Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7C

Orthogroup ID

OG0012622

Physical Location & Seq

Genomic Coordinates Reverse (-)

2282162 .. 2284311

Gene Structure 2150 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7CG033300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 906 bp

ATGGTGACCCCAAACTGTTTTAACAACCTATTTTTCATCTTATATATATGTCATGGTTTTCTATGGTGTAGGTGGCCTATAATAGCTCAACAACTTCCTGGGAGGACAGACAATGATGTGAAGACCTACTGGAACACTAAGCTGAAAAAGAAGCTCTCAGATATGGGAATTGATCCCGTTACTCACAAGCCCTTCTCTCAAATTTTAGCCGACTATGGAAACATTGGTGGCCTACCCAAATCTGGAATGAGAATCGGGATAGGTGCTTCCCTAAACAAGGACTTGAAGAATGCAATGCTGATGAAGTCATCAGAACCATACACATCAGGCTTGTCAAACTTCAACAACAGCCATTTGGTGCCAACAACCAAAATCGAACCAATGCAAGGCACTAGCAGCACCAAATTCGACTACTACCAACCCTATGATCTTCTCACACAGCTGCAAGCCATGAAATATGTGACAGAGGTCTCAAACTCCACCACCAACACCAACCCTGCTCCTTCCCCTGTCAATTTCTACAGCGAAGGCTCATTATCTTCTTCATCCTCGTCTACTTCTTCATCTGCTGCTGTGCAAGAGAAGTCACCTCTGGCCTTTGGATGGAGTGATTTTCTCCTAGAAGACGCATTTGTGCCAACTGAAGACGCTCGTGGAGCAATGCCACAAGGCGAAATTTGGGACCAAGCTACTATGCAAGATAATATGGCCGAGTCTTCATCCAAAGACATGTTTAACCAAGCACAAACAGAAAATGTGGGCATGAGTTATGGAATGTCAAGCAATCAAGTAGAGGCTATAGCTGATCCATGCGACAGTTCATTTGTGGAAGCCATGGTAGCTAAAGAGAATGACTTGTTCTTGGAGTTTCCTGAACTACTTCTGGAAGAACCATTCTACTACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000981 GO:0000988 GO:0000989 GO:0001067 GO:0001076 GO:0001134 GO:0001135 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006357 GO:0008150 GO:0009889 GO:0009987 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0030154 GO:0031323 GO:0031326 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044424 GO:0044464 GO:0048869 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-binding

Protein Analysis

301

Amino Acids

33.44

Weight (kDa)

4.58

Isoelectric Point (pI)

51.7

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012622)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g15900
malus_domestica	MD06G1184700.v1.1 MD14G1190600.v1.1
prunus_persica	Prupe.5G183500_v2.0.a1 Prupe.5G183500_v2.0.a1 Prupe.5G183500_v2.0.a1 Prupe.5G183500_v2.0.a1
rosa_chinensis	RchiOBHm_Chr7g0180151
rosa_laevigata	RLG00000005288
rosa_multiflora	Rmu_co8520481.1_g000001 Rmu_ssc0000119.1_g000038
rosa_roxburghii	Rroxscaffold_3G00273080
rosa_rugosa	Rorug06G0430800 Rorug06G0430900
rosa_samantha	Rh7AG031400 Rh7BG031500 Rh7CG033300 Rh7DG031900
rosa_wichuraiana	Rw7G002620

