Rh7CG101400
MYB Family

Myb/SANT-like DNA-binding domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7C
OG0016332
Physical Location & Seq
Forward (+)
7611953 .. 7612732
780 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7CG101400.1

Sequence Viewer

Length: 780 bp
ATGGCATCGGATTCAAGCAAACACGAAGACGGTGGTTCTCCGTCCGACCAAGTTGAGAAATTGCAAGTGCCAAGTGGGAGCAGCCAAGAGAGAACGAAAACAATTAGGCACCCTCGATGGACCAGAAAAGAGACCTTAACCCTTATAGAGGGCAAGAAGGTTATAGAAAATGGGATTCAATTTCAAAAGGGTCGAAGATCAATTGCAGCCTCGGGGCCAGACCCTGTTGAACCCAAGTGGGATTTGGTATCATCGTTTTGCAAACAGCGTGGCGTGAGCAGAGGACCGGTACAGTGCAGGAAGAGATGGAGCAATCTTCTTGTTGATTTCAAGAAAATCAGGAACTGGGAGTCACAGATTAAGGGACAGGCGGAGTCTTTTTGGGTGATGAGGAATGATTTGAGGAGAGACAAGAAACTTCCAGGTTTCTTCGATAGGGATGTTTACAATGTCTTGGACGGAAAAGATGCGACTGCAAAACCAGCATCTCCACTGGCAGTCCTATGCCCAATGCCGCTAAATTCAATACCTATGGAAGATGTGTGTCATGTGACTGAGGAGGCAGCTGCAGAAGAAGAGGAAGAAGAAGAAGAAGTGGAGGAGGAGGAACCTGAGAAATTTTTCAATAGCATACGAAATGATTCAACAGAAAATGATCTGTTTTCAGATTTTGAGGAATCTGGGCAAGAGGAGACAACCATAAACTCCAAAAAGGAACAAAAGGTGACAGGGAGTCCAACAAAAATATTCACAACTCCTGTGCCTACTCCAGGTGACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-bind_4

Protein Analysis

259

Amino Acids

29.3

Weight (kDa)

5.09

Isoelectric Point (pI)

65.81

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-bind_4 PF13837 38 - 130 2.6e-09 Myb/SANT-like DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016332)

Species Orthologous Gene IDs
fragaria_vesca FvH4_5g09440
malus_domestica MD06G1131400.v1.1 MD14G1147800.v1.1
prunus_persica Prupe.5G142400_v2.0.a1
pyrus_communis pycom06g12280
rosa_chinensis RchiOBHm_Chr7g0188751
rosa_laevigata RLG00000004664
rosa_multiflora Rmu_sc0042908.1_g000001
rosa_roxburghii Rroxscaffold_3G00266070
rosa_rugosa Rorug06G0493700
rosa_samantha Rh7AG098200 Rh7BG099700 Rh7CG101400 Rh7DG100000
rosa_wichuraiana Rw7G008460

