RchiOBHm_Chr7g0188751
MYB Family

Myb/SANT-like DNA-binding domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
7
OG0016332
Physical Location & Seq
Forward (+)
8140252 .. 8142131
1880 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ16856

Sequence Viewer

Length: 1059 bp
ATGGCATCAGACTCGAGCAAACACGAAGACGGTGGTTCTCCGTCCGACCAAGTTGAGAAATTGCAAGTGCCAAGTGGGAGCAGCCAAGAGAGAATGAAAACAATTAGGCACCCTCGATGGACCAGAAAAGAGACCTTAACCCTTATAGAGGGCAAGAAGGTTATAGAAAATGGGATTCAATTTCAAAAGGGTCGAAGATCAACTGCAGCCTTGGGGCCGGACCCTGTTGAACCCAAGTGGGATTTGGTATCATCGTTTTGCAAACAGCGTGGCGTAAGCAGAGGACCGGTACAGTGCAGGAAGAGATGGAGCAATCTTCTTGTTGATTTCAAGAAAATCAGGAACTGGGAGTCACAGATTAAGGGAGAGGCGGAGTCTTTTTGGGTGATGAGGAATGATTTGAGGAGAGACAAGAAACTTCCAGGTTTCTTCGATAGGGATGTTTACAATGTCTTGGATGGAAAAGATGCGACTGCAAAACCAGCATCTCCACTGGCAGTCCTATGCCCAATGCCGCTAAATTCAATACCTATGGAAGATGTGTGTCATGTGACTGAGGAGGCAGCTGCAGAAGAAGAGGAAGAAGAAGTGGAGGAGGAGGAACCTGAGAAATTTTTCAATAGCATTCGAAATGATTCAACAGAAAATGATCTGTTTTCAGATTTTGAGGAATCTGGGCAAGAGGAGACAACCATAAACTCCAAAAAGGAACAAAAGGTGACAGGGAGTCCAACAAAAATATTCACAACTCCTGTGCCTACTCCAGGTCCGGTAAAGGGGAAACGAGGGCTAGGGTCAGATACCGGGAGAGAGGAGAAACAGAAGCAGAGGCGGTTGTCAAGAGATGGATGTGAAGACAACTGCAGTGACCAGCTGATCAGAGTTCTTGAGAAAAATAGCAAAATGATGAATGCCCAACTTGAAGCTCATAACAAAAACTACCAATTGGATAGGGAGAAAAACAAGGAGCAAAACAACAACTTACTCGCTGCTATCAAAAATGTCACAGATGCTCTGGTAAGAATTGCAGACAAGTTGACTAGTCATTCTGGTGATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-bind_4

Protein Analysis

352

Amino Acids

39.83

Weight (kDa)

5.94

Isoelectric Point (pI)

55.66

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-bind_4 PF13837 38 - 130 5.8e-09 Myb/SANT-like DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016332)

Species Orthologous Gene IDs
fragaria_vesca FvH4_5g09440
malus_domestica MD06G1131400.v1.1 MD14G1147800.v1.1
prunus_persica Prupe.5G142400_v2.0.a1
pyrus_communis pycom06g12280
rosa_chinensis RchiOBHm_Chr7g0188751
rosa_laevigata RLG00000004664
rosa_multiflora Rmu_sc0042908.1_g000001
rosa_roxburghii Rroxscaffold_3G00266070
rosa_rugosa Rorug06G0493700
rosa_samantha Rh7AG098200 Rh7BG099700 Rh7CG101400 Rh7DG100000
rosa_wichuraiana Rw7G008460