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	358
AccI	GTMKAC	1 cut(s)	554
AclWI	GGATC	2 cut(s)	167, 800
AcoI	YGGCCR	1 cut(s)	708
AcsI	RAATTY	3 cut(s)	201, 404, 675
AcuI	CTGAAG	1 cut(s)	663
AfiI	CCNNNNNNNGG	4 cut(s)	242, 277, 386, 603
AflIII	ACRYGT	1 cut(s)	729
AgsI	TTSAA	2 cut(s)	286, 343
AjnI	CCWGG	1 cut(s)	97
AluBI	AGCT	7 cut(s)	86, 142, 154, 442, 689, 803, 842
AluI	AGCT	7 cut(s)	86, 142, 154, 442, 689, 803, 842
Alw26I	GTCTC	1 cut(s)	475
AlwI	GGATC	2 cut(s)	167, 800
AoxI	GGCC	4 cut(s)	74, 229, 594, 708
ApeKI	GCWGC	3 cut(s)	396, 442, 569
ApoI	RAATTY	3 cut(s)	201, 404, 675
ArsI	GACNNNNNNTTYG	2 cut(s)	806, 838
Asp700I	GAANNNNTTC	1 cut(s)	879
AspS9I	GGNCC	1 cut(s)	682
AsuHPI	GGTGA	2 cut(s)	16, 579
AvaII	GGWCC	1 cut(s)	682
BanI	GGYRCC	1 cut(s)	358
BauI	CACGAG	1 cut(s)	651
BbsI	GAAGAC	4 cut(s)	128, 630, 651, 708
BbvI	GCAGC	3 cut(s)	408, 429, 556
BccI	CCATC	1 cut(s)	597
BcgI	CGANNNNNNTGC	2 cut(s)	388, 422
BciT130I	CCWGG	1 cut(s)	99
BcoDI	GTCTC	1 cut(s)	475
BfaI	CTAG	2 cut(s)	393, 620
BfmI	CTRYAG	2 cut(s)	520, 798
BisI	GCNGC	3 cut(s)	397, 443, 570
BlsI	GCNGC	3 cut(s)	398, 444, 571
Bme1390I	CCNGG	1 cut(s)	99
Bme18I	GGWCC	1 cut(s)	682
BmgT120I	GGNCC	1 cut(s)	682
BmiI	GGNNCC	2 cut(s)	360, 683
BmrFI	CCNGG	1 cut(s)	99
BoxI	GACNNNNGTC	1 cut(s)	467
BpiI	GAAGAC	4 cut(s)	128, 630, 651, 708
BsaI	GGTCTC	1 cut(s)	475
BsaJI	CCNNGG	2 cut(s)	98, 834
Bsc4I	CCNNNNNNNGG	4 cut(s)	242, 277, 386, 603
Bse1I	ACTGG	1 cut(s)	134
Bse3DI	GCAATG	2 cut(s)	300, 666
BseBI	CCWGG	1 cut(s)	99
BseDI	CCNNGG	2 cut(s)	98, 834
BseGI	GGATG	3 cut(s)	545, 608, 719
BseLI	CCNNNNNNNGG	4 cut(s)	242, 277, 386, 603
BseMI	GCAATG	2 cut(s)	300, 666
BseMII	CTCAG	1 cut(s)	171
BseNI	ACTGG	1 cut(s)	134
BseXI	GCAGC	3 cut(s)	408, 429, 556
BshFI	GGCC	4 cut(s)	76, 231, 596, 710
BshNI	GGYRCC	1 cut(s)	358
BslFI	GGGAC	1 cut(s)	695
BslI	CCNNNNNNNGG	4 cut(s)	242, 277, 386, 603
BsmAI	GTCTC	1 cut(s)	475
BsmFI	GGGAC	1 cut(s)	695
BsmI	GAATGC	1 cut(s)	295
BsnI	GGCC	4 cut(s)	76, 231, 596, 710
Bso31I	GGTCTC	1 cut(s)	475
Bsp143I	GATC	3 cut(s)	172, 427, 805
Bsp19I	CCATGG	1 cut(s)	834
BspANI	GGCC	4 cut(s)	76, 231, 596, 710
BspCNI	CTCAG	1 cut(s)	170
BspLI	GGNNCC	2 cut(s)	360, 683
BspPI	GGATC	2 cut(s)	167, 800
BspT107I	GGYRCC	1 cut(s)	358
