Rh7AG098200
MYB Family

Myb/SANT-like DNA-binding domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7A
OG0016332
Physical Location & Seq
Forward (+)
7470301 .. 7471074
774 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7AG098200.1

Sequence Viewer

Length: 774 bp
ATGGCATCAGACTCGAGCAAACACGAAGACGGTGGTTCTCCGTCCGACCAAGTTGAGAAATTGCAAGTGCCAAGTGGGAGCAGCCAAGAGAGAATGAAAACAATTAGGCACCCTCGATGGACCAGAAAAGAGACCTTAACCCTTATAGAGGGCAAGAAGGTTATAGAAAATGGGATTCAATTTCAAAAGGGTCGAAGATCAATTGCAGCCTTGGGGCCGGACCCTGTTGAACCCAAGTGGGATTTGGTATCATCGTTTTGCAAACAGCGTGGCGTAAGCAGAGGACCGGTACAGTGCAGGAAGAGATGGAGCAATCTTCTTGTTGATTTCAAGAAAATCAGGAACTGGGAGTCACAGATTAAGGGAGAGGCGGAGTCTTTTTGGGTGATGAGGAATGATTTGAGGAGAGACAAGAAACTTCCAGGTTTCTTCGATAGGGATGTTTACAATGTCTTGGATGGAAAAGATGCGACTGCAAAACCAGCATCTCCACTGGCAGTCCTATGCCCAATGCCGCTAAATTCAATACCTATGGAAGATGTGTGTCATGTGACTGAGGAGGCAGCTGCAGAAGAAGAGGAAGAAGAAGTGGAGGAGGAGGAACCTGAGAAATTTTTCAATAGCATTCGAAATGATTCAACAGAAAATGATCTGTTTTCAGATTTTGAGGAATCTGGGCAAGAGGAGACAACCATAAACTCCAAAAAGGAACAAAAGGTGACAGGGAGTCCAACAAAAATATTCACAACTCCTGTGCCTACTCCAGGTGACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-bind_4

Protein Analysis

257

Amino Acids

29.1

Weight (kDa)

5.15

Isoelectric Point (pI)

63.42

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-bind_4 PF13837 38 - 130 3.6e-09 Myb/SANT-like DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0016332)

Species Orthologous Gene IDs
fragaria_vesca FvH4_5g09440
malus_domestica MD06G1131400.v1.1 MD14G1147800.v1.1
prunus_persica Prupe.5G142400_v2.0.a1
pyrus_communis pycom06g12280
rosa_chinensis RchiOBHm_Chr7g0188751
rosa_laevigata RLG00000004664
rosa_multiflora Rmu_sc0042908.1_g000001
rosa_roxburghii Rroxscaffold_3G00266070
rosa_rugosa Rorug06G0493700
rosa_samantha Rh7AG098200 Rh7BG099700 Rh7CG101400 Rh7DG100000
rosa_wichuraiana Rw7G008460