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 108
AciI CCGC 3 cut(s) 371, 515, 832
AcsI RAATTY 2 cut(s) 520, 611
AfaI GTAC 1 cut(s) 291
AfiI CCNNNNNNNGG 3 cut(s) 148, 764, 776
AgeI ACCGGT 1 cut(s) 286
AgsI TTSAA 8 cut(s) 179, 185, 230, 331, 525, 619, 639, 923
AhdI GACNNNNNGTC 1 cut(s) 726
AhlI ACTAGT 1 cut(s) 1040
AjnI CCWGG 2 cut(s) 421, 763
AluBI AGCT 3 cut(s) 566, 874, 926
AluI AGCT 3 cut(s) 566, 874, 926
Alw26I GTCTC 3 cut(s) 125, 402, 680
AlwNI CAGNNNCTG 1 cut(s) 345
Ama87I CYCGRG 1 cut(s) 13
AoxI GGCC 1 cut(s) 215
ApeKI GCWGC 5 cut(s) 81, 206, 563, 566, 989
ApoI RAATTY 2 cut(s) 520, 611
AsiGI ACCGGT 1 cut(s) 286
Asp700I GAANNNNTTC 2 cut(s) 614, 634
AspS9I GGNCC 5 cut(s) 120, 215, 220, 284, 767
AsuC2I CCSGG 1 cut(s) 805
AsuHPI GGTGA 2 cut(s) 397, 730
AsuII TTCGAA 1 cut(s) 628
AvaI CYCGRG 1 cut(s) 13
AvaII GGWCC 4 cut(s) 120, 220, 284, 767
BanI GGYRCC 1 cut(s) 108
BbsI GAAGAC 2 cut(s) 33, 861
BbvI GCAGC 5 cut(s) 93, 218, 553, 575, 976
BccI CCATC 4 cut(s) 111, 300, 452, 839
BcgI CGANNNNNNTGC 1 cut(s) 28
BciT130I CCWGG 2 cut(s) 423, 765
BclI TGATCA 1 cut(s) 876
BcnI CCSGG 1 cut(s) 805
BcoDI GTCTC 3 cut(s) 125, 402, 680
BcuI ACTAGT 1 cut(s) 1040
BfaI CTAG 2 cut(s) 791, 1041
BfmI CTRYAG 3 cut(s) 204, 567, 862
BisI GCNGC 6 cut(s) 82, 207, 515, 564, 567, 990
BlsI GCNGC 6 cut(s) 83, 208, 516, 565, 568, 991
Bme1390I CCNGG 3 cut(s) 423, 765, 805
Bme18I GGWCC 4 cut(s) 120, 220, 284, 767
BmeRI GACNNNNNGTC 1 cut(s) 726
BmeT110I CYCGRG 1 cut(s) 13
BmgT120I GGNCC 5 cut(s) 120, 215, 220, 284, 767
BmiI GGNNCC 4 cut(s) 110, 216, 222, 603
BmrFI CCNGG 3 cut(s) 423, 765, 805
BmrI ACTGGG 1 cut(s) 355
BmsI GCATC 4 cut(s) 14, 457, 494, 1000
BmuI ACTGGG 1 cut(s) 355
BpiI GAAGAC 2 cut(s) 33, 861
BpmI CTGGAG 1 cut(s) 747
Bpu14I TTCGAA 1 cut(s) 628
BpuEI CTTGAG 1 cut(s) 908
BpuMI CCSGG 1 cut(s) 805
BsaI GGTCTC 1 cut(s) 125
BsaJI CCNNGG 1 cut(s) 210
BsaWI WCCGGW 2 cut(s) 286, 769
Bsc4I CCNNNNNNNGG 3 cut(s) 148, 764, 776
Bse118I RCCGGY 1 cut(s) 286
Bse1I ACTGG 2 cut(s) 350, 498
BseBI CCWGG 2 cut(s) 423, 765
BseDI CCNNGG 1 cut(s) 210
BseGI GGATG 3 cut(s) 445, 463, 854
BseLI CCNNNNNNNGG 3 cut(s) 148, 764, 776
BseMII CTCAG 2 cut(s) 546, 597
BseNI ACTGG 2 cut(s) 350, 498
