Prupe.5G142400_v2.0.a1
MYB Family

Myb/SANT-like DNA-binding domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp05
OG0016332
Physical Location & Seq
Forward (+)
13203538 .. 13205274
1737 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.5G142400.1

Sequence Viewer

Length: 1017 bp
ATGGCATTAGACTCAATCAAACATGAAGGTGCTAGCTCTACTACATCTGACCAGGTTGACAGACAGCAGGTGCCGAATGGGAGCAGTGACGACAGGGCCAAACGACACCCTCGATGGACCAGGCACGAGACGTTTGTCCTCATAGAGGGCAAGAAGGTCGTGGAGAATGCGGTTCAGAAGGGCCGCAGCAGATCTTCTTCAGCCTTGGGGTCCGACCATTTTGAACCAAAGTGGGATCTGGTCTCATCATACTGTAAGCAGCGAGGTGTGAGCAGAGAGCCAGTTCAGTGCAGGAAAAGATGGAGCAATCTTCTTGTTGATTTCAAGAAAATCAGGAACTGGGAGTCACAGATAAAAGGAGCGGCTGAGTCTTTTTGGGTGATGAGAAATGATGTGAGGAAGGAGAGGAAGCTTCCCGGTTTCTTCGATCGGGAAGTTTACAACATCTTGGATGGAAATGCTGTGACTGCAACAGCAGCATGTCCACTGGCATTGTTTATCCCAGTACAAACAGATGCACAGAGTGGTGATGGGGCAGAAGCGGCAGCTGCAGAAGAAGAAGAGGAGGAGGAACCTGGAAAAGCTGCCAATGGCCTTCAACAGGATATGGCAGAAGATGGTTTATGTTCAGATTCTGAGGAGTCAGAGCAAGAGGAGACAGAGTCCAAGAAGGAAAACCTGATGCAAGACAGTCCGGCAACAACAGTCACAACTCCAATGCCTTCTTCAGGCACAATAAAAGAGAAACGGGGTTTAGACTCAAATGCATGTGGAGAGCATATCTCTCAGGAGAAACGGAAGCAGAGACGGTTGGCAATAGACGGATGTGAAAACAACTACAGTGACCAGTTGATCAGAGTACTTGAGAGGAACAACGCCCTGCTGAATGCCCAACTTGAAGCTCGTAACATAAATTGCCACTTGGATAGGGAACAGAGGAAGGAGCAAAGTAACAGCTTACTTGCTGCCATCAGCAAGGTCACAGATGCTCTAGTGAGAATCGCAGATAAATTATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-bind_4

Protein Analysis

339

Amino Acids

37.8

Weight (kDa)

5.51

Isoelectric Point (pI)

60.96

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016332)

Species Orthologous Gene IDs
fragaria_vesca FvH4_5g09440
malus_domestica MD06G1131400.v1.1 MD14G1147800.v1.1
prunus_persica Prupe.5G142400_v2.0.a1
pyrus_communis pycom06g12280
rosa_chinensis RchiOBHm_Chr7g0188751
rosa_laevigata RLG00000004664
rosa_multiflora Rmu_sc0042908.1_g000001
rosa_roxburghii Rroxscaffold_3G00266070
rosa_rugosa Rorug06G0493700
rosa_samantha Rh7AG098200 Rh7BG099700 Rh7CG101400 Rh7DG100000
rosa_wichuraiana Rw7G008460