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 108
AciI CCGC 2 cut(s) 371, 515
AcsI RAATTY 2 cut(s) 520, 617
AfaI GTAC 1 cut(s) 291
AfiI CCNNNNNNNGG 2 cut(s) 148, 770
AgeI ACCGGT 1 cut(s) 286
AgsI TTSAA 8 cut(s) 15, 179, 185, 230, 331, 525, 625, 645
AhdI GACNNNNNGTC 1 cut(s) 732
AjnI CCWGG 2 cut(s) 421, 769
AluBI AGCT 1 cut(s) 566
AluI AGCT 1 cut(s) 566
Alw26I GTCTC 3 cut(s) 125, 402, 686
AlwNI CAGNNNCTG 2 cut(s) 224, 345
Ama87I CYCGRG 1 cut(s) 211
AoxI GGCC 1 cut(s) 215
ApeKI GCWGC 4 cut(s) 81, 206, 563, 566
ApoI RAATTY 2 cut(s) 520, 617
AsiGI ACCGGT 1 cut(s) 286
Asp700I GAANNNNTTC 2 cut(s) 620, 640
AspS9I GGNCC 3 cut(s) 120, 215, 284
AsuHPI GGTGA 2 cut(s) 397, 736
AvaI CYCGRG 1 cut(s) 211
AvaII GGWCC 2 cut(s) 120, 284
BanI GGYRCC 1 cut(s) 108
BbsI GAAGAC 1 cut(s) 33
BbvI GCAGC 4 cut(s) 93, 218, 553, 575
BccI CCATC 2 cut(s) 111, 300
BciT130I CCWGG 2 cut(s) 423, 771
BcoDI GTCTC 3 cut(s) 125, 402, 686
BfmI CTRYAG 1 cut(s) 567
BisI GCNGC 5 cut(s) 82, 207, 515, 564, 567
BlsI GCNGC 5 cut(s) 83, 208, 516, 565, 568
Bme1390I CCNGG 2 cut(s) 423, 771
Bme18I GGWCC 2 cut(s) 120, 284
BmeRI GACNNNNNGTC 1 cut(s) 732
BmeT110I CYCGRG 1 cut(s) 211
BmgT120I GGNCC 3 cut(s) 120, 215, 284
BmiI GGNNCC 3 cut(s) 110, 216, 609
BmrFI CCNGG 2 cut(s) 423, 771
BmrI ACTGGG 1 cut(s) 355
BmsI GCATC 3 cut(s) 14, 457, 494
BmuI ACTGGG 1 cut(s) 355
BpiI GAAGAC 1 cut(s) 33
BpmI CTGGAG 1 cut(s) 753
BsaI GGTCTC 1 cut(s) 125
BsaJI CCNNGG 1 cut(s) 210
BsaWI WCCGGW 1 cut(s) 286
Bsc4I CCNNNNNNNGG 2 cut(s) 148, 770
Bse118I RCCGGY 1 cut(s) 286
Bse1I ACTGG 2 cut(s) 350, 498
BseBI CCWGG 2 cut(s) 423, 771
BseDI CCNNGG 1 cut(s) 210
BseGI GGATG 1 cut(s) 445
BseLI CCNNNNNNNGG 2 cut(s) 148, 770
BseMII CTCAG 2 cut(s) 546, 603
BseNI ACTGG 2 cut(s) 350, 498
BseRI GAGGAG 5 cut(s) 418, 572, 614, 617, 704
BseXI GCAGC 4 cut(s) 93, 218, 553, 575
BsgI GTGCAG 1 cut(s) 316
BshFI GGCC 1 cut(s) 217
BshNI GGYRCC 1 cut(s) 108
BshTI ACCGGT 1 cut(s) 286
BsiHKCI CYCGRG 1 cut(s) 211
BsiSI CCGG 1 cut(s) 287
BslFI GGGAC 1 cut(s) 378
BslI CCNNNNNNNGG 2 cut(s) 148, 770
BsmAI GTCTC 3 cut(s) 125, 402, 686
BsmFI GGGAC 1 cut(s) 378
BsnI GGCC 1 cut(s) 217
Bso31I GGTCTC 1 cut(s) 125
BsoBI CYCGRG 1 cut(s) 211
Bsp143I GATC 2 cut(s) 197, 655
BspACI CCGC 2 cut(s) 371, 515
BspANI GGCC 1 cut(s) 217
BspCNI CTCAG 2 cut(s) 547, 604
BspLI GGNNCC 3 cut(s) 110, 216, 609
