MD14G1147800.v1.1
MYB Family

Myb/SANT-like DNA-binding domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr14
OG0016332
Physical Location & Seq
Forward (+)
24062078 .. 24063470
1393 bp
Loading structure...
UTR
Exon/CDS
Intron
MD14G1147800.v1.1.491

Sequence Viewer

Length: 1038 bp
ATGGAATTGGAGTCTATGAAACATGAAGCTGCCAGTCCTAGACCTGACCAACCTGACAAACAGCGAACGCCGGACGGGACTGGCAGCTTGGTCAGTGAAGACAAAACCAAAATCACGAGGCACCCTCGATGGACCCGACAAGAGACCTTTGTCCTCATAGAAGGCAAGAGGATCGTGGAGAATGTGGTCCAGAGGGGCCGGCGATCCACTTCAGCGTTGGGGACAGAAAATTTCGAACCCAAGTGGGATTTGGTCTCGTCTTACTGCAGGCAGCGCGGCGTGAGCAGATGGCCTGTTCAGTGCAGGAAAAGATGGAGCAATCTGCTTGTGGATTTTAAGAAAATCAGGAACTGGGAGGCACAGATAAATCAAGAGGCCGAGTCGTTTTGGGTGATGAGGAATGATGTGAGGAGGGAGAGGAGGCTGCCTGGTTTCTTTGATCGGGAGGTTTACAATGTGTTGGTTGGAAAGGAAGTGACTGCAATGGAAGCCTGTCCCCTGGCATTGTTTATGCCGGGGCAAACAGATGTGAAGGATGGTGATGGGACAGAGGACGCGGCTGCAGAGGAAGAGGATGAGGAGGAGGGACCTGAGAAAGATTTAAATGGCAGTCGAGATGATATGGCAGAAGATAGATTAAGTTCAGATTTTGAGGAGTCTGGGCAAGACGAGACAGCCAAGAAATCAAAGAACGAAAACCTTATGCAAGACAGCCCAACAAAAACAGTCACAACTCCAATGCCTAATTCAGGTGTGATAAAGGAGAAACGAAGTCTCGGATCAAAGACTTCCGGAGAAAATGTTTATCAGGAGAAATGGAAGCAGAGGCGGGTGTCAACAGATGAAAGCGAACACCGCAACATTGCCCAGCTGATCAAAGTTCTGGAAAGGAACAGCAACATGCTGAATGCGCAACTTGAAGCTCATAACATAAATTGCCATTTTGAGAGGGAACAAAGGAAGGAGCAAAACAATAGCATACTCGGTGCTCTCGGCAAGGTCACAGATGTTCTAGCAAGAATCGCTGACAAATTATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-bind_4

Protein Analysis

346

Amino Acids

39.62

Weight (kDa)

5.68

Isoelectric Point (pI)

53.02

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-bind_4 PF13837 42 - 132 1.7e-09 Myb/SANT-like DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016332)

Species Orthologous Gene IDs
fragaria_vesca FvH4_5g09440
malus_domestica MD06G1131400.v1.1 MD14G1147800.v1.1
prunus_persica Prupe.5G142400_v2.0.a1
pyrus_communis pycom06g12280
rosa_chinensis RchiOBHm_Chr7g0188751
rosa_laevigata RLG00000004664
rosa_multiflora Rmu_sc0042908.1_g000001
rosa_roxburghii Rroxscaffold_3G00266070
rosa_rugosa Rorug06G0493700
rosa_samantha Rh7AG098200 Rh7BG099700 Rh7CG101400 Rh7DG100000
rosa_wichuraiana Rw7G008460