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 58
Acc36I ACCTGC 1 cut(s) 58
AccB1I GGYRCC 1 cut(s) 70
AccBSI CCGCTC 1 cut(s) 362
AciI CCGC 4 cut(s) 170, 184, 362, 542
AclWI GGATC 1 cut(s) 243
AcuI CTGAAG 2 cut(s) 183, 711
AdeI CACNNNGTG 1 cut(s) 524
AfaI GTAC 2 cut(s) 507, 861
AfiI CCNNNNNNNGG 3 cut(s) 145, 601, 728
AgsI TTSAA 4 cut(s) 224, 325, 599, 899
AjnI CCWGG 3 cut(s) 51, 119, 574
AjuI GAANNNNNNNTTGG 2 cut(s) 709, 741
AluBI AGCT 6 cut(s) 36, 412, 548, 584, 902, 957
AluI AGCT 6 cut(s) 36, 412, 548, 584, 902, 957
Alw26I GTCTC 4 cut(s) 122, 247, 650, 799
AlwI GGATC 1 cut(s) 243
AlwNI CAGNNNCTG 2 cut(s) 339, 635
AoxI GGCC 3 cut(s) 96, 181, 592
ApeKI GCWGC 7 cut(s) 186, 259, 476, 545, 548, 584, 965
AspS9I GGNCC 4 cut(s) 96, 117, 181, 210
AsuC2I CCSGG 1 cut(s) 417
AsuHPI GGTGA 2 cut(s) 391, 539
AsuNHI GCTAGC 1 cut(s) 32
AvaII GGWCC 2 cut(s) 117, 210
BanI GGYRCC 1 cut(s) 70
BauI CACGAG 1 cut(s) 125
BbvI GCAGC 7 cut(s) 198, 271, 488, 535, 557, 571, 952
BccI CCATC 6 cut(s) 108, 294, 446, 524, 611, 977
BcgI CGANNNNNNTGC 2 cut(s) 139, 173
BciT130I CCWGG 3 cut(s) 53, 121, 576
BclI TGATCA 1 cut(s) 852
BcnI CCSGG 1 cut(s) 417
BcoDI GTCTC 4 cut(s) 122, 247, 650, 799
BfaI CTAG 2 cut(s) 33, 992
BfmI CTRYAG 2 cut(s) 549, 838
BfuAI ACCTGC 1 cut(s) 58
BglII AGATCT 1 cut(s) 191
BmcAI AGTACT 1 cut(s) 861
Bme1390I CCNGG 4 cut(s) 53, 121, 417, 576
Bme18I GGWCC 2 cut(s) 117, 210
BmgT120I GGNCC 4 cut(s) 96, 117, 181, 210
BmiI GGNNCC 3 cut(s) 72, 211, 573
BmrFI CCNGG 4 cut(s) 53, 121, 417, 576
BmrI ACTGGG 2 cut(s) 349, 497
BmsI GCATC 3 cut(s) 505, 672, 976
BmtI GCTAGC 1 cut(s) 36
BmuI ACTGGG 2 cut(s) 349, 497
BoxI GACNNNNGTC 1 cut(s) 134
BplI GAGNNNNNCTC 2 cut(s) 767, 799
BpuEI CTTGAG 1 cut(s) 884
BpuMI CCSGG 1 cut(s) 417
BsaI GGTCTC 1 cut(s) 247
BsaJI CCNNGG 1 cut(s) 204
BsaXI ACNNNNNCTCC 2 cut(s) 647, 677
Bsc4I CCNNNNNNNGG 3 cut(s) 145, 601, 728
Bse1I ACTGG 5 cut(s) 281, 344, 492, 503, 847
BseBI CCWGG 3 cut(s) 53, 121, 576
BseDI CCNNGG 1 cut(s) 204
BseGI GGATG 2 cut(s) 457, 830
BseLI CCNNNNNNNGG 3 cut(s) 145, 601, 728
BseMII CTCAG 3 cut(s) 357, 627, 800
BseNI ACTGG 5 cut(s) 281, 344, 492, 503, 847
BseRI GAGGAG 4 cut(s) 578, 581, 653, 668
BseXI GCAGC 7 cut(s) 198, 271, 488, 535, 557, 571, 952
