MD06G1131400.v1.1
MYB Family

Myb/SANT-like DNA-binding domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr06
OG0016332
Physical Location & Seq
Forward (+)
27524532 .. 27525748
1217 bp
Loading structure...
UTR
Exon/CDS
Intron
MD06G1131400.v1.1.491

Sequence Viewer

Length: 1026 bp
ATGGCATTGGAGTCTATGAATCATGAAGCTGCCAGTCCTAGACCTGACCAAGCTGGCAAGCAGCAAACGCCGAACGGGAGCAGCGAAGACAAAACGAAGATCACGAGGCATCCTCGATGGACCAGACACGAGACCTTTGTCCTTATAGAGGGCAAGAGGGTCGTGGAGAATGCGGTCCAGAGGGGGCGGCGATCTACTTCAGCATTGGGGGCAGAAAATTTCGAACCCAAGTGGGATTTGGTCTCATCTTACTGCAGGCAGCGCGGCATGAGCAGATTGCCTGTTCAGTGCAGGAAAAGATGGAGCAATCTGCTTGTGGATTTTAAGAAAATCAGGAACTGGGAGGCACAGATAGAGCGAGAGGCTGAGTCTTTTTGGGTGATGAGGAATGATGTGAGGAGGGAGAGGAGGCTGCCTGGGTTCTTTGATCGGGAGGTTTACAATGTGTTGGATGGAAAGGAAGTGACTGCAACGGAAGCCTGTCCACTGGCATTGTTTATGCCGGGGCAAACAGATGCGATGGATGGTGATGGAACAGAGGAGGCGGCTGCAGAGGAAGAGGAGGAGGAAGGACCTGAGAAAGATTTACATGGTGGTCGAGATGATATGGCAGAAGATGGATTATGTTCAGATTTTGAAGAGTCTGGGCAAGACAAGACAGCCAAGAAATCGAAGAACAAAAACATTATGCAAGACAGTCCAACAAAAACAGTCACAACTCCAATGCCTAATTCAGGTGCGGTAAAGGAGAAACGAAGTCTAGGCTCAAAGACTTCCGGAGAAAATATTTATCAGGAGAAATGGAAGCAGAGGCGGGTGTCGACAGATGAAAGCGAACACAGCAACAACATCGACCAGCTGGTCAAAGTTCTGGAAAGGAGCAGCAACATGCTGAGTGCGCAACTTGAAGCTCATAACATAAATTGCCATTTGGAAAGGGAACAAAGGAAGGAGCAAAACAACAGCATACTCGCTGCTCTCGGCAAGGTCACAGATGTTCTAGCAAGAATTGCTGACAAACTATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-bind_4

Protein Analysis

342

Amino Acids

38.75

Weight (kDa)

5.94

Isoelectric Point (pI)

61.47

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-bind_4 PF13837 38 - 128 3.1e-10 Myb/SANT-like DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016332)

Species Orthologous Gene IDs
fragaria_vesca FvH4_5g09440
malus_domestica MD06G1131400.v1.1 MD14G1147800.v1.1
prunus_persica Prupe.5G142400_v2.0.a1
pyrus_communis pycom06g12280
rosa_chinensis RchiOBHm_Chr7g0188751
rosa_laevigata RLG00000004664
rosa_multiflora Rmu_sc0042908.1_g000001
rosa_roxburghii Rroxscaffold_3G00266070
rosa_rugosa Rorug06G0493700
rosa_samantha Rh7AG098200 Rh7BG099700 Rh7CG101400 Rh7DG100000
rosa_wichuraiana Rw7G008460