BseRI GAGGAG 6 cut(s) 418, 572, 608, 611, 698, 827
BseXI GCAGC 5 cut(s) 93, 218, 553, 575, 976
BsgI GTGCAG 1 cut(s) 316
BshFI GGCC 1 cut(s) 217
BshNI GGYRCC 1 cut(s) 108
BshTI ACCGGT 1 cut(s) 286
BsiHKCI CYCGRG 1 cut(s) 13
BsiSI CCGG 4 cut(s) 218, 287, 770, 804
BslI CCNNNNNNNGG 3 cut(s) 148, 764, 776
BsmAI GTCTC 3 cut(s) 125, 402, 680
BsmI GAATGC 2 cut(s) 624, 916
BsnI GGCC 1 cut(s) 217
Bso31I GGTCTC 1 cut(s) 125
BsoBI CYCGRG 1 cut(s) 13
Bsp119I TTCGAA 1 cut(s) 628
Bsp143I GATC 3 cut(s) 197, 649, 876
BspACI CCGC 3 cut(s) 371, 515, 832
BspANI GGCC 1 cut(s) 217
BspCNI CTCAG 2 cut(s) 547, 598
BspLI GGNNCC 4 cut(s) 110, 216, 222, 603
BspMAI CTGCAG 3 cut(s) 208, 571, 866
BspT104I TTCGAA 1 cut(s) 628
BspT107I GGYRCC 1 cut(s) 108
BspTNI GGTCTC 1 cut(s) 125
BsrFI RCCGGY 1 cut(s) 286
BsrI ACTGG 2 cut(s) 350, 498
BssAI RCCGGY 1 cut(s) 286
BssECI CCNNGG 1 cut(s) 210
BssMI GATC 3 cut(s) 197, 649, 876
BssT1I CCWWGG 1 cut(s) 210
Bst2UI CCWGG 2 cut(s) 423, 765
Bst4CI ACNGT 2 cut(s) 32, 294
Bst6I CTCTTC 2 cut(s) 296, 570
BstBI TTCGAA 1 cut(s) 628
BstDEI CTNAG 2 cut(s) 555, 606
BstENI CCTNNNNNAGG 2 cut(s) 146, 762
BstF5I GGATG 3 cut(s) 445, 463, 854
BstKTI GATC 3 cut(s) 200, 652, 879
BstMAI GTCTC 3 cut(s) 125, 402, 680
BstMBI GATC 3 cut(s) 197, 649, 876
BstMWI GCNNNNNNNGC 1 cut(s) 482
BstNI CCWGG 2 cut(s) 423, 765
BstSCI CCNGG 3 cut(s) 421, 763, 803
BstSFI CTRYAG 3 cut(s) 204, 567, 862
BstV1I GCAGC 5 cut(s) 93, 218, 553, 575, 976
BstV2I GAAGAC 2 cut(s) 33, 861
BsuRI GGCC 1 cut(s) 217
BtsCI GGATG 3 cut(s) 445, 463, 854
BtsI GCAGTG 1 cut(s) 871
BtsIMutI CAGTG 3 cut(s) 299, 491, 871
CaiI CAGNNNCTG 1 cut(s) 345
Cfr10I RCCGGY 1 cut(s) 286
Cfr13I GGNCC 5 cut(s) 120, 215, 220, 284, 767
Csp6I GTAC 1 cut(s) 290
CspAI ACCGGT 1 cut(s) 286
CspCI CAANNNNNGTGG 2 cut(s) 250, 285
CviAII CATG 1 cut(s) 548
CviJI RGCY 7 cut(s) 84, 209, 217, 566, 790, 874, 926
CviKI_1 RGCY 7 cut(s) 84, 209, 217, 566, 790, 874, 926
CviQI GTAC 1 cut(s) 290
DdeI CTNAG 2 cut(s) 555, 606
DpnI GATC 3 cut(s) 199, 651, 878
DpnII GATC 3 cut(s) 197, 649, 876
DriI GACNNNNNGTC 1 cut(s) 726
Eam1104I CTCTTC 2 cut(s) 296, 570
Eam1105I GACNNNNNGTC 1 cut(s) 726
EarI CTCTTC 2 cut(s) 296, 570
EciI GGCGGA 1 cut(s) 386