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 108
AciI CCGC 2 cut(s) 371, 515
AcsI RAATTY 2 cut(s) 520, 611
AfaI GTAC 1 cut(s) 291
AfiI CCNNNNNNNGG 2 cut(s) 148, 764
AgeI ACCGGT 1 cut(s) 286
AgsI TTSAA 7 cut(s) 179, 185, 230, 331, 525, 619, 639
AhdI GACNNNNNGTC 1 cut(s) 726
AjnI CCWGG 2 cut(s) 421, 763
AluBI AGCT 1 cut(s) 566
AluI AGCT 1 cut(s) 566
Alw26I GTCTC 3 cut(s) 125, 402, 680
AlwNI CAGNNNCTG 1 cut(s) 345
Ama87I CYCGRG 1 cut(s) 13
AoxI GGCC 1 cut(s) 215
ApeKI GCWGC 4 cut(s) 81, 206, 563, 566
ApoI RAATTY 2 cut(s) 520, 611
AsiGI ACCGGT 1 cut(s) 286
Asp700I GAANNNNTTC 2 cut(s) 614, 634
AspS9I GGNCC 4 cut(s) 120, 215, 220, 284
AsuHPI GGTGA 2 cut(s) 397, 730
AsuII TTCGAA 1 cut(s) 628
AvaI CYCGRG 1 cut(s) 13
AvaII GGWCC 3 cut(s) 120, 220, 284
BanI GGYRCC 1 cut(s) 108
BbsI GAAGAC 1 cut(s) 33
BbvI GCAGC 4 cut(s) 93, 218, 553, 575
BccI CCATC 3 cut(s) 111, 300, 452
BcgI CGANNNNNNTGC 1 cut(s) 28
BciT130I CCWGG 2 cut(s) 423, 765
BcoDI GTCTC 3 cut(s) 125, 402, 680
BfmI CTRYAG 1 cut(s) 567
BisI GCNGC 5 cut(s) 82, 207, 515, 564, 567
BlsI GCNGC 5 cut(s) 83, 208, 516, 565, 568
Bme1390I CCNGG 2 cut(s) 423, 765
Bme18I GGWCC 3 cut(s) 120, 220, 284
BmeRI GACNNNNNGTC 1 cut(s) 726
BmeT110I CYCGRG 1 cut(s) 13
BmgT120I GGNCC 4 cut(s) 120, 215, 220, 284
BmiI GGNNCC 4 cut(s) 110, 216, 222, 603
BmrFI CCNGG 2 cut(s) 423, 765
BmrI ACTGGG 1 cut(s) 355
BmsI GCATC 3 cut(s) 14, 457, 494
BmuI ACTGGG 1 cut(s) 355
BpiI GAAGAC 1 cut(s) 33
BpmI CTGGAG 1 cut(s) 747
Bpu14I TTCGAA 1 cut(s) 628
BsaI GGTCTC 1 cut(s) 125
BsaJI CCNNGG 1 cut(s) 210
BsaWI WCCGGW 1 cut(s) 286
Bsc4I CCNNNNNNNGG 2 cut(s) 148, 764
Bse118I RCCGGY 1 cut(s) 286
Bse1I ACTGG 2 cut(s) 350, 498
BseBI CCWGG 2 cut(s) 423, 765
BseDI CCNNGG 1 cut(s) 210
BseGI GGATG 2 cut(s) 445, 463
BseLI CCNNNNNNNGG 2 cut(s) 148, 764
BseMII CTCAG 2 cut(s) 546, 597
BseNI ACTGG 2 cut(s) 350, 498
BseRI GAGGAG 5 cut(s) 418, 572, 608, 611, 698
BseXI GCAGC 4 cut(s) 93, 218, 553, 575
BsgI GTGCAG 1 cut(s) 316
BshFI GGCC 1 cut(s) 217
BshNI GGYRCC 1 cut(s) 108
BshTI ACCGGT 1 cut(s) 286
BsiHKCI CYCGRG 1 cut(s) 13
BsiSI CCGG 2 cut(s) 218, 287
BslI CCNNNNNNNGG 2 cut(s) 148, 764
BsmAI GTCTC 3 cut(s) 125, 402, 680
BsmI GAATGC 1 cut(s) 624
BsnI GGCC 1 cut(s) 217
Bso31I GGTCTC 1 cut(s) 125
BsoBI CYCGRG 1 cut(s) 13
Bsp119I TTCGAA 1 cut(s) 628
Bsp143I GATC 2 cut(s) 197, 649
BspACI CCGC 2 cut(s) 371, 515
BspANI GGCC 1 cut(s) 217
BspCNI CTCAG 2 cut(s) 547, 598
BspLI GGNNCC 4 cut(s) 110, 216, 222, 603
BspMAI CTGCAG 1 cut(s) 571
BspT104I TTCGAA 1 cut(s) 628
BspT107I GGYRCC 1 cut(s) 108
