FvH4_5g09440
MYB Family

Myb/SANT-like DNA-binding domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb5
OG0016332
Physical Location & Seq
Reverse (-)
5473299 .. 5474813
1515 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_5g09440.t1

Sequence Viewer

Length: 1083 bp
ATGGCATCAAACTCAAGCAAACATGAAGAGGGTGGTTCTCCGTCCGATCAAGTTGAGAAATCACAAGTGCCAAGTGGGAGCAGTGAAGAGAGAACGAAAACAATTAGGCACCCTCGATGGACCAGACATGAGACCTTGGTCCTTATAGAGGGCAAGAAGGTTATAGAAAATGGGATTCAATTTCAAAAGGGTCGAAGATCGATTGCTGCCTTGGGAAAGGACCCTGTTGAACCCAAGTGGGATTTGATATCATCGTTTTGCAGACAGCGTGGCATGAGCAGAGGACCGGTTCAGTGCAGGAAGAGATGGAGTAATCTTCTTGTTGATTTCAAGAAAATCAGAAACTGGGAGTCACAGATTAAGGGAGAGGCAGAGTCTTTTTGGGTAATGAGGAATGATTTGAGGAGAGACAAGAAACTTCCAGGTTTCTTCGATAGGGAAGTCTACGATGTCTTGGATGGAAAAGATGTGACTGCAACACCAGCATTTCCATTGGCAGTGATATACCCAGTGCCACTAAATTCAATGCCTATGGAAGATGCGAGTCATGAAACTATGGAGGCAGCTGCAGAAGAAGAGGAAGAAGAACAAGAAGAAGAAGACGCGGAGGAGGAAGAACCTGAGAAATTTTTCAACAGCATTCGAAATGATTCAACCGAAGATGGTCTGTTTTCAGATTTTGAGGAATCTGGGCAGGAGGAGACTGCCATAAACTCCAAAAAGGAACAAAAGGTGACAGAGAGTCCAACAAAAACATCCACAACTCCTGTGTCTACTCCAGGTCCTGTAAAAGGGAAACGAGGGCTAGGGTCAGATACCCGGAGAGGATGTGTCTCTCAGGAGAAACAGAAACAGAGGCGGTTGTCAAGAGATGGATGTGAAGACAACTGCACTGACCAGCTGATCAGAGTTATGGAGAGAAATAGCAAAATGATGACTGCTCAACTAGAAGCTCATAACAAAAACAGCCAATTGGAAAGGGAGCAAAACAAGGAGCATAACAACAACTTACTCACTGCAATAAAAAATGTCACAGATGCTCTGGTAAGAATTGCAGACAAGTTGTCAACAGAAAAATCCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-bind_4

Protein Analysis

361

Amino Acids

40.95

Weight (kDa)

5.49

Isoelectric Point (pI)

64.72

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-bind_4 PF13837 38 - 130 2.1e-09 Myb/SANT-like DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016332)

Species Orthologous Gene IDs
fragaria_vesca FvH4_5g09440
malus_domestica MD06G1131400.v1.1 MD14G1147800.v1.1
prunus_persica Prupe.5G142400_v2.0.a1
pyrus_communis pycom06g12280
rosa_chinensis RchiOBHm_Chr7g0188751
rosa_laevigata RLG00000004664
rosa_multiflora Rmu_sc0042908.1_g000001
rosa_roxburghii Rroxscaffold_3G00266070
rosa_rugosa Rorug06G0493700
rosa_samantha Rh7AG098200 Rh7BG099700 Rh7CG101400 Rh7DG100000
rosa_wichuraiana Rw7G008460