Eco130I CCWWGG 1 cut(s) 210
Eco31I GGTCTC 1 cut(s) 125
Eco47I GGWCC 4 cut(s) 120, 220, 284, 767
Eco88I CYCGRG 1 cut(s) 13
EcoNI CCTNNNNNAGG 2 cut(s) 146, 762
EcoRII CCWGG 2 cut(s) 421, 763
EcoT14I CCWWGG 1 cut(s) 210
ErhI CCWWGG 1 cut(s) 210
FaeI CATG 1 cut(s) 551
FaiI YATR 7 cut(s) 146, 164, 505, 533, 549, 695, 930
FatI CATG 1 cut(s) 547
FbaI TGATCA 1 cut(s) 876
Fnu4HI GCNGC 6 cut(s) 82, 207, 515, 564, 567, 990
FokI GGATG 3 cut(s) 452, 470, 861
Fsp4HI GCNGC 6 cut(s) 82, 207, 515, 564, 567, 990
FspBI CTAG 2 cut(s) 791, 1041
GluI GCNGC 6 cut(s) 82, 207, 515, 564, 567, 990
GsuI CTGGAG 1 cut(s) 747
HaeIII GGCC 1 cut(s) 217
HapII CCGG 4 cut(s) 218, 287, 770, 804
Hin1II CATG 1 cut(s) 551
HincII GTYRAC 1 cut(s) 1038
HindII GTYRAC 1 cut(s) 1038
HinfI GANTC 7 cut(s) 11, 175, 350, 374, 635, 671, 727
HpaII CCGG 4 cut(s) 218, 287, 770, 804
HphI GGTGA 2 cut(s) 397, 730
Hpy166II GTNNAC 2 cut(s) 445, 1038
Hpy188I TCNGA 5 cut(s) 10, 46, 661, 799, 881
Hpy188III TCNNGA 4 cut(s) 331, 340, 840, 887
Hpy8I GTNNAC 2 cut(s) 445, 1038
HpyAV CCTTC 1 cut(s) 151
HpyCH4III ACNGT 2 cut(s) 32, 294
HpyCH4V TGCA 8 cut(s) 64, 206, 261, 297, 476, 569, 864, 1028
HpyF10VI GCNNNNNNNGC 1 cut(s) 482
HpyF3I CTNAG 2 cut(s) 555, 606
Hsp92II CATG 1 cut(s) 551
Ksp22I TGATCA 1 cut(s) 876
Kzo9I GATC 3 cut(s) 197, 649, 876
LmnI GCTCC 3 cut(s) 78, 309, 967
Lsp1109I GCAGC 5 cut(s) 93, 218, 553, 575, 976
LweI GCATC 4 cut(s) 14, 457, 494, 1000
MaeI CTAG 2 cut(s) 791, 1041
MaeIII GTNAC 5 cut(s) 351, 550, 718, 866, 1003
MalI GATC 3 cut(s) 199, 651, 878
MboI GATC 3 cut(s) 197, 649, 876
MfeI CAATTG 1 cut(s) 944
MluCI AATT 7 cut(s) 59, 102, 179, 520, 611, 944, 1023
MlyI GAGTC 4 cut(s) 5, 359, 383, 736
MmeI TCCRAC 2 cut(s) 69, 755
MroXI GAANNNNTTC 2 cut(s) 614, 634
MseI TTAA 3 cut(s) 137, 360, 1057
MslI CAYNNNNRTG 1 cut(s) 1050
MspA1I CMGCKG 2 cut(s) 566, 874
MspI CCGG 4 cut(s) 218, 287, 770, 804
MspR9I CCNGG 3 cut(s) 423, 765, 805
MunI CAATTG 1 cut(s) 944
Mva1269I GAATGC 2 cut(s) 624, 916
MvaI CCWGG 2 cut(s) 423, 765
MwoI GCNNNNNNNGC 1 cut(s) 482
NciI CCSGG 1 cut(s) 805
NdeII GATC 3 cut(s) 197, 649, 876
NlaIII CATG 1 cut(s) 551
NlaIV GGNNCC 4 cut(s) 110, 216, 222, 603
NmuCI GTSAC 5 cut(s) 351, 550, 718, 866, 1003
