Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0042908.1

Orthogroup ID

OG0016332

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 269

Gene Structure 269 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0042908.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 269 bp

tagggtcagataccgggagagaggagaaacagaagcagaggcggttgtcaagagatggatgtgaagacaactgcagtgaccagctgatcagagttcttgagaaaaatagcaaaatgatgaatgcccaacttgaagctcataacaaaaactgccaattggatagggagcaaaacaaggagcaaaacaacaacttactcgctgctatcaaaaatgtcacagatgctctggtaagaattgcagacaagttgactagtcattctggtgattaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-bind_4

Protein Analysis

88

Amino Acids

9.98

Weight (kDa)

6.93

Isoelectric Point (pI)

34.85

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0016332)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g09440
malus_domestica	MD06G1131400.v1.1 MD14G1147800.v1.1
prunus_persica	Prupe.5G142400_v2.0.a1
pyrus_communis	pycom06g12280
rosa_chinensis	RchiOBHm_Chr7g0188751
rosa_laevigata	RLG00000004664
rosa_multiflora	Rmu_sc0042908.1_g000001
rosa_roxburghii	Rroxscaffold_3G00266070
rosa_rugosa	Rorug06G0493700
rosa_samantha	Rh7AG098200 Rh7BG099700 Rh7CG101400 Rh7DG100000
rosa_wichuraiana	Rw7G008460

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	42
AgsI	TTSAA	1 cut(s)	133
AhlI	ACTAGT	1 cut(s)	250
AluBI	AGCT	2 cut(s)	84, 136
AluI	AGCT	2 cut(s)	84, 136
ApeKI	GCWGC	1 cut(s)	199
AsuC2I	CCSGG	1 cut(s)	15
BbsI	GAAGAC	1 cut(s)	71
BbvI	GCAGC	1 cut(s)	186
BccI	CCATC	1 cut(s)	49
BclI	TGATCA	1 cut(s)	86
BcnI	CCSGG	1 cut(s)	15
BcuI	ACTAGT	1 cut(s)	250
BfaI	CTAG	1 cut(s)	251
BfmI	CTRYAG	1 cut(s)	72
BisI	GCNGC	1 cut(s)	200
BlsI	GCNGC	1 cut(s)	201
Bme1390I	CCNGG	1 cut(s)	15
BmrFI	CCNGG	1 cut(s)	15
BmsI	GCATC	1 cut(s)	210
BpiI	GAAGAC	1 cut(s)	71
BpuEI	CTTGAG	1 cut(s)	118
BpuMI	CCSGG	1 cut(s)	15
BseGI	GGATG	1 cut(s)	64
BseRI	GAGGAG	1 cut(s)	37
BseXI	GCAGC	1 cut(s)	186
BsiSI	CCGG	1 cut(s)	14
BsmI	GAATGC	1 cut(s)	126
Bsp143I	GATC	1 cut(s)	86
BspACI	CCGC	1 cut(s)	42
BspMAI	CTGCAG	1 cut(s)	76
BssMI	GATC	1 cut(s)	86
BstF5I	GGATG	1 cut(s)	64
BstKTI	GATC	1 cut(s)	89
BstMBI	GATC	1 cut(s)	86
BstSCI	CCNGG	1 cut(s)	13
BstSFI	CTRYAG	1 cut(s)	72
BstV1I	GCAGC	1 cut(s)	186
BstV2I	GAAGAC	1 cut(s)	71
BtsCI	GGATG	1 cut(s)	64
BtsI	GCAGTG	1 cut(s)	81
BtsIMutI	CAGTG	1 cut(s)	81
CviJI	RGCY	2 cut(s)	84, 136
CviKI_1	RGCY	2 cut(s)	84, 136
DpnI	GATC	1 cut(s)	88
DpnII	GATC	1 cut(s)	86
FaiI	YATR	1 cut(s)	140
FbaI	TGATCA	1 cut(s)	86
Fnu4HI	GCNGC	1 cut(s)	200
FokI	GGATG	1 cut(s)	71
Fsp4HI	GCNGC	1 cut(s)	200
FspBI	CTAG	1 cut(s)	251
GluI	GCNGC	1 cut(s)	200
HapII	CCGG	1 cut(s)	14
HincII	GTYRAC	1 cut(s)	248
HindII	GTYRAC	1 cut(s)	248
HpaII	CCGG	1 cut(s)	14
Hpy166II	GTNNAC	1 cut(s)	248
Hpy188I	TCNGA	2 cut(s)	9, 91
Hpy188III	TCNNGA	2 cut(s)	50, 97
Hpy8I	GTNNAC	1 cut(s)	248
HpyCH4V	TGCA	2 cut(s)	74, 238
Ksp22I	TGATCA	1 cut(s)	86
Kzo9I	GATC	1 cut(s)	86
LmnI	GCTCC	2 cut(s)	165, 177
LpnPI	CCDG	4 cut(s)	27, 94, 211, 245
Lsp1109I	GCAGC	1 cut(s)	186
LweI	GCATC	1 cut(s)	210
MaeI	CTAG	1 cut(s)	251
MaeIII	GTNAC	2 cut(s)	76, 213
MalI	GATC	1 cut(s)	88
MboI	GATC	1 cut(s)	86
MboII	GAAGA	1 cut(s)	76
MfeI	CAATTG	1 cut(s)	154
MluCI	AATT	2 cut(s)	154, 233
MnlI	CCTC	2 cut(s)	15, 32
MseI	TTAA	1 cut(s)	267
MslI	CAYNNNNRTG	1 cut(s)	260
MspA1I	CMGCKG	1 cut(s)	84
MspI	CCGG	1 cut(s)	14
MspR9I	CCNGG	1 cut(s)	15
MunI	CAATTG	1 cut(s)	154
Mva1269I	GAATGC	1 cut(s)	126
NciI	CCSGG	1 cut(s)	15
NdeII	GATC	1 cut(s)	86
NmuCI	GTSAC	2 cut(s)	76, 213
PctI	GAATGC	1 cut(s)	126
PkrI	GCNGC	1 cut(s)	201
PstI	CTGCAG	1 cut(s)	76
PvuII	CAGCTG	1 cut(s)	84
RseI	CAYNNNNRTG	1 cut(s)	260
SaqAI	TTAA	1 cut(s)	267
SatI	GCNGC	1 cut(s)	200
Sau3AI	GATC	1 cut(s)	86
ScrFI	CCNGG	1 cut(s)	15
SetI	ASST	2 cut(s)	86, 138
SfaNI	GCATC	1 cut(s)	210
SfcI	CTRYAG	1 cut(s)	72
SmiMI	CAYNNNNRTG	1 cut(s)	260
SmlI	CTYRAG	1 cut(s)	97
SmoI	CTYRAG	1 cut(s)	97
SpeI	ACTAGT	1 cut(s)	250
Sse9I	AATT	2 cut(s)	154, 233
SsiI	CCGC	1 cut(s)	42
SspMI	CTAG	1 cut(s)	251
StyD4I	CCNGG	1 cut(s)	13
TasI	AATT	2 cut(s)	154, 233
Tru1I	TTAA	1 cut(s)	267
Tru9I	TTAA	1 cut(s)	267
TscAI	CASTG	1 cut(s)	81
TseFI	GTSAC	2 cut(s)	76, 213
TseI	GCWGC	1 cut(s)	199
Tsp45I	GTSAC	2 cut(s)	76, 213
TspDTI	ATGAA	1 cut(s)	133
TspRI	CASTG	1 cut(s)	81
XspI	CTAG	1 cut(s)	251

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.