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 860
Acc16I TGCGCA 1 cut(s) 900
AccI GTMKAC 1 cut(s) 821
AccII CGCG 1 cut(s) 264
AccIII TCCGGA 1 cut(s) 776
AciI CCGC 6 cut(s) 173, 187, 264, 545, 740, 814
AcsI RAATTY 1 cut(s) 217
AcuI CTGAAG 1 cut(s) 183
AfiI CCNNNNNNNGG 2 cut(s) 148, 734
AgsI TTSAA 2 cut(s) 638, 908
AjnI CCWGG 1 cut(s) 415
AjuI GAANNNNNNNTTGG 2 cut(s) 715, 747
AluBI AGCT 4 cut(s) 29, 53, 859, 911
AluI AGCT 4 cut(s) 29, 53, 859, 911
Alw26I GTCTC 2 cut(s) 125, 247
AlwNI CAGNNNCTG 1 cut(s) 339
Aor13HI TCCGGA 1 cut(s) 776
ApeKI GCWGC 8 cut(s) 29, 61, 81, 259, 412, 548, 882, 974
ApoI RAATTY 1 cut(s) 217
AspLEI GCGC 2 cut(s) 264, 901
AspS9I GGNCC 3 cut(s) 120, 175, 572
AsuC2I CCSGG 1 cut(s) 504
AsuHPI GGTGA 2 cut(s) 391, 539
AsuII TTCGAA 1 cut(s) 222
AvaII GGWCC 3 cut(s) 120, 175, 572
BauI CACGAG 2 cut(s) 103, 128
BbsI GAAGAC 1 cut(s) 93
BbvI GCAGC 8 cut(s) 16, 73, 93, 271, 399, 535, 894, 961
BccI CCATC 7 cut(s) 111, 294, 446, 514, 518, 524, 611
BcgI CGANNNNNNTGC 4 cut(s) 142, 176, 832, 866
BciT130I CCWGG 1 cut(s) 417
BcnI CCSGG 1 cut(s) 504
BcoDI GTCTC 2 cut(s) 125, 247
BfaI CTAG 3 cut(s) 39, 761, 1001
BfmI CTRYAG 2 cut(s) 253, 549
Bme1390I CCNGG 2 cut(s) 417, 504
Bme18I GGWCC 3 cut(s) 120, 175, 572
BmgT120I GGNCC 3 cut(s) 120, 175, 572
BmrFI CCNGG 2 cut(s) 417, 504
BmrI ACTGGG 1 cut(s) 349
BmsI GCATC 2 cut(s) 118, 505
BmuI ACTGGG 1 cut(s) 349
BoxI GACNNNNGTC 1 cut(s) 137
BpiI GAAGAC 1 cut(s) 93
BplI GAGNNNNNCTC 2 cut(s) 97, 129
Bpu14I TTCGAA 1 cut(s) 222
BpuMI CCSGG 1 cut(s) 504
BsaI GGTCTC 2 cut(s) 125, 247
BsaJI CCNNGG 2 cut(s) 416, 503
BsaWI WCCGGW 1 cut(s) 776
Bsc4I CCNNNNNNNGG 2 cut(s) 148, 734
Bse1I ACTGG 3 cut(s) 33, 344, 492
BseAI TCCGGA 1 cut(s) 776
BseBI CCWGG 1 cut(s) 417
BseDI CCNNGG 2 cut(s) 416, 503
BseGI GGATG 3 cut(s) 109, 457, 529
BseLI CCNNNNNNNGG 2 cut(s) 148, 734
BseMII CTCAG 3 cut(s) 357, 567, 884
BseNI ACTGG 3 cut(s) 33, 344, 492
BseRI GAGGAG 5 cut(s) 412, 421, 554, 575, 578
BseXI GCAGC 8 cut(s) 16, 73, 93, 271, 399, 535, 894, 961
BsgI GTGCAG 1 cut(s) 310
Bsh1236I CGCG 1 cut(s) 264
BsiSI CCGG 2 cut(s) 503, 777
BslI CCNNNNNNNGG 2 cut(s) 148, 734
BsmAI GTCTC 2 cut(s) 125, 247
BsmI GAATGC 1 cut(s) 175
Bso31I GGTCTC 2 cut(s) 125, 247
Bsp119I TTCGAA 1 cut(s) 222
Bsp13I TCCGGA 1 cut(s) 776
Bsp143I GATC 3 cut(s) 99, 191, 427
BspACI CCGC 6 cut(s) 173, 187, 264, 545, 740, 814
BspCNI CTCAG 3 cut(s) 358, 568, 885
BspEI TCCGGA 1 cut(s) 776
BspFNI CGCG 1 cut(s) 264
BspHI TCATGA 1 cut(s) 22
BspMAI CTGCAG 2 cut(s) 257, 553
BspT104I TTCGAA 1 cut(s) 222
BspTNI GGTCTC 2 cut(s) 125, 247
BsrI ACTGG 3 cut(s) 33, 344, 492
BssECI CCNNGG 2 cut(s) 416, 503