BspTNI	GGTCTC	1 cut(s)	475
BsrDI	GCAATG	2 cut(s)	300, 666
BsrI	ACTGG	1 cut(s)	134
BssECI	CCNNGG	2 cut(s)	98, 834
BssMI	GATC	3 cut(s)	172, 427, 805
BssSI	CACGAG	1 cut(s)	651
BssT1I	CCWWGG	1 cut(s)	834
Bst2BI	CACGAG	1 cut(s)	651
Bst2UI	CCWGG	1 cut(s)	99
Bst4CI	ACNGT	2 cut(s)	17, 818
BstC8I	GCNNGC	1 cut(s)	447
BstDEI	CTNAG	2 cut(s)	138, 157
BstDSI	CCRYGG	1 cut(s)	834
BstEII	GGTNACC	1 cut(s)	4
BstENI	CCTNNNNNAGG	1 cut(s)	275
BstF5I	GGATG	3 cut(s)	545, 608, 719
BstKTI	GATC	3 cut(s)	175, 430, 808
BstMAI	GTCTC	1 cut(s)	475
BstMBI	GATC	3 cut(s)	172, 427, 805
BstMWI	GCNNNNNNNGC	3 cut(s)	396, 656, 839
BstNI	CCWGG	1 cut(s)	99
BstNSI	RCATGY	1 cut(s)	733
BstPAI	GACNNNNGTC	1 cut(s)	467
BstPI	GGTNACC	1 cut(s)	4
BstSCI	CCNGG	1 cut(s)	97
BstSFI	CTRYAG	2 cut(s)	520, 798
BstV1I	GCAGC	3 cut(s)	408, 429, 556
BstV2I	GAAGAC	4 cut(s)	128, 630, 651, 708
BsuRI	GGCC	4 cut(s)	76, 231, 596, 710
BtgI	CCRYGG	1 cut(s)	834
BtsCI	GGATG	3 cut(s)	545, 608, 719
Cac8I	GCNNGC	1 cut(s)	447
Cfr13I	GGNCC	1 cut(s)	682
CseI	GACGC	2 cut(s)	635, 656
CviAII	CATG	6 cut(s)	53, 451, 730, 763, 810, 835
DdeI	CTNAG	2 cut(s)	138, 157
DpnI	GATC	3 cut(s)	174, 429, 807
DpnII	GATC	3 cut(s)	172, 427, 805
EaeI	YGGCCR	1 cut(s)	708
Eco130I	CCWWGG	1 cut(s)	834
Eco31I	GGTCTC	1 cut(s)	475
Eco47I	GGWCC	1 cut(s)	682
Eco57I	CTGAAG	1 cut(s)	663
Eco91I	GGTNACC	1 cut(s)	4
EcoNI	CCTNNNNNAGG	1 cut(s)	275
EcoO65I	GGTNACC	1 cut(s)	4
EcoRII	CCWGG	1 cut(s)	97
EcoT14I	CCWWGG	1 cut(s)	834
ErhI	CCWWGG	1 cut(s)	834
FaeI	CATG	6 cut(s)	56, 454, 733, 766, 813, 838
FaqI	GGGAC	1 cut(s)	695
FatI	CATG	6 cut(s)	52, 450, 729, 762, 809, 834
FblI	GTMKAC	1 cut(s)	554
Fnu4HI	GCNGC	3 cut(s)	397, 443, 570
FokI	GGATG	3 cut(s)	532, 615, 706
Fsp4HI	GCNGC	3 cut(s)	397, 443, 570
FspBI	CTAG	2 cut(s)	393, 620
GluI	GCNGC	3 cut(s)	397, 443, 570
HaeIII	GGCC	4 cut(s)	76, 231, 596, 710
HgaI	GACGC	2 cut(s)	635, 656
Hin1II	CATG	6 cut(s)	56, 454, 733, 766, 813, 838
HinfI	GANTC	2 cut(s)	252, 713
HphI	GGTGA	2 cut(s)	16, 579
Hpy166II	GTNNAC	1 cut(s)	555
Hpy188I	TCNGA	2 cut(s)	160, 313
Hpy188III	TCNNGA	4 cut(s)	243, 256, 872, 884
Hpy8I	GTNNAC	1 cut(s)	555
HpyAV	CCTTC	3 cut(s)	202, 513, 521
HpyCH4III	ACNGT	2 cut(s)	17, 818
HpyCH4V	TGCA	5 cut(s)	293, 385, 445, 577, 697