BspTNI GGTCTC 1 cut(s) 125
BsrFI RCCGGY 1 cut(s) 286
BsrI ACTGG 2 cut(s) 350, 498
BssAI RCCGGY 1 cut(s) 286
BssECI CCNNGG 1 cut(s) 210
BssMI GATC 2 cut(s) 197, 649
BssT1I CCWWGG 1 cut(s) 210
Bst2UI CCWGG 2 cut(s) 423, 765
Bst4CI ACNGT 2 cut(s) 32, 294
Bst6I CTCTTC 2 cut(s) 296, 570
BstBI TTCGAA 1 cut(s) 628
BstDEI CTNAG 2 cut(s) 555, 606
BstENI CCTNNNNNAGG 2 cut(s) 146, 762
BstF5I GGATG 2 cut(s) 445, 463
BstKTI GATC 2 cut(s) 200, 652
BstMAI GTCTC 3 cut(s) 125, 402, 680
BstMBI GATC 2 cut(s) 197, 649
BstMWI GCNNNNNNNGC 1 cut(s) 482
BstNI CCWGG 2 cut(s) 423, 765
BstSCI CCNGG 2 cut(s) 421, 763
BstSFI CTRYAG 1 cut(s) 567
BstV1I GCAGC 4 cut(s) 93, 218, 553, 575
BstV2I GAAGAC 1 cut(s) 33
BsuRI GGCC 1 cut(s) 217
BtsCI GGATG 2 cut(s) 445, 463
BtsIMutI CAGTG 2 cut(s) 299, 491
CaiI CAGNNNCTG 1 cut(s) 345
Cfr10I RCCGGY 1 cut(s) 286
Cfr13I GGNCC 4 cut(s) 120, 215, 220, 284
Csp6I GTAC 1 cut(s) 290
CspAI ACCGGT 1 cut(s) 286
CspCI CAANNNNNGTGG 2 cut(s) 250, 285
CviAII CATG 1 cut(s) 548
CviJI RGCY 4 cut(s) 84, 209, 217, 566
CviKI_1 RGCY 4 cut(s) 84, 209, 217, 566
CviQI GTAC 1 cut(s) 290
DdeI CTNAG 2 cut(s) 555, 606
DpnI GATC 2 cut(s) 199, 651
DpnII GATC 2 cut(s) 197, 649
DriI GACNNNNNGTC 1 cut(s) 726
Eam1104I CTCTTC 2 cut(s) 296, 570
Eam1105I GACNNNNNGTC 1 cut(s) 726
EarI CTCTTC 2 cut(s) 296, 570
EciI GGCGGA 1 cut(s) 386
Eco130I CCWWGG 1 cut(s) 210
Eco31I GGTCTC 1 cut(s) 125
Eco47I GGWCC 3 cut(s) 120, 220, 284
Eco88I CYCGRG 1 cut(s) 13
EcoNI CCTNNNNNAGG 2 cut(s) 146, 762
EcoRII CCWGG 2 cut(s) 421, 763
EcoT14I CCWWGG 1 cut(s) 210
ErhI CCWWGG 1 cut(s) 210
FaeI CATG 1 cut(s) 551
FaiI YATR 6 cut(s) 146, 164, 505, 533, 549, 695
FatI CATG 1 cut(s) 547
Fnu4HI GCNGC 5 cut(s) 82, 207, 515, 564, 567
FokI GGATG 2 cut(s) 452, 470
Fsp4HI GCNGC 5 cut(s) 82, 207, 515, 564, 567
GluI GCNGC 5 cut(s) 82, 207, 515, 564, 567
GsuI CTGGAG 1 cut(s) 747
HaeIII GGCC 1 cut(s) 217
HapII CCGG 2 cut(s) 218, 287
Hin1II CATG 1 cut(s) 551
HinfI GANTC 7 cut(s) 11, 175, 350, 374, 635, 671, 727
HpaII CCGG 2 cut(s) 218, 287
HphI GGTGA 2 cut(s) 397, 730
Hpy166II GTNNAC 1 cut(s) 445
Hpy188I TCNGA 3 cut(s) 10, 46, 661
Hpy188III TCNNGA 2 cut(s) 331, 340
Hpy8I GTNNAC 1 cut(s) 445
HpyAV CCTTC 1 cut(s) 151
HpyCH4III ACNGT 2 cut(s) 32, 294
HpyCH4V TGCA 6 cut(s) 64, 206, 261, 297, 476, 569
HpyF10VI GCNNNNNNNGC 1 cut(s) 482
HpyF3I CTNAG 2 cut(s) 555, 606
Hsp92II CATG 1 cut(s) 551
Kzo9I GATC 2 cut(s) 197, 649
LmnI GCTCC 2 cut(s) 78, 309
Lsp1109I GCAGC 4 cut(s) 93, 218, 553, 575
LweI GCATC 3 cut(s) 14, 457, 494
MaeIII GTNAC 4 cut(s) 351, 550, 718, 767