BspMAI CTGCAG 1 cut(s) 571
BspT107I GGYRCC 1 cut(s) 108
BspTNI GGTCTC 1 cut(s) 125
BsrFI RCCGGY 1 cut(s) 286
BsrI ACTGG 2 cut(s) 350, 498
BssAI RCCGGY 1 cut(s) 286
BssECI CCNNGG 1 cut(s) 210
BssMI GATC 2 cut(s) 197, 655
Bst2UI CCWGG 2 cut(s) 423, 771
Bst4CI ACNGT 2 cut(s) 32, 294
Bst6I CTCTTC 2 cut(s) 296, 570
BstDEI CTNAG 2 cut(s) 555, 612
BstENI CCTNNNNNAGG 2 cut(s) 146, 768
BstF5I GGATG 1 cut(s) 445
BstKTI GATC 2 cut(s) 200, 658
BstMAI GTCTC 3 cut(s) 125, 402, 686
BstMBI GATC 2 cut(s) 197, 655
BstMWI GCNNNNNNNGC 1 cut(s) 482
BstNI CCWGG 2 cut(s) 423, 771
BstSCI CCNGG 2 cut(s) 421, 769
BstSFI CTRYAG 1 cut(s) 567
BstV1I GCAGC 4 cut(s) 93, 218, 553, 575
BstV2I GAAGAC 1 cut(s) 33
BsuRI GGCC 1 cut(s) 217
BtsCI GGATG 1 cut(s) 445
BtsIMutI CAGTG 2 cut(s) 299, 491
CaiI CAGNNNCTG 2 cut(s) 224, 345
Cfr10I RCCGGY 1 cut(s) 286
Cfr13I GGNCC 3 cut(s) 120, 215, 284
Csp6I GTAC 1 cut(s) 290
CspAI ACCGGT 1 cut(s) 286
CspCI CAANNNNNGTGG 2 cut(s) 250, 285
CviAII CATG 1 cut(s) 548
CviJI RGCY 4 cut(s) 84, 209, 217, 566
CviKI_1 RGCY 4 cut(s) 84, 209, 217, 566
CviQI GTAC 1 cut(s) 290
DdeI CTNAG 2 cut(s) 555, 612
DpnI GATC 2 cut(s) 199, 657
DpnII GATC 2 cut(s) 197, 655
DriI GACNNNNNGTC 1 cut(s) 732
Eam1104I CTCTTC 2 cut(s) 296, 570
Eam1105I GACNNNNNGTC 1 cut(s) 732
EarI CTCTTC 2 cut(s) 296, 570
EciI GGCGGA 1 cut(s) 386
Eco31I GGTCTC 1 cut(s) 125
Eco47I GGWCC 2 cut(s) 120, 284
Eco88I CYCGRG 1 cut(s) 211
EcoNI CCTNNNNNAGG 2 cut(s) 146, 768
EcoRII CCWGG 2 cut(s) 421, 769
FaeI CATG 1 cut(s) 551
FaiI YATR 7 cut(s) 146, 164, 505, 533, 549, 632, 701
FaqI GGGAC 1 cut(s) 378
FatI CATG 1 cut(s) 547
Fnu4HI GCNGC 5 cut(s) 82, 207, 515, 564, 567
FokI GGATG 1 cut(s) 452
Fsp4HI GCNGC 5 cut(s) 82, 207, 515, 564, 567
GluI GCNGC 5 cut(s) 82, 207, 515, 564, 567
GsuI CTGGAG 1 cut(s) 753
HaeIII GGCC 1 cut(s) 217
HapII CCGG 1 cut(s) 287
Hin1II CATG 1 cut(s) 551
HinfI GANTC 7 cut(s) 11, 175, 350, 374, 641, 677, 733
HpaII CCGG 1 cut(s) 287
HphI GGTGA 2 cut(s) 397, 736
Hpy166II GTNNAC 1 cut(s) 445
Hpy188I TCNGA 3 cut(s) 10, 46, 667
Hpy188III TCNNGA 2 cut(s) 331, 340
Hpy8I GTNNAC 1 cut(s) 445
HpyAV CCTTC 1 cut(s) 151
HpyCH4III ACNGT 2 cut(s) 32, 294
HpyCH4V TGCA 6 cut(s) 64, 206, 261, 297, 476, 569
HpyF10VI GCNNNNNNNGC 1 cut(s) 482
HpyF3I CTNAG 2 cut(s) 555, 612
Hsp92II CATG 1 cut(s) 551
Kzo9I GATC 2 cut(s) 197, 655