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 912
AccB1I GGYRCC 1 cut(s) 120
AccII CGCG 2 cut(s) 276, 557
AccIII TCCGGA 1 cut(s) 791
AciI CCGC 4 cut(s) 276, 557, 829, 856
AclWI GGATC 3 cut(s) 179, 198, 787
AcsI RAATTY 1 cut(s) 229
AcuI CTGAAG 1 cut(s) 195
AfiI CCNNNNNNNGG 1 cut(s) 749
AgsI TTSAA 1 cut(s) 920
AjnI CCWGG 2 cut(s) 427, 498
AjuI GAANNNNNNNTTGG 2 cut(s) 730, 762
AluBI AGCT 4 cut(s) 29, 87, 871, 923
AluI AGCT 4 cut(s) 29, 87, 871, 923
Alw21I GWGCWC 1 cut(s) 991
Alw26I GTCTC 4 cut(s) 137, 259, 665, 779
AlwI GGATC 3 cut(s) 179, 198, 787
AlwNI CAGNNNCTG 1 cut(s) 351
Aor13HI TCCGGA 1 cut(s) 791
AoxI GGCC 3 cut(s) 196, 290, 375
ApeKI GCWGC 5 cut(s) 29, 84, 271, 424, 560
ApoI RAATTY 1 cut(s) 229
AspLEI GCGC 2 cut(s) 276, 913
AspS9I GGNCC 4 cut(s) 132, 187, 196, 587
AsuC2I CCSGG 1 cut(s) 516
AsuHPI GGTGA 2 cut(s) 403, 551
AsuII TTCGAA 1 cut(s) 234
AvaII GGWCC 3 cut(s) 132, 187, 587
BanI GGYRCC 1 cut(s) 120
BauI CACGAG 1 cut(s) 115
BbsI GAAGAC 1 cut(s) 105
Bbv12I GWGCWC 1 cut(s) 991
BbvI GCAGC 5 cut(s) 16, 96, 283, 411, 547
BccI CCATC 5 cut(s) 123, 282, 306, 530, 536
BcgI CGANNNNNNTGC 2 cut(s) 154, 188
BciT130I CCWGG 2 cut(s) 429, 500
BclI TGATCA 1 cut(s) 873
BcnI CCSGG 1 cut(s) 516
BcoDI GTCTC 4 cut(s) 137, 259, 665, 779
BfaI CTAG 2 cut(s) 39, 1013
BfmI CTRYAG 2 cut(s) 265, 561
BisI GCNGC 7 cut(s) 30, 85, 272, 277, 425, 558, 561
BlsI GCNGC 7 cut(s) 31, 86, 273, 278, 426, 559, 562
Bme1390I CCNGG 3 cut(s) 429, 500, 516
Bme18I GGWCC 3 cut(s) 132, 187, 587
BmgT120I GGNCC 4 cut(s) 132, 187, 196, 587
BmiI GGNNCC 4 cut(s) 122, 134, 197, 588
BmrFI CCNGG 3 cut(s) 429, 500, 516
BmrI ACTGGG 1 cut(s) 361
BmuI ACTGGG 1 cut(s) 361
BoxI GACNNNNGTC 1 cut(s) 149
BpiI GAAGAC 1 cut(s) 105
BplI GAGNNNNNCTC 2 cut(s) 109, 141
Bpu14I TTCGAA 1 cut(s) 234
BpuMI CCSGG 1 cut(s) 516
BsaI GGTCTC 2 cut(s) 137, 259
BsaJI CCNNGG 2 cut(s) 498, 515
BsaWI WCCGGW 1 cut(s) 791
BsaXI ACNNNNNCTCC 2 cut(s) 786, 816
Bsc4I CCNNNNNNNGG 1 cut(s) 749
Bse118I RCCGGY 1 cut(s) 198
Bse1I ACTGG 3 cut(s) 33, 85, 356
Bse3DI GCAATG 2 cut(s) 489, 861
BseAI TCCGGA 1 cut(s) 791
BseBI CCWGG 2 cut(s) 429, 500
BseDI CCNNGG 2 cut(s) 498, 515
BseGI GGATG 2 cut(s) 541, 580
BseLI CCNNNNNNNGG 1 cut(s) 749
BseMI GCAATG 2 cut(s) 489, 861
BseMII CTCAG 1 cut(s) 582
BseNI ACTGG 3 cut(s) 33, 85, 356