HpyF10VI	GCNNNNNNNGC	3 cut(s)	396, 656, 839
HpyF3I	CTNAG	2 cut(s)	138, 157
Hsp92II	CATG	6 cut(s)	56, 454, 733, 766, 813, 838
Kzo9I	GATC	3 cut(s)	172, 427, 805
LmnI	GCTCC	2 cut(s)	505, 656
Lsp1109I	GCAGC	3 cut(s)	408, 429, 556
MaeI	CTAG	2 cut(s)	393, 620
MaeIII	GTNAC	4 cut(s)	4, 178, 460, 585
MalI	GATC	3 cut(s)	174, 429, 807
MboI	GATC	3 cut(s)	172, 427, 805
MluCI	AATT	5 cut(s)	168, 201, 404, 514, 675
MlyI	GAGTC	1 cut(s)	722
MnlI	CCTC	5 cut(s)	96, 460, 559, 600, 787
MroXI	GAANNNNTTC	1 cut(s)	879
MseI	TTAA	2 cut(s)	21, 735
MspA1I	CMGCKG	1 cut(s)	442
MspR9I	CCNGG	1 cut(s)	99
Mva1269I	GAATGC	1 cut(s)	295
MvaI	CCWGG	1 cut(s)	99
MwoI	GCNNNNNNNGC	3 cut(s)	396, 656, 839
NcoI	CCATGG	1 cut(s)	834
NdeII	GATC	3 cut(s)	172, 427, 805
NlaIII	CATG	6 cut(s)	56, 454, 733, 766, 813, 838
NlaIV	GGNNCC	2 cut(s)	360, 683
NmeAIII	GCCGAG	1 cut(s)	736
NmuCI	GTSAC	3 cut(s)	4, 460, 585
NspI	RCATGY	1 cut(s)	733
PciI	ACATGT	1 cut(s)	729
PctI	GAATGC	1 cut(s)	295
PdmI	GAANNNNTTC	1 cut(s)	879
PfeI	GAWTC	1 cut(s)	252
PkrI	GCNGC	3 cut(s)	398, 444, 571
PleI	GAGTC	1 cut(s)	721
PpsI	GAGTC	1 cut(s)	721
PscI	ACATGT	1 cut(s)	729
PshAI	GACNNNNGTC	1 cut(s)	467
Psp6I	CCWGG	1 cut(s)	97
PspEI	GGTNACC	1 cut(s)	4
PspGI	CCWGG	1 cut(s)	97
PspN4I	GGNNCC	2 cut(s)	360, 683
PspPI	GGNCC	1 cut(s)	682
PvuII	CAGCTG	1 cut(s)	442
SaqAI	TTAA	2 cut(s)	21, 735
SatI	GCNGC	3 cut(s)	397, 443, 570
Sau3AI	GATC	3 cut(s)	172, 427, 805
Sau96I	GGNCC	1 cut(s)	682
SchI	GAGTC	1 cut(s)	722
ScrFI	CCNGG	1 cut(s)	99
SfcI	CTRYAG	2 cut(s)	520, 798
SinI	GGWCC	1 cut(s)	682
Sse9I	AATT	5 cut(s)	168, 201, 404, 514, 675
SspMI	CTAG	2 cut(s)	393, 620
StyD4I	CCNGG	1 cut(s)	97
StyI	CCWWGG	1 cut(s)	834
TaaI	ACNGT	2 cut(s)	17, 818
TaqI	TCGA	2 cut(s)	375, 408
TasI	AATT	5 cut(s)	168, 201, 404, 514, 675
TfiI	GAWTC	1 cut(s)	252
Tru1I	TTAA	2 cut(s)	21, 735
Tru9I	TTAA	2 cut(s)	21, 735
TseFI	GTSAC	3 cut(s)	4, 460, 585
TseI	GCWGC	3 cut(s)	396, 442, 569
Tsp45I	GTSAC	3 cut(s)	4, 460, 585
TspDTI	ATGAA	7 cut(s)	25, 317, 467, 534, 552, 708, 810
VpaK11BI	GGWCC	1 cut(s)	682
XagI	CCTNNNNNAGG	1 cut(s)	275
XapI	RAATTY	3 cut(s)	201, 404, 675
XceI	RCATGY	1 cut(s)	733
XmiI	GTMKAC	1 cut(s)	554
XmnI	GAANNNNTTC	1 cut(s)	879
XspI	CTAG	2 cut(s)	393, 620

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.