Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8520481.1

Orthogroup ID

OG0012622

Physical Location & Seq

Genomic Coordinates Reverse (-)

635 .. 2246

Gene Structure 1612 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8520481.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1077 bp

atggggagacctcctgcttcttgtgacaaactgatcaatgtgaagaagggcacttggactgaagaggaagatgcaaatatactcgctcatcatgtatccaagaatgggatcggacttaatagatgtgggaagagttgcaagcctaggtggagtaactacttgagggctaatctgaagcatgaaaccttcacaccccaagaggaagaattgattgttaggcttcatgcaaccattggtagcaggtggcctataatagctcaacaacttcctgggaggacagacaatgatgtgaagacctactggaacactaagctgaaaaagaagctctcagatatgggaattgatcccgttactcacaagcccttctctcaaattttagccgactatggaaacattggtggcctacccaaatctggaatgcgaattgggataggtgcttccctaaacaaggacttgaagaatgcaatgctgatgaagtcatcagaaccatacacatcagccttgtcaaacttcaacaacagccatttggtgccaacaaccaaaatcgaaccaatgcaagccactagcagcaccaaattcgacaactaccaaccctatgatcttctcacacagctgcaagccatgaaatatgtgacagaggtctcaaactccaccaccaacaccaaccctgctccttcccctgtcaatttctacagcgaaggctcattatcttcttcatcctcgtctacttcttcatctgctgctgtgcaagagaagtcacctctggcctttggatggagtgattttctcctagaagacgcatttgtgccaactgaagatgctcgcggagcaatgccacatggcgaaatttgggaccaagctactatgcaagataatatggccgagtcttcatccaaagacatgtttcaccaagcacaaacagaaaatgtgggcatgagttatggaatgtcaagcaatcaagtagaggctacagctgatccatgcgacagttcatttgtggaagccatggtagctaaagagaatgacttgttcttggagtttcctgaactacttctggaagaaccattctactactga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000981 GO:0000988 GO:0000989 GO:0001067 GO:0001076 GO:0001134 GO:0001135 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006357 GO:0008150 GO:0009889 GO:0009987 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0030154 GO:0031323 GO:0031326 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044424 GO:0044464 GO:0048869 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-binding

Protein Analysis

358

Amino Acids

39.63

Weight (kDa)

5.26

Isoelectric Point (pI)

53.5

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012622)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g15900
malus_domestica	MD06G1184700.v1.1 MD14G1190600.v1.1
prunus_persica	Prupe.5G183500_v2.0.a1 Prupe.5G183500_v2.0.a1 Prupe.5G183500_v2.0.a1 Prupe.5G183500_v2.0.a1
rosa_chinensis	RchiOBHm_Chr7g0180151
rosa_laevigata	RLG00000005288
rosa_multiflora	Rmu_co8520481.1_g000001 Rmu_ssc0000119.1_g000038
rosa_roxburghii	Rroxscaffold_3G00273080
rosa_rugosa	Rorug06G0430800 Rorug06G0430900
rosa_samantha	Rh7AG031400 Rh7BG031500 Rh7CG033300 Rh7DG031900
rosa_wichuraiana	Rw7G002620