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 108
AccI GTMKAC 2 cut(s) 444, 773
AccII CGCG 1 cut(s) 605
AciI CCGC 2 cut(s) 605, 859
AcsI RAATTY 2 cut(s) 520, 626
AfiI CCNNNNNNNGG 2 cut(s) 148, 791
AgeI ACCGGT 1 cut(s) 286
AgsI TTSAA 7 cut(s) 179, 185, 230, 331, 525, 634, 654
AhdI GACNNNNNGTC 2 cut(s) 741, 1063
AjnI CCWGG 2 cut(s) 421, 778
AluBI AGCT 3 cut(s) 566, 901, 953
AluI AGCT 3 cut(s) 566, 901, 953
Alw26I GTCTC 4 cut(s) 125, 402, 695, 838
AlwNI CAGNNNCTG 2 cut(s) 345, 785
ApeKI GCWGC 3 cut(s) 206, 563, 566
ApoI RAATTY 2 cut(s) 520, 626
AsiGI ACCGGT 1 cut(s) 286
Asp700I GAANNNNTTC 2 cut(s) 629, 649
AspS9I GGNCC 5 cut(s) 120, 139, 220, 284, 782
AsuC2I CCSGG 1 cut(s) 820
AsuHPI GGTGA 1 cut(s) 745
AsuII TTCGAA 1 cut(s) 643
AvaII GGWCC 5 cut(s) 120, 139, 220, 284, 782
BanI GGYRCC 1 cut(s) 108
BbsI GAAGAC 2 cut(s) 606, 888
BbvI GCAGC 3 cut(s) 193, 553, 575
BccI CCATC 5 cut(s) 111, 300, 452, 656, 866
BciT130I CCWGG 2 cut(s) 423, 780
BclI TGATCA 1 cut(s) 903
BcnI CCSGG 1 cut(s) 820
BcoDI GTCTC 4 cut(s) 125, 402, 695, 838
BfaI CTAG 3 cut(s) 806, 947, 1081
BfmI CTRYAG 1 cut(s) 567
BisI GCNGC 3 cut(s) 207, 564, 567
BlsI GCNGC 3 cut(s) 208, 565, 568
Bme1390I CCNGG 3 cut(s) 423, 780, 820
Bme18I GGWCC 5 cut(s) 120, 139, 220, 284, 782
BmeRI GACNNNNNGTC 2 cut(s) 741, 1063
BmgT120I GGNCC 5 cut(s) 120, 139, 220, 284, 782
BmiI GGNNCC 2 cut(s) 110, 222
BmrFI CCNGG 3 cut(s) 423, 780, 820
BmrI ACTGGG 2 cut(s) 355, 503
BmsI GCATC 3 cut(s) 14, 529, 1027
BmuI ACTGGG 2 cut(s) 355, 503
BoxI GACNNNNGTC 1 cut(s) 137
BpiI GAAGAC 2 cut(s) 606, 888
BpmI CTGGAG 1 cut(s) 762
Bpu14I TTCGAA 1 cut(s) 643
BpuMI CCSGG 1 cut(s) 820
Bsa29I ATCGAT 1 cut(s) 200
BsaI GGTCTC 1 cut(s) 125
BsaJI CCNNGG 2 cut(s) 135, 210
BsaWI WCCGGW 1 cut(s) 286
BsaXI ACNNNNNCTCC 2 cut(s) 814, 844
Bsc4I CCNNNNNNNGG 2 cut(s) 148, 791
Bse118I RCCGGY 1 cut(s) 286
Bse1I ACTGG 2 cut(s) 350, 509
BseBI CCWGG 2 cut(s) 423, 780
BseCI ATCGAT 1 cut(s) 200
BseDI CCNNGG 2 cut(s) 135, 210
BseGI GGATG 4 cut(s) 463, 755, 833, 881
BseLI CCNNNNNNNGG 2 cut(s) 148, 791
BseMII CTCAG 2 cut(s) 612, 851
BseNI ACTGG 2 cut(s) 350, 509
BseRI GAGGAG 3 cut(s) 418, 623, 713