BsgI GTGCAG 1 cut(s) 310
Bsh1285I CGRYCG 1 cut(s) 430
BshFI GGCC 3 cut(s) 98, 183, 594
BshNI GGYRCC 1 cut(s) 70
BsiEI CGRYCG 1 cut(s) 430
BsiSI CCGG 2 cut(s) 417, 695
BslI CCNNNNNNNGG 3 cut(s) 145, 601, 728
BsmAI GTCTC 4 cut(s) 122, 247, 650, 799
BsmBI CGTCTC 2 cut(s) 122, 799
BsmI GAATGC 2 cut(s) 172, 892
BsnI GGCC 3 cut(s) 98, 183, 594
Bso31I GGTCTC 1 cut(s) 247
Bsp143I GATC 4 cut(s) 191, 235, 427, 852
BspACI CCGC 4 cut(s) 170, 184, 362, 542
BspANI GGCC 3 cut(s) 98, 183, 594
BspCNI CTCAG 3 cut(s) 358, 628, 799
BspLI GGNNCC 3 cut(s) 72, 211, 573
BspMAI CTGCAG 1 cut(s) 553
BspMI ACCTGC 1 cut(s) 58
BspOI GCTAGC 1 cut(s) 36
BspPI GGATC 1 cut(s) 243
BspT107I GGYRCC 1 cut(s) 70
BspTNI GGTCTC 1 cut(s) 247
BsrBI CCGCTC 1 cut(s) 362
BsrI ACTGG 5 cut(s) 281, 344, 492, 503, 847
BssECI CCNNGG 1 cut(s) 204
BssMI GATC 4 cut(s) 191, 235, 427, 852
BssSI CACGAG 1 cut(s) 125
BssT1I CCWWGG 1 cut(s) 204
Bst2BI CACGAG 1 cut(s) 125
Bst2UI CCWGG 3 cut(s) 53, 121, 576
Bst4CI ACNGT 5 cut(s) 254, 692, 706, 810, 842
Bst6I CTCTTC 1 cut(s) 555
BstC8I GCNNGC 1 cut(s) 34
BstDEI CTNAG 3 cut(s) 366, 636, 786
BstENI CCTNNNNNAGG 3 cut(s) 143, 599, 726
BstF5I GGATG 2 cut(s) 457, 830
BstKTI GATC 4 cut(s) 194, 238, 430, 855
BstMAI GTCTC 4 cut(s) 122, 247, 650, 799
BstMBI GATC 4 cut(s) 191, 235, 427, 852
BstMCI CGRYCG 1 cut(s) 430
BstMWI GCNNNNNNNGC 4 cut(s) 467, 476, 542, 548
BstNI CCWGG 3 cut(s) 53, 121, 576
BstNSI RCATGY 2 cut(s) 483, 771
BstPAI GACNNNNGTC 1 cut(s) 134
BstSCI CCNGG 4 cut(s) 51, 119, 415, 574
BstSFI CTRYAG 2 cut(s) 549, 838
BstV1I GCAGC 7 cut(s) 198, 271, 488, 535, 557, 571, 952
BstX2I RGATCY 2 cut(s) 191, 235
BstYI RGATCY 2 cut(s) 191, 235
BsuRI GGCC 3 cut(s) 98, 183, 594
BtsCI GGATG 2 cut(s) 457, 830
BtsI GCAGTG 1 cut(s) 91
BtsIMutI CAGTG 4 cut(s) 91, 293, 485, 847
BveI ACCTGC 1 cut(s) 58
Cac8I GCNNGC 1 cut(s) 34
CaiI CAGNNNCTG 2 cut(s) 339, 635
Cfr13I GGNCC 4 cut(s) 96, 117, 181, 210
CsiI ACCWGGT 1 cut(s) 51
Csp6I GTAC 2 cut(s) 506, 860
CspCI CAANNNNNGTGG 2 cut(s) 474, 509
CviAII CATG 3 cut(s) 23, 480, 768
CviQI GTAC 2 cut(s) 506, 860
DdeI CTNAG 3 cut(s) 366, 636, 786
DpnI GATC 4 cut(s) 193, 237, 429, 854
DpnII GATC 4 cut(s) 191, 235, 427, 852
DraIII CACNNNGTG 1 cut(s) 524
Eam1104I CTCTTC 1 cut(s) 555