NspV TTCGAA 1 cut(s) 628
PaeR7I CTCGAG 1 cut(s) 13
PctI GAATGC 2 cut(s) 624, 916
PdmI GAANNNNTTC 2 cut(s) 614, 634
PfeI GAWTC 3 cut(s) 175, 635, 671
PinAI ACCGGT 1 cut(s) 286
PkrI GCNGC 6 cut(s) 83, 208, 516, 565, 568, 991
PleI GAGTC 4 cut(s) 5, 358, 382, 735
PpsI GAGTC 4 cut(s) 5, 358, 382, 735
Psp6I CCWGG 2 cut(s) 421, 763
PspGI CCWGG 2 cut(s) 421, 763
PspN4I GGNNCC 4 cut(s) 110, 216, 222, 603
PspPI GGNCC 5 cut(s) 120, 215, 220, 284, 767
PspXI VCTCGAGB 1 cut(s) 13
PstI CTGCAG 3 cut(s) 208, 571, 866
PstNI CAGNNNCTG 1 cut(s) 345
PvuII CAGCTG 2 cut(s) 566, 874
RsaI GTAC 1 cut(s) 291
RsaNI GTAC 1 cut(s) 290
RseI CAYNNNNRTG 1 cut(s) 1050
SaqAI TTAA 3 cut(s) 137, 360, 1057
SatI GCNGC 6 cut(s) 82, 207, 515, 564, 567, 990
Sau3AI GATC 3 cut(s) 197, 649, 876
Sau96I GGNCC 5 cut(s) 120, 215, 220, 284, 767
SchI GAGTC 4 cut(s) 5, 359, 383, 736
ScrFI CCNGG 3 cut(s) 423, 765, 805
SfaNI GCATC 4 cut(s) 14, 457, 494, 1000
SfcI CTRYAG 3 cut(s) 204, 567, 862
Sfr274I CTCGAG 1 cut(s) 13
SfuI TTCGAA 1 cut(s) 628
SinI GGWCC 4 cut(s) 120, 220, 284, 767
SlaI CTCGAG 1 cut(s) 13
SmiMI CAYNNNNRTG 1 cut(s) 1050
SmlI CTYRAG 2 cut(s) 13, 887
SmoI CTYRAG 2 cut(s) 13, 887
SpeI ACTAGT 1 cut(s) 1040
Sse9I AATT 7 cut(s) 59, 102, 179, 520, 611, 944, 1023
SsiI CCGC 3 cut(s) 371, 515, 832
SspI AATATT 1 cut(s) 741
SspMI CTAG 2 cut(s) 791, 1041
StyD4I CCNGG 3 cut(s) 421, 763, 803
StyI CCWWGG 1 cut(s) 210
TaaI ACNGT 2 cut(s) 32, 294
TaqI TCGA 5 cut(s) 14, 115, 193, 432, 628
TasI AATT 7 cut(s) 59, 102, 179, 520, 611, 944, 1023
TauI GCSGC 1 cut(s) 517
TfiI GAWTC 3 cut(s) 175, 635, 671
Tru1I TTAA 3 cut(s) 137, 360, 1057
Tru9I TTAA 3 cut(s) 137, 360, 1057
TscAI CASTG 3 cut(s) 299, 498, 871
TseFI GTSAC 5 cut(s) 351, 550, 718, 866, 1003
TseI GCWGC 5 cut(s) 81, 206, 563, 566, 989
Tsp45I GTSAC 5 cut(s) 351, 550, 718, 866, 1003
TspDTI ATGAA 2 cut(s) 110, 923
TspGWI ACGGA 1 cut(s) 30
TspRI CASTG 3 cut(s) 299, 498, 871
VpaK11BI GGWCC 4 cut(s) 120, 220, 284, 767
XagI CCTNNNNNAGG 2 cut(s) 146, 762
XapI RAATTY 2 cut(s) 520, 611
XcmI CCANNNNNNNNNTGG 1 cut(s) 241
XhoI CTCGAG 1 cut(s) 13
XmnI GAANNNNTTC 2 cut(s) 614, 634
XspI CTAG 2 cut(s) 791, 1041
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.