BseXI GCAGC 3 cut(s) 193, 553, 575
BsgI GTGCAG 2 cut(s) 316, 874
Bsh1236I CGCG 1 cut(s) 605
BshNI GGYRCC 1 cut(s) 108
BshTI ACCGGT 1 cut(s) 286
BshVI ATCGAT 1 cut(s) 200
BsiSI CCGG 2 cut(s) 287, 820
BslI CCNNNNNNNGG 2 cut(s) 148, 791
BsmAI GTCTC 4 cut(s) 125, 402, 695, 838
BsmI GAATGC 1 cut(s) 639
Bso31I GGTCTC 1 cut(s) 125
Bsp119I TTCGAA 1 cut(s) 643
Bsp143I GATC 3 cut(s) 46, 197, 903
BspACI CCGC 2 cut(s) 605, 859
BspCNI CTCAG 2 cut(s) 613, 850
BspDI ATCGAT 1 cut(s) 200
BspFNI CGCG 1 cut(s) 605
BspHI TCATGA 1 cut(s) 547
BspLI GGNNCC 2 cut(s) 110, 222
BspMAI CTGCAG 1 cut(s) 571
BspT104I TTCGAA 1 cut(s) 643
BspT107I GGYRCC 1 cut(s) 108
BspTNI GGTCTC 1 cut(s) 125
BsrFI RCCGGY 1 cut(s) 286
BsrI ACTGG 2 cut(s) 350, 509
BssAI RCCGGY 1 cut(s) 286
BssECI CCNNGG 2 cut(s) 135, 210
BssMI GATC 3 cut(s) 46, 197, 903
BssT1I CCWWGG 2 cut(s) 135, 210
Bst2UI CCWGG 2 cut(s) 423, 780
Bst6I CTCTTC 4 cut(s) 21, 81, 296, 570
BstBI TTCGAA 1 cut(s) 643
BstDEI CTNAG 2 cut(s) 621, 837
BstENI CCTNNNNNAGG 2 cut(s) 146, 789
BstF5I GGATG 4 cut(s) 463, 755, 833, 881
BstFNI CGCG 1 cut(s) 605
BstKTI GATC 3 cut(s) 49, 200, 906
BstMAI GTCTC 4 cut(s) 125, 402, 695, 838
BstMBI GATC 3 cut(s) 46, 197, 903
BstMWI GCNNNNNNNGC 1 cut(s) 482
BstNI CCWGG 2 cut(s) 423, 780
BstPAI GACNNNNGTC 1 cut(s) 137
BstSCI CCNGG 3 cut(s) 421, 778, 818
BstSFI CTRYAG 1 cut(s) 567
BstUI CGCG 1 cut(s) 605
BstV1I GCAGC 3 cut(s) 193, 553, 575
BstV2I GAAGAC 2 cut(s) 606, 888
Bsu15I ATCGAT 1 cut(s) 200
BsuTUI ATCGAT 1 cut(s) 200
BtsCI GGATG 4 cut(s) 463, 755, 833, 881
BtsI GCAGTG 3 cut(s) 88, 504, 1014
BtsIMutI CAGTG 6 cut(s) 88, 299, 504, 516, 891, 1014
CaiI CAGNNNCTG 2 cut(s) 345, 785
CciI TCATGA 1 cut(s) 547
Cfr10I RCCGGY 1 cut(s) 286
Cfr13I GGNCC 5 cut(s) 120, 139, 220, 284, 782
ClaI ATCGAT 1 cut(s) 200
CseI GACGC 1 cut(s) 611
CspAI ACCGGT 1 cut(s) 286
CviAII CATG 4 cut(s) 23, 128, 274, 548
CviJI RGCY 5 cut(s) 566, 805, 901, 953, 969
CviKI_1 RGCY 5 cut(s) 566, 805, 901, 953, 969
DdeI CTNAG 2 cut(s) 621, 837
DpnI GATC 3 cut(s) 48, 199, 905
DpnII GATC 3 cut(s) 46, 197, 903
DriI GACNNNNNGTC 2 cut(s) 741, 1063
Eam1104I CTCTTC 4 cut(s) 21, 81, 296, 570