BseRI GAGGAG 5 cut(s) 424, 433, 593, 596, 668
BseXI GCAGC 5 cut(s) 16, 96, 283, 411, 547
BseYI CCCAGC 1 cut(s) 867
BsgI GTGCAG 1 cut(s) 322
Bsh1236I CGCG 2 cut(s) 276, 557
BshFI GGCC 3 cut(s) 198, 292, 377
BshNI GGYRCC 1 cut(s) 120
BsiHKAI GWGCWC 1 cut(s) 991
BsiSI CCGG 4 cut(s) 71, 199, 515, 792
BslFI GGGAC 5 cut(s) 91, 235, 480, 559, 600
BslI CCNNNNNNNGG 1 cut(s) 749
BsmAI GTCTC 4 cut(s) 137, 259, 665, 779
BsmFI GGGAC 5 cut(s) 91, 235, 480, 559, 600
BsmI GAATGC 1 cut(s) 913
BsnI GGCC 3 cut(s) 198, 292, 377
Bso31I GGTCTC 2 cut(s) 137, 259
Bsp119I TTCGAA 1 cut(s) 234
Bsp1286I GDGCHC 1 cut(s) 991
Bsp13I TCCGGA 1 cut(s) 791
Bsp143I GATC 5 cut(s) 171, 203, 439, 779, 873
BspACI CCGC 4 cut(s) 276, 557, 829, 856
BspANI GGCC 3 cut(s) 198, 292, 377
BspCNI CTCAG 1 cut(s) 583
BspEI TCCGGA 1 cut(s) 791
BspFNI CGCG 2 cut(s) 276, 557
BspLI GGNNCC 4 cut(s) 122, 134, 197, 588
BspMAI CTGCAG 2 cut(s) 269, 565
BspPI GGATC 3 cut(s) 179, 198, 787
BspT104I TTCGAA 1 cut(s) 234
BspT107I GGYRCC 1 cut(s) 120
BspTNI GGTCTC 2 cut(s) 137, 259
BsrDI GCAATG 2 cut(s) 489, 861
BsrFI RCCGGY 1 cut(s) 198
BsrI ACTGG 3 cut(s) 33, 85, 356
BssAI RCCGGY 1 cut(s) 198
BssECI CCNNGG 2 cut(s) 498, 515
BssMI GATC 5 cut(s) 171, 203, 439, 779, 873
BssSI CACGAG 1 cut(s) 115
Bst2BI CACGAG 1 cut(s) 115
Bst2UI CCWGG 2 cut(s) 429, 500
Bst4CI ACNGT 1 cut(s) 727
Bst6I CTCTTC 1 cut(s) 564
BstBI TTCGAA 1 cut(s) 234
BstC8I GCNNGC 2 cut(s) 200, 269
BstDEI CTNAG 1 cut(s) 591
BstENI CCTNNNNNAGG 1 cut(s) 747
BstF5I GGATG 2 cut(s) 541, 580
BstFNI CGCG 2 cut(s) 276, 557
BstHHI GCGC 2 cut(s) 276, 913
BstKTI GATC 5 cut(s) 174, 206, 442, 782, 876
BstMAI GTCTC 4 cut(s) 137, 259, 665, 779
BstMBI GATC 5 cut(s) 171, 203, 439, 779, 873
BstMWI GCNNNNNNNGC 6 cut(s) 273, 282, 488, 855, 910, 1022
BstNI CCWGG 2 cut(s) 429, 500
BstNSI RCATGY 1 cut(s) 904
BstPAI GACNNNNGTC 1 cut(s) 149
BstSCI CCNGG 3 cut(s) 427, 498, 514
BstSFI CTRYAG 2 cut(s) 265, 561
BstUI CGCG 2 cut(s) 276, 557
BstV1I GCAGC 5 cut(s) 16, 96, 283, 411, 547
BstV2I GAAGAC 1 cut(s) 105
BsuRI GGCC 3 cut(s) 198, 292, 377
BtsCI GGATG 2 cut(s) 541, 580
BtsIMutI CAGTG 2 cut(s) 100, 305
Cac8I GCNNGC 2 cut(s) 200, 269
CaiI CAGNNNCTG 1 cut(s) 351
CfoI GCGC 2 cut(s) 276, 913
Cfr10I RCCGGY 1 cut(s) 198
Cfr13I GGNCC 4 cut(s) 132, 187, 196, 587
CseI GACGC 1 cut(s) 563
CviAII CATG 2 cut(s) 23, 901
DdeI CTNAG 1 cut(s) 591
