, 365, 403, 491, 597
CviKI_1	RGCY	8 cut(s)	6, 186, 227, 248, 365, 403, 491, 597
CviQI	GTAC	3 cut(s)	88, 353, 436
DdeI	CTNAG	6 cut(s)	187, 261, 297, 359, 414, 598
DpnI	GATC	4 cut(s)	50, 393, 474, 548
DpnII	GATC	4 cut(s)	48, 391, 472, 546
Eam1104I	CTCTTC	1 cut(s)	161
EarI	CTCTTC	1 cut(s)	161
Eco130I	CCWWGG	1 cut(s)	27
Eco31I	GGTCTC	1 cut(s)	158
Eco47I	GGWCC	1 cut(s)	538
Eco81I	CCTNAGG	1 cut(s)	261
Eco88I	CYCGRG	1 cut(s)	395
EcoRI	GAATTC	1 cut(s)	202
EcoT14I	CCWWGG	1 cut(s)	27
ErhI	CCWWGG	1 cut(s)	27
FaeI	CATG	3 cut(s)	31, 422, 680
FaqI	GGGAC	2 cut(s)	131, 678
FatI	CATG	3 cut(s)	27, 418, 676
FbaI	TGATCA	2 cut(s)	48, 472
FblI	GTMKAC	1 cut(s)	563
Fnu4HI	GCNGC	2 cut(s)	225, 249
FokI	GGATG	1 cut(s)	362
Fsp4HI	GCNGC	2 cut(s)	225, 249
FspBI	CTAG	1 cut(s)	288
GlaI	GCGC	1 cut(s)	308
GluI	GCNGC	2 cut(s)	225, 249
GsuI	CTGGAG	2 cut(s)	28, 672
HaeII	RGCGCY	1 cut(s)	310
HhaI	GCGC	1 cut(s)	309
Hin1II	CATG	3 cut(s)	31, 422, 680
Hin6I	GCGC	1 cut(s)	307
HinP1I	GCGC	1 cut(s)	307
HinfI	GANTC	4 cut(s)	43, 73, 119, 422
Hpy166II	GTNNAC	1 cut(s)	564
Hpy188I	TCNGA	6 cut(s)	48, 190, 235, 409, 429, 623
Hpy188III	TCNNGA	5 cut(s)	40, 133, 395, 550, 689
Hpy8I	GTNNAC	1 cut(s)	564
HpyCH4III	ACNGT	2 cut(s)	382, 568
HpyCH4IV	ACGT	1 cut(s)	129
HpyCH4V	TGCA	3 cut(s)	224, 457, 485
HpyF10VI	GCNNNNNNNGC	2 cut(s)	293, 636
HpyF3I	CTNAG	6 cut(s)	187, 261, 297, 359, 414, 598
HpySE526I	ACGT	1 cut(s)	129
Hsp92II	CATG	3 cut(s)	31, 422, 680
HspAI	GCGC	1 cut(s)	307
KpnI	GGTACC	1 cut(s)	91
Ksp22I	TGATCA	2 cut(s)	48, 472
Kzo9I	GATC	4 cut(s)	48, 391, 472, 546
LmnI	GCTCC	3 cut(s)	400, 636, 691
LpnPI	CCDG	6 cut(s)	69, 84, 100, 152, 501, 579
Lsp1109I	GCAGC	2 cut(s)	235, 236
LweI	GCATC	1 cut(s)	211
MaeI	CTAG	1 cut(s)	288
MaeII	ACGT	1 cut(s)	129
MalI	GATC	4 cut(s)	50, 393, 474, 548
MboI	GATC	4 cut(s)	48, 391, 472, 546
MboII	GAAGA	2 cut(s)	44, 148
MflI	RGATCY	2 cut(s)	391, 546
MluCI	AATT	5 cut(s)	105, 202, 452, 480, 505
MlyI	GAGTC	2 cut(s)	113, 416
MmeI	TCCRAC	1 cut(s)	614
MnlI	CCTC	6 cut(s)	3, 205, 339, 391, 546, 549
MseI	TTAA	1 cut(s)	660
MslI	CAYNNNNRTG	2 cut(s)	145, 681
MspA1I	CMGCKG	1 cut(s)	248
MspCI	CTTAAG	1 cut(s)	659
Mva1269I	GAATGC	1 cut(s)	436
MwoI	GCNNNNNNNGC	2 cut(s)	293, 636
NcoI	CCATGG	1 cut(s)	27
NdeII	GATC	4 cut(s)	48, 391, 472, 546
NlaIII	CATG	3 cut(s)	31, 422, 680
NlaIV	GGNNCC	2 cut(s)	14, 89
PaeR7I	CTCGAG	1 cut(s)	395
PctI	GAATGC	1 cut(s)	436
PfeI	GAWTC	2 cut(s)	43, 73
PkrI	GCNGC	2 cut(s)	226, 250
PleI	GAGTC	2 cut(s)	113, 416
PpsI	GAGTC	2 cut(s)	113, 416
PspN4I	GGNNCC	2 cut(s)	14, 89
PspPI	GGNCC	1 cut(s)	538
PsuI	RGATCY	2 cut(s)	391, 546
PvuII	CAGCTG	1 cut(s)	248
RsaI	GTAC	3 cut(s)	89, 354, 437
RsaNI	GTAC	3 cut(s)	88, 353, 436
RseI	CAYNNNNRTG	2 cut(s)	145, 681
SaqAI	TTAA	1 cut(s)	660
SatI	GCNGC	2 cut(s)	225, 249
Sau3AI	GATC	4 cut(s)	48, 391, 472, 546
Sau96I	GGNCC	1 cut(s)	538
SchI	GAGTC	2 cut(s)	113, 416
SfaNI	GCATC	1 cut(s)	211
Sfr274I	CTCGAG	1 cut(s)	395
SinI	GGWCC	1 cut(s)	538
SlaI	CTCGAG	1 cut(s)	395
SmiMI	CAYNNNNRTG	2 cut(s)	145, 681
SmlI	CTYRAG	3 cut(s)	395, 550, 659
SmoI	CTYRAG	3 cut(s)	395, 550, 659
Sse9I	AATT	5 cut(s)	105, 202, 452, 480, 505
SspMI	CTAG	1 cut(s)	288
StyI	CCWWGG	1 cut(s)	27
TaaI	ACNGT	2 cut(s)	382, 568
TaiI	ACGT	1 cut(s)	132
TaqI	TCGA	2 cut(s)	103, 396
TasI	AATT	5 cut(s)	105, 202, 452, 480, 505
TatI	WGTACW	1 cut(s)	352
TfiI	GAWTC	2 cut(s)	43, 73
Tru1I	TTAA	1 cut(s)	660
Tru9I	TTAA	1 cut(s)	660
TscAI	CASTG	2 cut(s)	119, 520
TseI	GCWGC	2 cut(s)	224, 248
TspDTI	ATGAA	3 cut(s)	320, 565, 693
TspRI	CASTG	2 cut(s)	119, 520
Vha464I	CTTAAG	1 cut(s)	659
VpaK11BI	GGWCC	1 cut(s)	538
XapI	RAATTY	1 cut(s)	202
XhoI	CTCGAG	1 cut(s)	395
XmiI	GTMKAC	1 cut(s)	563
XspI	CTAG	1 cut(s)	288

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.