Rroxscaffold_3G00266070
MYB Family

Myb/SANT-like DNA-binding domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000003
OG0016332
Physical Location & Seq
Reverse (-)
59448039 .. 59449450
1412 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_3G00266070.1

Sequence Viewer

Length: 1080 bp
ATGGCATCGGACTCGAGCAAACATGAAGACAGTGGTTCTCCGTCCGACCAAGTTGAGAAATTGCAAGTGCCAAGTGGGAGCAGCCAAGAGAGAATGAAAACAATTAGGCACCCTCGATGGACCAGAAAAGAGACCTTAACCCTTATAGAAGGCAAGAATGTTATAGAAAATGGGATTCAATTTCAAAAGGGTCGAAGATCAATTGCAGCCTTGGGGCCGGACCCTGTTGAACCCAAGTGGGATTTGGTATCATCGTTTTGCAAACAGCGTGGCATGAGCAGGGGACCGGTTCAGTGCAGGAAGAGATGGAGCAATCTTCTTGTTGATTTCAAGAAAATCAGGAACTGGGAGTCACAGATGAAGGGAGAGGCGGAGTCTTTTTGGGTGATGAGGAATGATTTGAGGAGAGACAAGAAACTTCCAGGTTTCTTTGATAGGGATGTTTACAATGTCTTGGATGGAAAAGATGCGACTGCAAAACCAGCATCTCCACTGGCAGTCCTGTGCCCAATGCCGCTAAATTCAATACCTATGGAAGATGTGTGTCATGTGACTGAGGGGGCAGCTGCAGAAGAAGAAGAAGGAGAAGAAGAAGAAGTGGAGGAGGAGGAACCAGAGAAATTTTTCAATAGCATTCGAAATGATTCAACAGAAAATGATCTGTTTTCAGATTTTGAGGAATCTGGGCAAGAGGAGACAACCATAAACTCCAAAAAGGAACAAAAGGTGACAGGAAGTCCAACAAAAATATTCACAACTCCTGTTCCTACTCCAGGTCCGGTAAAGGGGAAACGAGGGCTAGGATCAGATACCAGGAGAGAGGAGAAACAGAAGCAGAGGCGGTTGTCAAGAGATGGATGTGAAGACAACTGCTGTGACCAGCTGATCAGAGTTCTTGAGAAAAATAGCAAAATGATGAATGCCCAACTTGAAGCCCATAACAAAAACTGCCAATTGGATAGGGAGCAAAACAAGGAGCAAAACAACAACTTATTCGCTGCTATCAAAAATGTCACAGATGCTCTGCTATTTGTTCTTATTGCTGGCATCCAGTGTACCATGGATGATAGGTCTGCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-bind_4

Protein Analysis

359

Amino Acids

40.7

Weight (kDa)

5.49

Isoelectric Point (pI)

61.01

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-bind_4 PF13837 38 - 130 4.2e-09 Myb/SANT-like DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016332)

Species Orthologous Gene IDs
fragaria_vesca FvH4_5g09440
malus_domestica MD06G1131400.v1.1 MD14G1147800.v1.1
prunus_persica Prupe.5G142400_v2.0.a1
pyrus_communis pycom06g12280
rosa_chinensis RchiOBHm_Chr7g0188751
rosa_laevigata RLG00000004664
rosa_multiflora Rmu_sc0042908.1_g000001
rosa_roxburghii Rroxscaffold_3G00266070
rosa_rugosa Rorug06G0493700
rosa_samantha Rh7AG098200 Rh7BG099700 Rh7CG101400 Rh7DG100000
rosa_wichuraiana Rw7G008460