DpnI GATC 5 cut(s) 173, 205, 441, 781, 875
DpnII GATC 5 cut(s) 171, 203, 439, 779, 873
DraI TTTAAA 1 cut(s) 603
Eam1104I CTCTTC 1 cut(s) 564
EarI CTCTTC 1 cut(s) 564
Eco31I GGTCTC 2 cut(s) 137, 259
Eco47I GGWCC 3 cut(s) 132, 187, 587
Eco57I CTGAAG 1 cut(s) 195
EcoNI CCTNNNNNAGG 1 cut(s) 747
EcoO109I RGGNCCY 1 cut(s) 587
EcoRII CCWGG 2 cut(s) 427, 498
FaeI CATG 2 cut(s) 26, 904
FaqI GGGAC 5 cut(s) 91, 235, 480, 559, 600
FatI CATG 2 cut(s) 22, 900
FauI CCCGC 1 cut(s) 822
FbaI TGATCA 1 cut(s) 873
Fnu4HI GCNGC 7 cut(s) 30, 85, 272, 277, 425, 558, 561
FokI GGATG 2 cut(s) 548, 587
Fsp4HI GCNGC 7 cut(s) 30, 85, 272, 277, 425, 558, 561
FspBI CTAG 2 cut(s) 39, 1013
FspI TGCGCA 1 cut(s) 912
GlaI GCGC 2 cut(s) 275, 912
GluI GCNGC 7 cut(s) 30, 85, 272, 277, 425, 558, 561
GsaI CCCAGC 1 cut(s) 871
HaeIII GGCC 3 cut(s) 198, 292, 377
HapII CCGG 4 cut(s) 71, 199, 515, 792
HgaI GACGC 1 cut(s) 563
HhaI GCGC 2 cut(s) 276, 913
Hin1II CATG 2 cut(s) 26, 904
Hin6I GCGC 2 cut(s) 274, 911
HinP1I GCGC 2 cut(s) 274, 911
HincII GTYRAC 1 cut(s) 837
HindII GTYRAC 1 cut(s) 837
HinfI GANTC 4 cut(s) 11, 380, 656, 1020
HpaII CCGG 4 cut(s) 71, 199, 515, 792
HphI GGTGA 2 cut(s) 403, 551
Hpy166II GTNNAC 2 cut(s) 451, 837
Hpy188I TCNGA 2 cut(s) 646, 779
Hpy188III TCNNGA 9 cut(s) 115, 190, 346, 371, 443, 614, 792, 809, 884
Hpy8I GTNNAC 2 cut(s) 451, 837
HpyAV CCTTC 3 cut(s) 155, 526, 955
HpyCH4III ACNGT 1 cut(s) 727
HpyCH4V TGCA 5 cut(s) 267, 303, 482, 563, 706
HpyF10VI GCNNNNNNNGC 6 cut(s) 273, 282, 488, 855, 910, 1022
HpyF3I CTNAG 1 cut(s) 591
Hsp92II CATG 2 cut(s) 26, 904
HspAI GCGC 2 cut(s) 274, 911
Kpn2I TCCGGA 1 cut(s) 791
KroI GCCGGC 1 cut(s) 198
KroNI GCCGGC 1 cut(s) 200
Ksp22I TGATCA 1 cut(s) 873
Kzo9I GATC 5 cut(s) 171, 203, 439, 779, 873
LmnI GCTCC 2 cut(s) 315, 964
Lsp1109I GCAGC 5 cut(s) 16, 96, 283, 411, 547
MaeI CTAG 2 cut(s) 39, 1013
MaeIII GTNAC 3 cut(s) 475, 727, 1000
MalI GATC 5 cut(s) 173, 205, 441, 781, 875
MboI GATC 5 cut(s) 171, 203, 439, 779, 873
MboII GAAGA 3 cut(s) 110, 581, 641
MhlI GDGCHC 1 cut(s) 991
MluCI AATT 5 cut(s) 5, 229, 745, 934, 1031
MlyI GAGTC 3 cut(s) 20, 389, 665
MmeI TCCRAC 1 cut(s) 445
MroI TCCGGA 1 cut(s) 791
MroNI GCCGGC 1 cut(s) 198
MseI TTAA 3 cut(s) 336, 602, 638
MspA1I CMGCKG 1 cut(s) 871
MspI CCGG 4 cut(s) 71, 199, 515, 792
MspR9I CCNGG 3 cut(s) 429, 500, 516