BssMI GATC 3 cut(s) 99, 191, 427
BssSI CACGAG 2 cut(s) 103, 128
Bst2BI CACGAG 2 cut(s) 103, 128
Bst2UI CCWGG 1 cut(s) 417
Bst4CI ACNGT 2 cut(s) 698, 712
Bst6I CTCTTC 2 cut(s) 552, 633
BstAPI GCANNNNNTGC 1 cut(s) 1010
BstBI TTCGAA 1 cut(s) 222
BstC8I GCNNGC 3 cut(s) 55, 59, 257
BstDEI CTNAG 3 cut(s) 366, 576, 893
BstENI CCTNNNNNAGG 2 cut(s) 146, 732
BstF5I GGATG 3 cut(s) 109, 457, 529
BstFNI CGCG 1 cut(s) 264
BstHHI GCGC 2 cut(s) 264, 901
BstKTI GATC 3 cut(s) 102, 194, 430
BstMAI GTCTC 2 cut(s) 125, 247
BstMBI GATC 3 cut(s) 99, 191, 427
BstMWI GCNNNNNNNGC 8 cut(s) 67, 209, 261, 270, 476, 840, 898, 1010
BstNI CCWGG 1 cut(s) 417
BstNSI RCATGY 1 cut(s) 892
BstPAI GACNNNNGTC 1 cut(s) 137
BstSCI CCNGG 2 cut(s) 415, 502
BstSFI CTRYAG 2 cut(s) 253, 549
BstUI CGCG 1 cut(s) 264
BstV1I GCAGC 8 cut(s) 16, 73, 93, 271, 399, 535, 894, 961
BstV2I GAAGAC 1 cut(s) 93
BtgZI GCGATG 1 cut(s) 533
BtsCI GGATG 3 cut(s) 109, 457, 529
BtsIMutI CAGTG 2 cut(s) 293, 485
Cac8I GCNNGC 3 cut(s) 55, 59, 257
CaiI CAGNNNCTG 1 cut(s) 339
CciI TCATGA 1 cut(s) 22
CfoI GCGC 2 cut(s) 264, 901
Cfr13I GGNCC 3 cut(s) 120, 175, 572
CspCI CAANNNNNGTGG 2 cut(s) 474, 509
CviAII CATG 4 cut(s) 23, 268, 590, 889
DdeI CTNAG 3 cut(s) 366, 576, 893
DpnI GATC 3 cut(s) 101, 193, 429
DpnII GATC 3 cut(s) 99, 191, 427
DrdI GACNNNNNNGTC 1 cut(s) 860
DseDI GACNNNNNNGTC 1 cut(s) 860
Eam1104I CTCTTC 2 cut(s) 552, 633
EarI CTCTTC 2 cut(s) 552, 633
Eco31I GGTCTC 2 cut(s) 125, 247
Eco47I GGWCC 3 cut(s) 120, 175, 572
Eco57I CTGAAG 1 cut(s) 183
EcoNI CCTNNNNNAGG 2 cut(s) 146, 732
EcoO109I RGGNCCY 1 cut(s) 572
EcoRII CCWGG 1 cut(s) 415
FaeI CATG 4 cut(s) 26, 271, 593, 892
FatI CATG 4 cut(s) 22, 267, 589, 888
FauI CCCGC 1 cut(s) 807
FblI GTMKAC 1 cut(s) 821
FokI GGATG 3 cut(s) 96, 464, 536
FspBI CTAG 3 cut(s) 39, 761, 1001
FspI TGCGCA 1 cut(s) 900
GlaI GCGC 2 cut(s) 263, 900
HapII CCGG 2 cut(s) 503, 777
HhaI GCGC 2 cut(s) 264, 901
Hin1II CATG 4 cut(s) 26, 271, 593, 892
Hin6I GCGC 2 cut(s) 262, 899
HinP1I GCGC 2 cut(s) 262, 899
HincII GTYRAC 1 cut(s) 822
HindII GTYRAC 1 cut(s) 822
HinfI GANTC 4 cut(s) 11, 19, 368, 641
HpaII CCGG 2 cut(s) 503, 777
HphI GGTGA 2 cut(s) 391, 539
Hpy166II GTNNAC 3 cut(s) 439, 485, 822
Hpy188I TCNGA 1 cut(s) 631
Hpy188III TCNNGA 9 cut(s) 23, 103, 178, 334, 431, 599, 777, 794, 872
Hpy8I GTNNAC 3 cut(s) 439, 485, 822
HpyAV CCTTC 2 cut(s) 563, 943
HpyCH4III ACNGT 2 cut(s) 698, 712
HpyCH4V TGCA 5 cut(s) 255, 291, 470, 551, 691
HpyF10VI GCNNNNNNNGC 8 cut(s) 67, 209, 261, 270, 476, 840, 898, 1010
HpyF3I CTNAG 3 cut(s) 366, 576, 893
Hsp92II CATG 4 cut(s) 26, 271, 593, 892
HspAI GCGC 2 cut(s) 262, 899
Kpn2I TCCGGA 1 cut(s) 776