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 108
AciI CCGC 3 cut(s) 371, 515, 841
AclWI GGATC 1 cut(s) 811
AcsI RAATTY 2 cut(s) 520, 620
AfaI GTAC 1 cut(s) 1057
AfiI CCNNNNNNNGG 2 cut(s) 773, 785
AgeI ACCGGT 1 cut(s) 286
AgsI TTSAA 8 cut(s) 179, 185, 230, 331, 525, 628, 648, 932
AhdI GACNNNNNGTC 1 cut(s) 735
AjnI CCWGG 3 cut(s) 421, 772, 812
AluBI AGCT 2 cut(s) 566, 883
AluI AGCT 2 cut(s) 566, 883
Alw26I GTCTC 3 cut(s) 125, 402, 689
AlwI GGATC 1 cut(s) 811
AlwNI CAGNNNCTG 1 cut(s) 345
Ama87I CYCGRG 1 cut(s) 13
AoxI GGCC 1 cut(s) 215
ApeKI GCWGC 5 cut(s) 81, 206, 563, 566, 998
ApoI RAATTY 2 cut(s) 520, 620
AsiGI ACCGGT 1 cut(s) 286
Asp700I GAANNNNTTC 2 cut(s) 623, 643
AspS9I GGNCC 5 cut(s) 120, 215, 220, 284, 776
AsuHPI GGTGA 2 cut(s) 397, 739
AsuII TTCGAA 1 cut(s) 637
AvaI CYCGRG 1 cut(s) 13
AvaII GGWCC 4 cut(s) 120, 220, 284, 776
BaeGI GKGCMC 1 cut(s) 509
BanI GGYRCC 1 cut(s) 108
BbsI GAAGAC 2 cut(s) 33, 870
BbvI GCAGC 5 cut(s) 93, 218, 553, 575, 985
BccI CCATC 4 cut(s) 111, 300, 452, 848
BcgI CGANNNNNNTGC 1 cut(s) 28
BciT130I CCWGG 3 cut(s) 423, 774, 814
BclI TGATCA 1 cut(s) 885
BcoDI GTCTC 3 cut(s) 125, 402, 689
BfaI CTAG 1 cut(s) 800
BfmI CTRYAG 1 cut(s) 567
BisI GCNGC 6 cut(s) 82, 207, 515, 564, 567, 999
BlsI GCNGC 6 cut(s) 83, 208, 516, 565, 568, 1000
Bme1390I CCNGG 3 cut(s) 423, 774, 814
Bme18I GGWCC 4 cut(s) 120, 220, 284, 776
BmeRI GACNNNNNGTC 1 cut(s) 735
BmeT110I CYCGRG 1 cut(s) 13
BmgT120I GGNCC 5 cut(s) 120, 215, 220, 284, 776
BmiI GGNNCC 5 cut(s) 110, 216, 222, 285, 612
BmrFI CCNGG 3 cut(s) 423, 774, 814
BmrI ACTGGG 1 cut(s) 355
BmsI GCATC 5 cut(s) 14, 457, 494, 1009, 1056
BmuI ACTGGG 1 cut(s) 355
BpiI GAAGAC 2 cut(s) 33, 870
BpmI CTGGAG 1 cut(s) 756
Bpu14I TTCGAA 1 cut(s) 637
BpuEI CTTGAG 1 cut(s) 917
BsaI GGTCTC 1 cut(s) 125
BsaJI CCNNGG 2 cut(s) 210, 1059
BsaWI WCCGGW 2 cut(s) 286, 778
Bsc4I CCNNNNNNNGG 2 cut(s) 773, 785
Bse118I RCCGGY 1 cut(s) 286
Bse1I ACTGG 3 cut(s) 350, 498, 1051
BseBI CCWGG 3 cut(s) 423, 774, 814
BseDI CCNNGG 2 cut(s) 210, 1059
BseGI GGATG 5 cut(s) 445, 463, 863, 1047, 1069
BseLI CCNNNNNNNGG 2 cut(s) 773, 785
BseMII CTCAG 1 cut(s) 546
BseNI ACTGG 3 cut(s) 350, 498, 1051
BseRI GAGGAG 5 cut(s) 418, 617, 620, 707, 836
BseSI GKGCMC 1 cut(s) 509
BseXI GCAGC 5 cut(s) 93, 218, 553, 575, 985
