Rmu_sc0002520.1_g000002
MYB Family

Fanconi anemia group F protein (FANCF)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0002520.1
OG0006216
Physical Location & Seq
Forward (+)
10948 .. 11405
458 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0002520.1_g000002.1.cds

Sequence Viewer

Length: 339 bp
atgagttggagccacccagatatttcattggaagaattcatgaaactggttaaagggttcgtcgatatactgattctgctttctgggttccaatcctctggtcaccttgctcactgggactcccagaacatcaagaaggccttcctatggggcttcttcttcgaaaatagctttagcagctctgatgattatgtggactctgtgatggaacttgatggggctatttctgaaatgacatctgctgcttctttccccaaggttagtttacctttgacatctgctgcattcgttcaatcctgctactgtactcgctgcatctcatccatagtttacctttga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
FANCF Myb_CC_LHEQLE Myb_DNA-binding

Protein Analysis

112

Amino Acids

12.49

Weight (kDa)

4.7

Isoelectric Point (pI)

45.79

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 1 cut(s) 35
AfaI GTAC 1 cut(s) 307
AfiI CCNNNNNNNGG 1 cut(s) 147
AgsI TTSAA 1 cut(s) 293
AluBI AGCT 2 cut(s) 171, 180
AluI AGCT 2 cut(s) 171, 180
AoxI GGCC 1 cut(s) 138
ApeKI GCWGC 4 cut(s) 177, 242, 281, 312
ApoI RAATTY 1 cut(s) 35
Asp700I GAANNNNTTC 1 cut(s) 140
AsuHPI GGTGA 1 cut(s) 95
AsuII TTCGAA 1 cut(s) 162
BbvI GCAGC 4 cut(s) 189, 229, 268, 299
BccI CCATC 2 cut(s) 199, 209
BisI GCNGC 4 cut(s) 178, 243, 282, 313
BlsI GCNGC 4 cut(s) 179, 244, 283, 314
BmiI GGNNCC 2 cut(s) 11, 89
BmrI ACTGGG 1 cut(s) 124
BmsI GCATC 1 cut(s) 324
BmuI ACTGGG 1 cut(s) 124
Bpu14I TTCGAA 1 cut(s) 162
BsaJI CCNNGG 1 cut(s) 255
BsaXI ACNNNNNCTCC 2 cut(s) 104, 134
Bsc4I CCNNNNNNNGG 1 cut(s) 147
Bse1I ACTGG 2 cut(s) 51, 119
BseDI CCNNGG 1 cut(s) 255
BseGI GGATG 1 cut(s) 320
BseLI CCNNNNNNNGG 1 cut(s) 147
BseNI ACTGG 2 cut(s) 51, 119
BseXI GCAGC 4 cut(s) 189, 229, 268, 299
BshFI GGCC 1 cut(s) 140
BslFI GGGAC 1 cut(s) 131
BslI CCNNNNNNNGG 1 cut(s) 147
BsmFI GGGAC 1 cut(s) 131
BsmI GAATGC 1 cut(s) 284
BsnI GGCC 1 cut(s) 140
Bsp119I TTCGAA 1 cut(s) 162
BspANI GGCC 1 cut(s) 140
BspHI TCATGA 1 cut(s) 39
BspLI GGNNCC 2 cut(s) 11, 89
BspT104I TTCGAA 1 cut(s) 162
BsrI ACTGG 2 cut(s) 51, 119
BssECI CCNNGG 1 cut(s) 255
BssT1I CCWWGG 1 cut(s) 255
Bst4CI ACNGT 1 cut(s) 305
BstBI TTCGAA 1 cut(s) 162
BstEII GGTNACC 1 cut(s) 101
BstF5I GGATG 1 cut(s) 320
BstMWI GCNNNNNNNGC 1 cut(s) 177
BstPI GGTNACC 1 cut(s) 101
BstV1I GCAGC 4 cut(s) 189, 229, 268, 299
BstXI CCANNNNNNTGG 1 cut(s) 98
BsuRI GGCC 1 cut(s) 140
BtsCI GGATG 1 cut(s) 320
BtsIMutI CAGTG 1 cut(s) 112
CciI TCATGA 1 cut(s) 39
Csp6I GTAC 1 cut(s) 306
CviAII CATG 1 cut(s) 40
CviJI RGCY 6 cut(s) 12, 140, 153, 171, 180, 221