Mva1269I GAATGC 1 cut(s) 913
MvaI CCWGG 2 cut(s) 429, 500
MvnI CGCG 2 cut(s) 276, 557
MwoI GCNNNNNNNGC 6 cut(s) 273, 282, 488, 855, 910, 1022
NaeI GCCGGC 1 cut(s) 200
NciI CCSGG 1 cut(s) 516
NdeII GATC 5 cut(s) 171, 203, 439, 779, 873
NgoMIV GCCGGC 1 cut(s) 198
NlaIII CATG 2 cut(s) 26, 904
NlaIV GGNNCC 4 cut(s) 122, 134, 197, 588
NmeAIII GCCGAG 2 cut(s) 403, 972
NmuCI GTSAC 3 cut(s) 475, 727, 1000
NsbI TGCGCA 1 cut(s) 912
NspI RCATGY 1 cut(s) 904
NspV TTCGAA 1 cut(s) 234
PcsI WCGNNNNNNNCGW 1 cut(s) 133
PctI GAATGC 1 cut(s) 913
PdiI GCCGGC 1 cut(s) 200
PfeI GAWTC 1 cut(s) 1020
PkrI GCNGC 7 cut(s) 31, 86, 273, 278, 426, 559, 562
PleI GAGTC 3 cut(s) 19, 388, 664
PpsI GAGTC 3 cut(s) 19, 388, 664
PpuMI RGGWCCY 1 cut(s) 587
PshAI GACNNNNGTC 1 cut(s) 149
Psp5II RGGWCCY 1 cut(s) 587
Psp6I CCWGG 2 cut(s) 427, 498
PspFI CCCAGC 1 cut(s) 867
PspGI CCWGG 2 cut(s) 427, 498
PspN4I GGNNCC 4 cut(s) 122, 134, 197, 588
PspPI GGNCC 4 cut(s) 132, 187, 196, 587
PspPPI RGGWCCY 1 cut(s) 587
PstI CTGCAG 2 cut(s) 269, 565
PstNI CAGNNNCTG 1 cut(s) 351
PvuII CAGCTG 1 cut(s) 871
SaqAI TTAA 3 cut(s) 336, 602, 638
SatI GCNGC 7 cut(s) 30, 85, 272, 277, 425, 558, 561
Sau3AI GATC 5 cut(s) 171, 203, 439, 779, 873
Sau96I GGNCC 4 cut(s) 132, 187, 196, 587
SchI GAGTC 3 cut(s) 20, 389, 665
ScrFI CCNGG 3 cut(s) 429, 500, 516
SduI GDGCHC 1 cut(s) 991
SfcI CTRYAG 2 cut(s) 265, 561
SfuI TTCGAA 1 cut(s) 234
SinI GGWCC 3 cut(s) 132, 187, 587
SmiI ATTTAAAT 1 cut(s) 603
Sse9I AATT 5 cut(s) 5, 229, 745, 934, 1031
SsiI CCGC 4 cut(s) 276, 557, 829, 856
SspMI CTAG 2 cut(s) 39, 1013
StyD4I CCNGG 3 cut(s) 427, 498, 514
SwaI ATTTAAAT 1 cut(s) 603
TaaI ACNGT 1 cut(s) 727
TaqI TCGA 3 cut(s) 127, 234, 613
TasI AATT 5 cut(s) 5, 229, 745, 934, 1031
TauI GCSGC 2 cut(s) 279, 560
TfiI GAWTC 1 cut(s) 1020
Tru1I TTAA 3 cut(s) 336, 602, 638
Tru9I TTAA 3 cut(s) 336, 602, 638
TscAI CASTG 2 cut(s) 100, 305
TseFI GTSAC 3 cut(s) 475, 727, 1000
TseI GCWGC 5 cut(s) 29, 84, 271, 424, 560
Tsp45I GTSAC 3 cut(s) 475, 727, 1000
TspDTI ATGAA 3 cut(s) 32, 39, 858
TspRI CASTG 2 cut(s) 100, 305
VpaK11BI GGWCC 3 cut(s) 132, 187, 587
XagI CCTNNNNNAGG 1 cut(s) 747
XapI RAATTY 1 cut(s) 229
XceI RCATGY 1 cut(s) 904
XcmI CCANNNNNNNNNTGG 2 cut(s) 214, 247
XspI CTAG 2 cut(s) 39, 1013
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.