BsgI GTGCAG 1 cut(s) 316
BshFI GGCC 1 cut(s) 217
BshNI GGYRCC 1 cut(s) 108
BshTI ACCGGT 1 cut(s) 286
BsiHKCI CYCGRG 1 cut(s) 13
BsiSI CCGG 3 cut(s) 218, 287, 779
BslFI GGGAC 1 cut(s) 297
BslI CCNNNNNNNGG 2 cut(s) 773, 785
BsmAI GTCTC 3 cut(s) 125, 402, 689
BsmFI GGGAC 1 cut(s) 297
BsmI GAATGC 2 cut(s) 633, 925
BsnI GGCC 1 cut(s) 217
Bso31I GGTCTC 1 cut(s) 125
BsoBI CYCGRG 1 cut(s) 13
Bsp119I TTCGAA 1 cut(s) 637
Bsp1286I GDGCHC 1 cut(s) 509
Bsp143I GATC 4 cut(s) 197, 658, 803, 885
Bsp19I CCATGG 1 cut(s) 1059
BspACI CCGC 3 cut(s) 371, 515, 841
BspANI GGCC 1 cut(s) 217
BspCNI CTCAG 1 cut(s) 547
BspLI GGNNCC 5 cut(s) 110, 216, 222, 285, 612
BspMAI CTGCAG 1 cut(s) 571
BspPI GGATC 1 cut(s) 811
BspT104I TTCGAA 1 cut(s) 637
BspT107I GGYRCC 1 cut(s) 108
BspTNI GGTCTC 1 cut(s) 125
BsrFI RCCGGY 1 cut(s) 286
BsrI ACTGG 3 cut(s) 350, 498, 1051
BssAI RCCGGY 1 cut(s) 286
BssECI CCNNGG 2 cut(s) 210, 1059
BssMI GATC 4 cut(s) 197, 658, 803, 885
BssT1I CCWWGG 2 cut(s) 210, 1059
Bst2UI CCWGG 3 cut(s) 423, 774, 814
Bst4CI ACNGT 1 cut(s) 32
Bst6I CTCTTC 1 cut(s) 296
BstBI TTCGAA 1 cut(s) 637
BstC8I GCNNGC 1 cut(s) 1045
BstDEI CTNAG 1 cut(s) 555
BstDSI CCRYGG 1 cut(s) 1059
BstENI CCTNNNNNAGG 1 cut(s) 771
BstF5I GGATG 5 cut(s) 445, 463, 863, 1047, 1069
BstKTI GATC 4 cut(s) 200, 661, 806, 888
BstMAI GTCTC 3 cut(s) 125, 402, 689
BstMBI GATC 4 cut(s) 197, 658, 803, 885
BstMWI GCNNNNNNNGC 1 cut(s) 482
BstNI CCWGG 3 cut(s) 423, 774, 814
BstSCI CCNGG 3 cut(s) 421, 772, 812
BstSFI CTRYAG 1 cut(s) 567
BstSLI GKGCMC 1 cut(s) 509
BstV1I GCAGC 5 cut(s) 93, 218, 553, 575, 985
BstV2I GAAGAC 2 cut(s) 33, 870
BsuRI GGCC 1 cut(s) 217
BtgI CCRYGG 1 cut(s) 1059
BtsCI GGATG 5 cut(s) 445, 463, 863, 1047, 1069
BtsIMutI CAGTG 4 cut(s) 37, 299, 491, 1058
Cac8I GCNNGC 1 cut(s) 1045
CaiI CAGNNNCTG 1 cut(s) 345
Cfr10I RCCGGY 1 cut(s) 286
Cfr13I GGNCC 5 cut(s) 120, 215, 220, 284, 776
Csp6I GTAC 1 cut(s) 1056
CspAI ACCGGT 1 cut(s) 286
CspCI CAANNNNNGTGG 2 cut(s) 250, 285
CviAII CATG 4 cut(s) 23, 274, 548, 1060
CviJI RGCY 7 cut(s) 84, 209, 217, 566, 799, 883, 935
CviKI_1 RGCY 7 cut(s) 84, 209, 217, 566, 799, 883, 935
CviQI GTAC 1 cut(s) 1056
DdeI CTNAG 1 cut(s) 555
DpnI GATC 4 cut(s) 199, 660, 805, 887
DpnII GATC 4 cut(s) 197, 658, 803, 885
DriI GACNNNNNGTC 1 cut(s) 735