Eam1105I GACNNNNNGTC 2 cut(s) 741, 1063
EarI CTCTTC 4 cut(s) 21, 81, 296, 570
Eco130I CCWWGG 2 cut(s) 135, 210
Eco31I GGTCTC 1 cut(s) 125
Eco32I GATATC 1 cut(s) 249
Eco47I GGWCC 5 cut(s) 120, 139, 220, 284, 782
EcoNI CCTNNNNNAGG 2 cut(s) 146, 789
EcoO109I RGGNCCY 2 cut(s) 220, 782
EcoRII CCWGG 2 cut(s) 421, 778
EcoRV GATATC 1 cut(s) 249
EcoT14I CCWWGG 2 cut(s) 135, 210
ErhI CCWWGG 2 cut(s) 135, 210
FaeI CATG 4 cut(s) 26, 131, 277, 551
FatI CATG 4 cut(s) 22, 127, 273, 547
FbaI TGATCA 1 cut(s) 903
FblI GTMKAC 2 cut(s) 444, 773
Fnu4HI GCNGC 3 cut(s) 207, 564, 567
FokI GGATG 4 cut(s) 470, 742, 840, 888
Fsp4HI GCNGC 3 cut(s) 207, 564, 567
FspBI CTAG 3 cut(s) 806, 947, 1081
GluI GCNGC 3 cut(s) 207, 564, 567
GsuI CTGGAG 1 cut(s) 762
HapII CCGG 2 cut(s) 287, 820
HgaI GACGC 1 cut(s) 611
Hin1II CATG 4 cut(s) 26, 131, 277, 551
HincII GTYRAC 1 cut(s) 1068
HindII GTYRAC 1 cut(s) 1068
HinfI GANTC 7 cut(s) 175, 350, 374, 544, 650, 686, 742
HpaII CCGG 2 cut(s) 287, 820
HphI GGTGA 1 cut(s) 745
Hpy166II GTNNAC 3 cut(s) 445, 774, 1068
Hpy188I TCNGA 5 cut(s) 46, 341, 676, 814, 908
Hpy188III TCNNGA 4 cut(s) 331, 548, 839, 867
Hpy8I GTNNAC 3 cut(s) 445, 774, 1068
HpyAV CCTTC 1 cut(s) 151
HpyCH4V TGCA 7 cut(s) 261, 297, 476, 569, 891, 1019, 1055
HpyF10VI GCNNNNNNNGC 1 cut(s) 482
HpyF3I CTNAG 2 cut(s) 621, 837
Hsp92II CATG 4 cut(s) 26, 131, 277, 551
Ksp22I TGATCA 1 cut(s) 903
Kzo9I GATC 3 cut(s) 46, 197, 903
LmnI GCTCC 3 cut(s) 78, 982, 994
Lsp1109I GCAGC 3 cut(s) 193, 553, 575
LweI GCATC 3 cut(s) 14, 529, 1027
MaeI CTAG 3 cut(s) 806, 947, 1081
MaeIII GTNAC 4 cut(s) 351, 469, 733, 1030
MalI GATC 3 cut(s) 48, 199, 905
MboI GATC 3 cut(s) 46, 197, 903
MfeI CAATTG 1 cut(s) 971
MluCI AATT 6 cut(s) 102, 179, 520, 626, 971, 1050
MlyI GAGTC 4 cut(s) 359, 383, 553, 751
MmeI TCCRAC 1 cut(s) 770
MroXI GAANNNNTTC 2 cut(s) 629, 649
MseI TTAA 1 cut(s) 360
MspA1I CMGCKG 2 cut(s) 566, 901
MspI CCGG 2 cut(s) 287, 820
MspR9I CCNGG 3 cut(s) 423, 780, 820
MunI CAATTG 1 cut(s) 971
Mva1269I GAATGC 1 cut(s) 639
MvaI CCWGG 2 cut(s) 423, 780
MvnI CGCG 1 cut(s) 605
MwoI GCNNNNNNNGC 1 cut(s) 482
NciI CCSGG 1 cut(s) 820