EarI CTCTTC 1 cut(s) 555
Eco130I CCWWGG 1 cut(s) 204
Eco31I GGTCTC 1 cut(s) 247
Eco47I GGWCC 2 cut(s) 117, 210
Eco57I CTGAAG 2 cut(s) 183, 711
EcoNI CCTNNNNNAGG 3 cut(s) 143, 599, 726
EcoRII CCWGG 3 cut(s) 51, 119, 574
EcoT14I CCWWGG 1 cut(s) 204
EcoT22I ATGCAT 1 cut(s) 769
ErhI CCWWGG 1 cut(s) 204
Esp3I CGTCTC 2 cut(s) 122, 799
FaeI CATG 3 cut(s) 26, 483, 771
FatI CATG 3 cut(s) 22, 479, 767
FbaI TGATCA 1 cut(s) 852
FokI GGATG 2 cut(s) 464, 837
FspBI CTAG 2 cut(s) 33, 992
HaeIII GGCC 3 cut(s) 98, 183, 594
HapII CCGG 2 cut(s) 417, 695
Hin1II CATG 3 cut(s) 26, 483, 771
HincII GTYRAC 1 cut(s) 58
HindII GTYRAC 1 cut(s) 58
HindIII AAGCTT 1 cut(s) 410
HinfI GANTC 8 cut(s) 11, 344, 368, 632, 641, 662, 758, 999
HpaII CCGG 2 cut(s) 417, 695
HphI GGTGA 2 cut(s) 391, 539
Hpy166II GTNNAC 3 cut(s) 58, 439, 485
Hpy188I TCNGA 7 cut(s) 49, 177, 214, 631, 637, 646, 857
Hpy188III TCNNGA 4 cut(s) 325, 334, 431, 788
Hpy8I GTNNAC 3 cut(s) 58, 439, 485
HpyAV CCTTC 8 cut(s) 20, 148, 172, 394, 605, 664, 732, 934
HpyCH4III ACNGT 5 cut(s) 254, 692, 706, 810, 842
HpyCH4IV ACGT 1 cut(s) 131
HpyCH4V TGCA 6 cut(s) 291, 470, 518, 551, 685, 767
HpyF10VI GCNNNNNNNGC 4 cut(s) 467, 476, 542, 548
HpyF3I CTNAG 3 cut(s) 366, 636, 786
HpySE526I ACGT 1 cut(s) 131
Hsp92II CATG 3 cut(s) 26, 483, 771
Ksp22I TGATCA 1 cut(s) 852
Kzo9I GATC 4 cut(s) 191, 235, 427, 852
LmnI GCTCC 4 cut(s) 81, 303, 359, 943
Lsp1109I GCAGC 7 cut(s) 198, 271, 488, 535, 557, 571, 952
LweI GCATC 3 cut(s) 505, 672, 976
MabI ACCWGGT 1 cut(s) 51
MaeI CTAG 2 cut(s) 33, 992
MaeII ACGT 1 cut(s) 131
MaeIII GTNAC 8 cut(s) 86, 345, 463, 706, 842, 905, 950, 979
MalI GATC 4 cut(s) 193, 237, 429, 854
MbiI CCGCTC 1 cut(s) 362
MboI GATC 4 cut(s) 191, 235, 427, 852
MboII GAAGA 9 cut(s) 186, 189, 302, 415, 566, 569, 572, 626, 717
MflI RGATCY 2 cut(s) 191, 235
MluCI AATT 2 cut(s) 913, 1010
MlyI GAGTC 6 cut(s) 5, 353, 377, 650, 671, 752
MmeI TCCRAC 1 cut(s) 237
Mph1103I ATGCAT 1 cut(s) 769
MslI CAYNNNNRTG 1 cut(s) 27
MspA1I CMGCKG 1 cut(s) 548
MspI CCGG 2 cut(s) 417, 695
MspR9I CCNGG 4 cut(s) 53, 121, 417, 576
Mva1269I GAATGC 2 cut(s) 172, 892
MvaI CCWGG 3 cut(s) 53, 121, 576
MwoI GCNNNNNNNGC 4 cut(s) 467, 476, 542, 548
NciI CCSGG 1 cut(s) 417
NdeII GATC 4 cut(s) 191, 235, 427, 852