LmnI GCTCC 2 cut(s) 78, 309
Lsp1109I GCAGC 4 cut(s) 93, 218, 553, 575
LweI GCATC 3 cut(s) 14, 457, 494
MaeIII GTNAC 4 cut(s) 351, 550, 724, 773
MalI GATC 2 cut(s) 199, 657
MboI GATC 2 cut(s) 197, 655
MfeI CAATTG 1 cut(s) 201
MluCI AATT 6 cut(s) 59, 102, 179, 201, 520, 617
MlyI GAGTC 3 cut(s) 359, 383, 742
MmeI TCCRAC 2 cut(s) 69, 761
MroXI GAANNNNTTC 2 cut(s) 620, 640
MseI TTAA 2 cut(s) 137, 360
MspA1I CMGCKG 1 cut(s) 566
MspI CCGG 1 cut(s) 287
MspR9I CCNGG 2 cut(s) 423, 771
MunI CAATTG 1 cut(s) 201
MvaI CCWGG 2 cut(s) 423, 771
MwoI GCNNNNNNNGC 1 cut(s) 482
NdeII GATC 2 cut(s) 197, 655
NlaIII CATG 1 cut(s) 551
NlaIV GGNNCC 3 cut(s) 110, 216, 609
NmuCI GTSAC 4 cut(s) 351, 550, 724, 773
PdmI GAANNNNTTC 2 cut(s) 620, 640
PfeI GAWTC 4 cut(s) 11, 175, 641, 677
PinAI ACCGGT 1 cut(s) 286
PkrI GCNGC 5 cut(s) 83, 208, 516, 565, 568
PleI GAGTC 3 cut(s) 358, 382, 741
PpsI GAGTC 3 cut(s) 358, 382, 741
Psp6I CCWGG 2 cut(s) 421, 769
PspGI CCWGG 2 cut(s) 421, 769
PspN4I GGNNCC 3 cut(s) 110, 216, 609
PspPI GGNCC 3 cut(s) 120, 215, 284
PstI CTGCAG 1 cut(s) 571
PstNI CAGNNNCTG 2 cut(s) 224, 345
PvuII CAGCTG 1 cut(s) 566
RsaI GTAC 1 cut(s) 291
RsaNI GTAC 1 cut(s) 290
SaqAI TTAA 2 cut(s) 137, 360
SatI GCNGC 5 cut(s) 82, 207, 515, 564, 567
Sau3AI GATC 2 cut(s) 197, 655
Sau96I GGNCC 3 cut(s) 120, 215, 284
SchI GAGTC 3 cut(s) 359, 383, 742
ScrFI CCNGG 2 cut(s) 423, 771
SetI ASST 8 cut(s) 137, 162, 427, 532, 568, 613, 726, 775
SfaNI GCATC 3 cut(s) 14, 457, 494
SfcI CTRYAG 1 cut(s) 567
SinI GGWCC 2 cut(s) 120, 284
Sse9I AATT 6 cut(s) 59, 102, 179, 201, 520, 617
SsiI CCGC 2 cut(s) 371, 515
SspI AATATT 1 cut(s) 747
StyD4I CCNGG 2 cut(s) 421, 769
TaaI ACNGT 2 cut(s) 32, 294
TaqI TCGA 3 cut(s) 115, 193, 432
TasI AATT 6 cut(s) 59, 102, 179, 201, 520, 617
TauI GCSGC 1 cut(s) 517
TfiI GAWTC 4 cut(s) 11, 175, 641, 677
Tru1I TTAA 2 cut(s) 137, 360
Tru9I TTAA 2 cut(s) 137, 360
TscAI CASTG 2 cut(s) 299, 498
TseFI GTSAC 4 cut(s) 351, 550, 724, 773
TseI GCWGC 4 cut(s) 81, 206, 563, 566
Tsp45I GTSAC 4 cut(s) 351, 550, 724, 773
TspGWI ACGGA 2 cut(s) 30, 474
TspRI CASTG 2 cut(s) 299, 498
VpaK11BI GGWCC 2 cut(s) 120, 284
XagI CCTNNNNNAGG 2 cut(s) 146, 768
XapI RAATTY 2 cut(s) 520, 617
XcmI CCANNNNNNNNNTGG 1 cut(s) 241
XmnI GAANNNNTTC 2 cut(s) 620, 640
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.