Eam1104I CTCTTC 1 cut(s) 296
Eam1105I GACNNNNNGTC 1 cut(s) 735
EarI CTCTTC 1 cut(s) 296
EciI GGCGGA 1 cut(s) 386
Eco130I CCWWGG 2 cut(s) 210, 1059
Eco31I GGTCTC 1 cut(s) 125
Eco47I GGWCC 4 cut(s) 120, 220, 284, 776
Eco88I CYCGRG 1 cut(s) 13
EcoNI CCTNNNNNAGG 1 cut(s) 771
EcoRII CCWGG 3 cut(s) 421, 772, 812
EcoT14I CCWWGG 2 cut(s) 210, 1059
ErhI CCWWGG 2 cut(s) 210, 1059
FaeI CATG 4 cut(s) 26, 277, 551, 1063
FaiI YATR 9 cut(s) 24, 146, 164, 275, 533, 549, 704, 939, 1061
FaqI GGGAC 1 cut(s) 297
FatI CATG 4 cut(s) 22, 273, 547, 1059
FbaI TGATCA 1 cut(s) 885
Fnu4HI GCNGC 6 cut(s) 82, 207, 515, 564, 567, 999
FokI GGATG 5 cut(s) 452, 470, 870, 1034, 1076
Fsp4HI GCNGC 6 cut(s) 82, 207, 515, 564, 567, 999
FspBI CTAG 1 cut(s) 800
GluI GCNGC 6 cut(s) 82, 207, 515, 564, 567, 999
GsuI CTGGAG 1 cut(s) 756
HaeIII GGCC 1 cut(s) 217
HapII CCGG 3 cut(s) 218, 287, 779
Hin1II CATG 4 cut(s) 26, 277, 551, 1063
HinfI GANTC 6 cut(s) 11, 175, 350, 374, 644, 680
HpaII CCGG 3 cut(s) 218, 287, 779
HphI GGTGA 2 cut(s) 397, 739
Hpy166II GTNNAC 2 cut(s) 445, 1056
Hpy188I TCNGA 5 cut(s) 10, 46, 670, 808, 890
Hpy188III TCNNGA 4 cut(s) 331, 340, 849, 896
Hpy8I GTNNAC 2 cut(s) 445, 1056
HpyAV CCTTC 3 cut(s) 143, 355, 575
HpyCH4III ACNGT 1 cut(s) 32
HpyCH4V TGCA 6 cut(s) 64, 206, 261, 297, 476, 569
HpyF10VI GCNNNNNNNGC 1 cut(s) 482
HpyF3I CTNAG 1 cut(s) 555
Hsp92II CATG 4 cut(s) 26, 277, 551, 1063
Ksp22I TGATCA 1 cut(s) 885
Kzo9I GATC 4 cut(s) 197, 658, 803, 885
LmnI GCTCC 4 cut(s) 78, 309, 964, 976
Lsp1109I GCAGC 5 cut(s) 93, 218, 553, 575, 985
LweI GCATC 5 cut(s) 14, 457, 494, 1009, 1056
MaeI CTAG 1 cut(s) 800
MaeIII GTNAC 5 cut(s) 351, 550, 727, 875, 1012
MalI GATC 4 cut(s) 199, 660, 805, 887
MboI GATC 4 cut(s) 197, 658, 803, 885
MfeI CAATTG 2 cut(s) 201, 953
MhlI GDGCHC 1 cut(s) 509
MluCI AATT 7 cut(s) 59, 102, 179, 201, 520, 620, 953
MlyI GAGTC 3 cut(s) 5, 359, 383
MmeI TCCRAC 2 cut(s) 69, 764
MroXI GAANNNNTTC 2 cut(s) 623, 643
MseI TTAA 2 cut(s) 137, 1078
MspA1I CMGCKG 2 cut(s) 566, 883
MspI CCGG 3 cut(s) 218, 287, 779
MspR9I CCNGG 3 cut(s) 423, 774, 814
MunI CAATTG 2 cut(s) 201, 953
Mva1269I GAATGC 2 cut(s) 633, 925
MvaI CCWGG 3 cut(s) 423, 774, 814
MwoI GCNNNNNNNGC 1 cut(s) 482
NcoI CCATGG 1 cut(s) 1059
NdeII GATC 4 cut(s) 197, 658, 803, 885