NheI GCTAGC 1 cut(s) 32
NlaIII CATG 3 cut(s) 26, 483, 771
NlaIV GGNNCC 3 cut(s) 72, 211, 573
NmuCI GTSAC 6 cut(s) 86, 345, 463, 706, 842, 979
NsiI ATGCAT 1 cut(s) 769
NspI RCATGY 2 cut(s) 483, 771
PaqCI CACCTGC 1 cut(s) 58
PcsI WCGNNNNNNNCGW 1 cut(s) 109
PctI GAATGC 2 cut(s) 172, 892
PfeI GAWTC 2 cut(s) 632, 999
PflFI GACNNNGTC 1 cut(s) 661
Ple19I CGATCG 1 cut(s) 430
PleI GAGTC 6 cut(s) 5, 352, 376, 649, 670, 752
PpsI GAGTC 6 cut(s) 5, 352, 376, 649, 670, 752
PshAI GACNNNNGTC 1 cut(s) 134
Psp6I CCWGG 3 cut(s) 51, 119, 574
PspGI CCWGG 3 cut(s) 51, 119, 574
PspN4I GGNNCC 3 cut(s) 72, 211, 573
PspPI GGNCC 4 cut(s) 96, 117, 181, 210
PstI CTGCAG 1 cut(s) 553
PstNI CAGNNNCTG 2 cut(s) 339, 635
PsuI RGATCY 2 cut(s) 191, 235
PsyI GACNNNGTC 1 cut(s) 661
PvuI CGATCG 1 cut(s) 430
PvuII CAGCTG 1 cut(s) 548
RsaI GTAC 2 cut(s) 507, 861
RsaNI GTAC 2 cut(s) 506, 860
RseI CAYNNNNRTG 1 cut(s) 27
Sau3AI GATC 4 cut(s) 191, 235, 427, 852
Sau96I GGNCC 4 cut(s) 96, 117, 181, 210
ScaI AGTACT 1 cut(s) 861
SchI GAGTC 6 cut(s) 5, 353, 377, 650, 671, 752
ScrFI CCNGG 4 cut(s) 53, 121, 417, 576
SexAI ACCWGGT 1 cut(s) 51
SfaNI GCATC 3 cut(s) 505, 672, 976
SfcI CTRYAG 2 cut(s) 549, 838
SinI GGWCC 2 cut(s) 117, 210
SmiMI CAYNNNNRTG 1 cut(s) 27
SmlI CTYRAG 1 cut(s) 863
SmoI CTYRAG 1 cut(s) 863
Sse9I AATT 2 cut(s) 913, 1010
SsiI CCGC 4 cut(s) 170, 184, 362, 542
SspMI CTAG 2 cut(s) 33, 992
StyD4I CCNGG 4 cut(s) 51, 119, 415, 574
StyI CCWWGG 1 cut(s) 204
TaaI ACNGT 5 cut(s) 254, 692, 706, 810, 842
TaiI ACGT 1 cut(s) 134
TaqI TCGA 2 cut(s) 112, 426
TasI AATT 2 cut(s) 913, 1010
TatI WGTACW 2 cut(s) 505, 859
TauI GCSGC 3 cut(s) 186, 365, 545
TfiI GAWTC 2 cut(s) 632, 999
TscAI CASTG 4 cut(s) 91, 293, 492, 847
TseFI GTSAC 6 cut(s) 86, 345, 463, 706, 842, 979
TseI GCWGC 7 cut(s) 186, 259, 476, 545, 548, 584, 965
Tsp45I GTSAC 6 cut(s) 86, 345, 463, 706, 842, 979
TspDTI ATGAA 1 cut(s) 39
TspGWI ACGGA 2 cut(s) 811, 837
TspRI CASTG 4 cut(s) 91, 293, 492, 847
Tth111I GACNNNGTC 1 cut(s) 661
VpaK11BI GGWCC 2 cut(s) 117, 210
XagI CCTNNNNNAGG 3 cut(s) 143, 599, 726
XceI RCATGY 2 cut(s) 483, 771
XspI CTAG 2 cut(s) 33, 992
ZrmI AGTACT 1 cut(s) 861
Zsp2I ATGCAT 1 cut(s) 769
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.