MalI GATC 2 cut(s) 199, 651
MboI GATC 2 cut(s) 197, 649
MfeI CAATTG 1 cut(s) 201
MluCI AATT 6 cut(s) 59, 102, 179, 201, 520, 611
MlyI GAGTC 4 cut(s) 5, 359, 383, 736
MmeI TCCRAC 2 cut(s) 69, 755
MroXI GAANNNNTTC 2 cut(s) 614, 634
MseI TTAA 2 cut(s) 137, 360
MspA1I CMGCKG 1 cut(s) 566
MspI CCGG 2 cut(s) 218, 287
MspR9I CCNGG 2 cut(s) 423, 765
MunI CAATTG 1 cut(s) 201
Mva1269I GAATGC 1 cut(s) 624
MvaI CCWGG 2 cut(s) 423, 765
MwoI GCNNNNNNNGC 1 cut(s) 482
NdeII GATC 2 cut(s) 197, 649
NlaIII CATG 1 cut(s) 551
NlaIV GGNNCC 4 cut(s) 110, 216, 222, 603
NmuCI GTSAC 4 cut(s) 351, 550, 718, 767
NspV TTCGAA 1 cut(s) 628
PaeR7I CTCGAG 1 cut(s) 13
PctI GAATGC 1 cut(s) 624
PdmI GAANNNNTTC 2 cut(s) 614, 634
PfeI GAWTC 3 cut(s) 175, 635, 671
PinAI ACCGGT 1 cut(s) 286
PkrI GCNGC 5 cut(s) 83, 208, 516, 565, 568
PleI GAGTC 4 cut(s) 5, 358, 382, 735
PpsI GAGTC 4 cut(s) 5, 358, 382, 735
Psp6I CCWGG 2 cut(s) 421, 763
PspGI CCWGG 2 cut(s) 421, 763
PspN4I GGNNCC 4 cut(s) 110, 216, 222, 603
PspPI GGNCC 4 cut(s) 120, 215, 220, 284
PspXI VCTCGAGB 1 cut(s) 13
PstI CTGCAG 1 cut(s) 571
PstNI CAGNNNCTG 1 cut(s) 345
PvuII CAGCTG 1 cut(s) 566
RsaI GTAC 1 cut(s) 291
RsaNI GTAC 1 cut(s) 290
SaqAI TTAA 2 cut(s) 137, 360
SatI GCNGC 5 cut(s) 82, 207, 515, 564, 567
Sau3AI GATC 2 cut(s) 197, 649
Sau96I GGNCC 4 cut(s) 120, 215, 220, 284
SchI GAGTC 4 cut(s) 5, 359, 383, 736
ScrFI CCNGG 2 cut(s) 423, 765
SetI ASST 8 cut(s) 137, 162, 427, 532, 568, 607, 720, 769
SfaNI GCATC 3 cut(s) 14, 457, 494
SfcI CTRYAG 1 cut(s) 567
Sfr274I CTCGAG 1 cut(s) 13
SfuI TTCGAA 1 cut(s) 628
SinI GGWCC 3 cut(s) 120, 220, 284
SlaI CTCGAG 1 cut(s) 13
SmlI CTYRAG 1 cut(s) 13
SmoI CTYRAG 1 cut(s) 13
Sse9I AATT 6 cut(s) 59, 102, 179, 201, 520, 611
SsiI CCGC 2 cut(s) 371, 515
SspI AATATT 1 cut(s) 741
StyD4I CCNGG 2 cut(s) 421, 763
StyI CCWWGG 1 cut(s) 210
TaaI ACNGT 2 cut(s) 32, 294
TaqI TCGA 5 cut(s) 14, 115, 193, 432, 628
TasI AATT 6 cut(s) 59, 102, 179, 201, 520, 611
TauI GCSGC 1 cut(s) 517
TfiI GAWTC 3 cut(s) 175, 635, 671
Tru1I TTAA 2 cut(s) 137, 360
Tru9I TTAA 2 cut(s) 137, 360
TscAI CASTG 2 cut(s) 299, 498
TseFI GTSAC 4 cut(s) 351, 550, 718, 767
TseI GCWGC 4 cut(s) 81, 206, 563, 566
Tsp45I GTSAC 4 cut(s) 351, 550, 718, 767
TspDTI ATGAA 1 cut(s) 110
TspGWI ACGGA 1 cut(s) 30
TspRI CASTG 2 cut(s) 299, 498
VpaK11BI GGWCC 3 cut(s) 120, 220, 284
XagI CCTNNNNNAGG 2 cut(s) 146, 762
XapI RAATTY 2 cut(s) 520, 611
XcmI CCANNNNNNNNNTGG 1 cut(s) 241
XhoI CTCGAG 1 cut(s) 13
XmnI GAANNNNTTC 2 cut(s) 614, 634
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.