NlaIII CATG 4 cut(s) 26, 277, 551, 1063
NlaIV GGNNCC 5 cut(s) 110, 216, 222, 285, 612
NmuCI GTSAC 5 cut(s) 351, 550, 727, 875, 1012
NspV TTCGAA 1 cut(s) 637
PaeR7I CTCGAG 1 cut(s) 13
PctI GAATGC 2 cut(s) 633, 925
PdmI GAANNNNTTC 2 cut(s) 623, 643
PfeI GAWTC 3 cut(s) 175, 644, 680
PinAI ACCGGT 1 cut(s) 286
PkrI GCNGC 6 cut(s) 83, 208, 516, 565, 568, 1000
PleI GAGTC 3 cut(s) 5, 358, 382
PpsI GAGTC 3 cut(s) 5, 358, 382
Psp6I CCWGG 3 cut(s) 421, 772, 812
PspGI CCWGG 3 cut(s) 421, 772, 812
PspN4I GGNNCC 5 cut(s) 110, 216, 222, 285, 612
PspPI GGNCC 5 cut(s) 120, 215, 220, 284, 776
PspXI VCTCGAGB 1 cut(s) 13
PstI CTGCAG 1 cut(s) 571
PstNI CAGNNNCTG 1 cut(s) 345
PvuII CAGCTG 2 cut(s) 566, 883
RsaI GTAC 1 cut(s) 1057
RsaNI GTAC 1 cut(s) 1056
SaqAI TTAA 2 cut(s) 137, 1078
SatI GCNGC 6 cut(s) 82, 207, 515, 564, 567, 999
Sau3AI GATC 4 cut(s) 197, 658, 803, 885
Sau96I GGNCC 5 cut(s) 120, 215, 220, 284, 776
SchI GAGTC 3 cut(s) 5, 359, 383
ScrFI CCNGG 3 cut(s) 423, 774, 814
SduI GDGCHC 1 cut(s) 509
SetI ASST 8 cut(s) 137, 427, 532, 568, 729, 778, 885, 1073
SfaNI GCATC 5 cut(s) 14, 457, 494, 1009, 1056
SfcI CTRYAG 1 cut(s) 567
Sfr274I CTCGAG 1 cut(s) 13
SfuI TTCGAA 1 cut(s) 637
SinI GGWCC 4 cut(s) 120, 220, 284, 776
SlaI CTCGAG 1 cut(s) 13
SmlI CTYRAG 2 cut(s) 13, 896
SmoI CTYRAG 2 cut(s) 13, 896
Sse9I AATT 7 cut(s) 59, 102, 179, 201, 520, 620, 953
SsiI CCGC 3 cut(s) 371, 515, 841
SspI AATATT 1 cut(s) 750
SspMI CTAG 1 cut(s) 800
StyD4I CCNGG 3 cut(s) 421, 772, 812
StyI CCWWGG 2 cut(s) 210, 1059
TaaI ACNGT 1 cut(s) 32
TaqI TCGA 4 cut(s) 14, 115, 193, 637
TasI AATT 7 cut(s) 59, 102, 179, 201, 520, 620, 953
TauI GCSGC 1 cut(s) 517
TfiI GAWTC 3 cut(s) 175, 644, 680
Tru1I TTAA 2 cut(s) 137, 1078
Tru9I TTAA 2 cut(s) 137, 1078
TscAI CASTG 4 cut(s) 37, 299, 498, 1058
TseFI GTSAC 5 cut(s) 351, 550, 727, 875, 1012
TseI GCWGC 5 cut(s) 81, 206, 563, 566, 998
Tsp45I GTSAC 5 cut(s) 351, 550, 727, 875, 1012
TspDTI ATGAA 4 cut(s) 39, 110, 374, 932
TspGWI ACGGA 1 cut(s) 30
TspRI CASTG 4 cut(s) 37, 299, 498, 1058
VpaK11BI GGWCC 4 cut(s) 120, 220, 284, 776
XagI CCTNNNNNAGG 1 cut(s) 771
XapI RAATTY 2 cut(s) 520, 620
XcmI CCANNNNNNNNNTGG 1 cut(s) 241
XhoI CTCGAG 1 cut(s) 13
XmnI GAANNNNTTC 2 cut(s) 623, 643
XspI CTAG 1 cut(s) 800
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.