NdeII GATC 3 cut(s) 46, 197, 903
NlaIII CATG 4 cut(s) 26, 131, 277, 551
NlaIV GGNNCC 2 cut(s) 110, 222
NmuCI GTSAC 4 cut(s) 351, 469, 733, 1030
NspV TTCGAA 1 cut(s) 643
PagI TCATGA 1 cut(s) 547
PctI GAATGC 1 cut(s) 639
PdmI GAANNNNTTC 2 cut(s) 629, 649
PfeI GAWTC 3 cut(s) 175, 650, 686
PinAI ACCGGT 1 cut(s) 286
PkrI GCNGC 3 cut(s) 208, 565, 568
PleI GAGTC 4 cut(s) 358, 382, 552, 750
PpsI GAGTC 4 cut(s) 358, 382, 552, 750
PpuMI RGGWCCY 2 cut(s) 220, 782
PshAI GACNNNNGTC 1 cut(s) 137
Psp5II RGGWCCY 2 cut(s) 220, 782
Psp6I CCWGG 2 cut(s) 421, 778
PspGI CCWGG 2 cut(s) 421, 778
PspN4I GGNNCC 2 cut(s) 110, 222
PspPI GGNCC 5 cut(s) 120, 139, 220, 284, 782
PspPPI RGGWCCY 2 cut(s) 220, 782
PstI CTGCAG 1 cut(s) 571
PstNI CAGNNNCTG 2 cut(s) 345, 785
PvuII CAGCTG 2 cut(s) 566, 901
SaqAI TTAA 1 cut(s) 360
SatI GCNGC 3 cut(s) 207, 564, 567
Sau3AI GATC 3 cut(s) 46, 197, 903
Sau96I GGNCC 5 cut(s) 120, 139, 220, 284, 782
SchI GAGTC 4 cut(s) 359, 383, 553, 751
ScrFI CCNGG 3 cut(s) 423, 780, 820
SetI ASST 9 cut(s) 137, 162, 427, 568, 622, 735, 784, 903, 955
SfaNI GCATC 3 cut(s) 14, 529, 1027
SfcI CTRYAG 1 cut(s) 567
SfuI TTCGAA 1 cut(s) 643
SinI GGWCC 5 cut(s) 120, 139, 220, 284, 782
SmlI CTYRAG 1 cut(s) 13
SmoI CTYRAG 1 cut(s) 13
Sse9I AATT 6 cut(s) 102, 179, 520, 626, 971, 1050
SsiI CCGC 2 cut(s) 605, 859
SspMI CTAG 3 cut(s) 806, 947, 1081
StyD4I CCNGG 3 cut(s) 421, 778, 818
StyI CCWWGG 2 cut(s) 135, 210
TaqI TCGA 5 cut(s) 115, 193, 200, 432, 643
TasI AATT 6 cut(s) 102, 179, 520, 626, 971, 1050
TfiI GAWTC 3 cut(s) 175, 650, 686
Tru1I TTAA 1 cut(s) 360
Tru9I TTAA 1 cut(s) 360
TscAI CASTG 6 cut(s) 88, 299, 504, 516, 898, 1021
TseFI GTSAC 4 cut(s) 351, 469, 733, 1030
TseI GCWGC 3 cut(s) 206, 563, 566
Tsp45I GTSAC 4 cut(s) 351, 469, 733, 1030
TspDTI ATGAA 2 cut(s) 39, 564
TspGWI ACGGA 1 cut(s) 30
TspRI CASTG 6 cut(s) 88, 299, 504, 516, 898, 1021
VpaK11BI GGWCC 5 cut(s) 120, 139, 220, 284, 782
XagI CCTNNNNNAGG 2 cut(s) 146, 789
XapI RAATTY 2 cut(s) 520, 626
XmiI GTMKAC 2 cut(s) 444, 773
XmnI GAANNNNTTC 2 cut(s) 629, 649
XspI CTAG 3 cut(s) 806, 947, 1081
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.