CviKI_1 RGCY 6 cut(s) 12, 140, 153, 171, 180, 221
CviQI GTAC 1 cut(s) 306
Eco130I CCWWGG 1 cut(s) 255
Eco147I AGGCCT 1 cut(s) 140
Eco91I GGTNACC 1 cut(s) 101
EcoO65I GGTNACC 1 cut(s) 101
EcoRI GAATTC 1 cut(s) 35
EcoT14I CCWWGG 1 cut(s) 255
ErhI CCWWGG 1 cut(s) 255
FaeI CATG 1 cut(s) 43
FaiI YATR 5 cut(s) 41, 68, 148, 192, 326
FalI AAGNNNNNCTT 2 cut(s) 125, 157
FaqI GGGAC 1 cut(s) 131
FatI CATG 1 cut(s) 39
Fnu4HI GCNGC 4 cut(s) 178, 243, 282, 313
FokI GGATG 1 cut(s) 307
Fsp4HI GCNGC 4 cut(s) 178, 243, 282, 313
GluI GCNGC 4 cut(s) 178, 243, 282, 313
HaeIII GGCC 1 cut(s) 140
Hin1II CATG 1 cut(s) 43
HinfI GANTC 3 cut(s) 73, 119, 197
HphI GGTGA 1 cut(s) 95
Hpy166II GTNNAC 3 cut(s) 196, 266, 331
Hpy188I TCNGA 2 cut(s) 184, 229
Hpy188III TCNNGA 2 cut(s) 40, 133
Hpy8I GTNNAC 3 cut(s) 196, 266, 331
Hpy99I CGWCG 1 cut(s) 65
HpyAV CCTTC 2 cut(s) 130, 151
HpyCH4III ACNGT 1 cut(s) 305
HpyCH4V TGCA 2 cut(s) 284, 315
HpyF10VI GCNNNNNNNGC 1 cut(s) 177
Hsp92II CATG 1 cut(s) 43
LmnI GCTCC 1 cut(s) 9
LpnPI CCDG 7 cut(s) 30, 32, 69, 84, 100, 137, 310
Lsp1109I GCAGC 4 cut(s) 189, 229, 268, 299
LweI GCATC 1 cut(s) 324
MaeIII GTNAC 1 cut(s) 101
MboII GAAGA 3 cut(s) 44, 148, 151
MluCI AATT 1 cut(s) 35
MlyI GAGTC 2 cut(s) 113, 191
MnlI CCTC 1 cut(s) 106
MroXI GAANNNNTTC 1 cut(s) 140
MseI TTAA 1 cut(s) 51
Mva1269I GAATGC 1 cut(s) 284
MwoI GCNNNNNNNGC 1 cut(s) 177
NlaIII CATG 1 cut(s) 43
NlaIV GGNNCC 2 cut(s) 11, 89
NmuCI GTSAC 1 cut(s) 101
NspV TTCGAA 1 cut(s) 162
PagI TCATGA 1 cut(s) 39
PceI AGGCCT 1 cut(s) 140
PctI GAATGC 1 cut(s) 284
PdmI GAANNNNTTC 1 cut(s) 140
PfeI GAWTC 1 cut(s) 73
PkrI GCNGC 4 cut(s) 179, 244, 283, 314
PleI GAGTC 2 cut(s) 113, 191
PpsI GAGTC 2 cut(s) 113, 191
PspEI GGTNACC 1 cut(s) 101
PspN4I GGNNCC 2 cut(s) 11, 89
RsaI GTAC 1 cut(s) 307
RsaNI GTAC 1 cut(s) 306
SaqAI TTAA 1 cut(s) 51
SatI GCNGC 4 cut(s) 178, 243, 282, 313
SchI GAGTC 2 cut(s) 113, 191
SetI ASST 6 cut(s) 108, 173, 182, 261, 271, 336
SfaNI GCATC 1 cut(s) 324
SfuI TTCGAA 1 cut(s) 162
Sse9I AATT 1 cut(s) 35
SseBI AGGCCT 1 cut(s) 140
StuI AGGCCT 1 cut(s) 140
StyI CCWWGG 1 cut(s) 255
TaaI ACNGT 1 cut(s) 305
TaqI TCGA 2 cut(s) 63, 162
TasI AATT 1 cut(s) 35
TatI WGTACW 1 cut(s) 305
TfiI GAWTC 1 cut(s) 73
Tru1I TTAA 1 cut(s) 51
Tru9I TTAA 1 cut(s) 51
TscAI CASTG 1 cut(s) 119
TseFI GTSAC 1 cut(s) 101
TseI GCWGC 4 cut(s) 177, 242, 281, 312
Tsp45I GTSAC 1 cut(s) 101
TspDTI ATGAA 3 cut(s) 15, 28, 56
TspRI CASTG 1 cut(s) 119
XapI RAATTY 1 cut(s) 35
XmnI GAANNNNTTC 1 cut(s) 140
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.