Kzo9I GATC 3 cut(s) 99, 191, 427
LmnI GCTCC 4 cut(s) 78, 303, 879, 952
Lsp1109I GCAGC 8 cut(s) 16, 73, 93, 271, 399, 535, 894, 961
LweI GCATC 2 cut(s) 118, 505
MaeI CTAG 3 cut(s) 39, 761, 1001
MaeIII GTNAC 3 cut(s) 463, 712, 988
MalI GATC 3 cut(s) 101, 193, 429
MboI GATC 3 cut(s) 99, 191, 427
MboII GAAGA 6 cut(s) 98, 109, 569, 626, 650, 685
MluCI AATT 4 cut(s) 217, 730, 922, 1008
MlyI GAGTC 3 cut(s) 20, 377, 650
MmeI TCCRAC 2 cut(s) 429, 725
MroI TCCGGA 1 cut(s) 776
MseI TTAA 1 cut(s) 324
MspA1I CMGCKG 1 cut(s) 859
MspI CCGG 2 cut(s) 503, 777
MspR9I CCNGG 2 cut(s) 417, 504
Mva1269I GAATGC 1 cut(s) 175
MvaI CCWGG 1 cut(s) 417
MvnI CGCG 1 cut(s) 264
MwoI GCNNNNNNNGC 8 cut(s) 67, 209, 261, 270, 476, 840, 898, 1010
NciI CCSGG 1 cut(s) 504
NdeII GATC 3 cut(s) 99, 191, 427
NlaIII CATG 4 cut(s) 26, 271, 593, 892
NmeAIII GCCGAG 1 cut(s) 960
NmuCI GTSAC 3 cut(s) 463, 712, 988
NsbI TGCGCA 1 cut(s) 900
NspI RCATGY 1 cut(s) 892
NspV TTCGAA 1 cut(s) 222
PagI TCATGA 1 cut(s) 22
PcsI WCGNNNNNNNCGW 2 cut(s) 81, 101
PctI GAATGC 1 cut(s) 175
PfeI GAWTC 1 cut(s) 19
PleI GAGTC 3 cut(s) 19, 376, 649
PpsI GAGTC 3 cut(s) 19, 376, 649
PpuMI RGGWCCY 1 cut(s) 572
PshAI GACNNNNGTC 1 cut(s) 137
Psp5II RGGWCCY 1 cut(s) 572
Psp6I CCWGG 1 cut(s) 415
PspGI CCWGG 1 cut(s) 415
PspPI GGNCC 3 cut(s) 120, 175, 572
PspPPI RGGWCCY 1 cut(s) 572
PstI CTGCAG 2 cut(s) 257, 553
PstNI CAGNNNCTG 1 cut(s) 339
PvuII CAGCTG 1 cut(s) 859
SalI GTCGAC 1 cut(s) 820
SaqAI TTAA 1 cut(s) 324
Sau3AI GATC 3 cut(s) 99, 191, 427
Sau96I GGNCC 3 cut(s) 120, 175, 572
SchI GAGTC 3 cut(s) 20, 377, 650
ScrFI CCNGG 2 cut(s) 417, 504
SfaNI GCATC 2 cut(s) 118, 505
SfcI CTRYAG 2 cut(s) 253, 549
SfuI TTCGAA 1 cut(s) 222
SinI GGWCC 3 cut(s) 120, 175, 572
Sse9I AATT 4 cut(s) 217, 730, 922, 1008
SsiI CCGC 6 cut(s) 173, 187, 264, 545, 740, 814
SspI AATATT 1 cut(s) 787
SspMI CTAG 3 cut(s) 39, 761, 1001
StyD4I CCNGG 2 cut(s) 415, 502
TaaI ACNGT 2 cut(s) 698, 712
TaqI TCGA 6 cut(s) 115, 222, 598, 671, 821, 852
TasI AATT 4 cut(s) 217, 730, 922, 1008
TauI GCSGC 3 cut(s) 190, 267, 548
TfiI GAWTC 1 cut(s) 19
Tru1I TTAA 1 cut(s) 324
Tru9I TTAA 1 cut(s) 324
TscAI CASTG 2 cut(s) 293, 492
TseFI GTSAC 3 cut(s) 463, 712, 988
TseI GCWGC 8 cut(s) 29, 61, 81, 259, 412, 548, 882, 974
Tsp45I GTSAC 3 cut(s) 463, 712, 988
TspDTI ATGAA 3 cut(s) 32, 39, 843
TspGWI ACGGA 1 cut(s) 488
TspRI CASTG 2 cut(s) 293, 492
VpaK11BI GGWCC 3 cut(s) 120, 175, 572
XagI CCTNNNNNAGG 2 cut(s) 146, 732
XapI RAATTY 1 cut(s) 217
XceI RCATGY 1 cut(s) 892
XcmI CCANNNNNNNNNTGG 1 cut(s) 235
XmiI GTMKAC 1 cut(s) 821
XspI CTAG 3 cut(s) 39, 761, 1001
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.