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	231
Acc36I	ACCTGC	1 cut(s)	231
AccB1I	GGYRCC	1 cut(s)	529
AccI	GTMKAC	1 cut(s)	725
AccII	CGCG	1 cut(s)	825
AciI	CCGC	1 cut(s)	825
AclWI	GGATC	3 cut(s)	116, 338, 971
AcoI	YGGCCR	1 cut(s)	879
AcsI	RAATTY	3 cut(s)	372, 575, 846
AcuI	CTGAAG	3 cut(s)	81, 194, 834
AfiI	CCNNNNNNNGG	4 cut(s)	105, 413, 448, 774
AflIII	ACRYGT	1 cut(s)	900
AgsI	TTSAA	2 cut(s)	457, 514
AjnI	CCWGG	1 cut(s)	268
AluBI	AGCT	7 cut(s)	257, 313, 325, 613, 860, 974, 1013
AluI	AGCT	7 cut(s)	257, 313, 325, 613, 860, 974, 1013
Alw26I	GTCTC	1 cut(s)	646
AlwI	GGATC	3 cut(s)	116, 338, 971
AoxI	GGCC	4 cut(s)	245, 400, 765, 879
ApeKI	GCWGC	3 cut(s)	567, 613, 740
ApoI	RAATTY	3 cut(s)	372, 575, 846
ArsI	GACNNNNNNTTYG	2 cut(s)	977, 1009
Asp700I	GAANNNNTTC	1 cut(s)	1050
AspA2I	CCTAGG	1 cut(s)	143
AspS9I	GGNCC	1 cut(s)	853
AsuHPI	GGTGA	2 cut(s)	750, 899
AvaII	GGWCC	1 cut(s)	853
AvrII	CCTAGG	1 cut(s)	143
BaeGI	GKGCMC	1 cut(s)	53
BanI	GGYRCC	1 cut(s)	529
BbsI	GAAGAC	3 cut(s)	299, 801, 879
BbvI	GCAGC	3 cut(s)	579, 600, 727
BccI	CCATC	1 cut(s)	768
BcgI	CGANNNNNNTGC	2 cut(s)	559, 593
BciT130I	CCWGG	1 cut(s)	270
BciVI	GTATCC	1 cut(s)	106
BclI	TGATCA	1 cut(s)	33
BcoDI	GTCTC	1 cut(s)	646
BfaI	CTAG	3 cut(s)	144, 564, 791
BfmI	CTRYAG	2 cut(s)	691, 969
BfuAI	ACCTGC	1 cut(s)	231
BfuI	GTATCC	1 cut(s)	106
BisI	GCNGC	3 cut(s)	568, 614, 741
BlnI	CCTAGG	1 cut(s)	143
BlsI	GCNGC	3 cut(s)	569, 615, 742
Bme1390I	CCNGG	1 cut(s)	270
Bme18I	GGWCC	1 cut(s)	853
BmgT120I	GGNCC	1 cut(s)	853
BmiI	GGNNCC	2 cut(s)	531, 854
BmrFI	CCNGG	1 cut(s)	270
BmsI	GCATC	2 cut(s)	61, 808
BoxI	GACNNNNGTC	1 cut(s)	638
BpiI	GAAGAC	3 cut(s)	299, 801, 879
BpuEI	CTTGAG	1 cut(s)	181
BsaI	GGTCTC	1 cut(s)	646
BsaJI	CCNNGG	3 cut(s)	143, 269, 1005
Bsc4I	CCNNNNNNNGG	4 cut(s)	105, 413, 448, 774
Bse1I	ACTGG	1 cut(s)	305
Bse3DI	GCAATG	2 cut(s)	471, 837
BseBI	CCWGG	1 cut(s)	270
BseDI	CCNNGG	3 cut(s)	143, 269, 1005
BseGI	GGATG	3 cut(s)	716, 779, 890
BseLI	CCNNNNNNNGG	4 cut(s)	105, 413, 448, 774
BseMI	GCAATG	2 cut(s)	471, 837
BseMII	CTCAG	1 cut(s)	342
BseNI	ACTGG	1 cut(s)	305
BseSI	GKGCMC	1 cut(s)	53
BseXI	GCAGC	3 cut(s)	579, 600, 727
Bsh1236I	CGCG	1 cut(s)	825
BshFI	GGCC	4 cut(s)	247, 402, 767, 881
BshNI	GGYRCC	1 cut(s)	529
BslFI	GGGAC	1 cut(s)	866
BslI	CCNNNNNNNGG	4 cut(s)	105, 413, 448, 774
BsmAI	GTCTC	1 cut(s)	646
BsmFI	GGGAC	1 cut(s)	866
BsmI	GAATGC	2 cut(s)	423, 466
BsnI	GGCC	4 cut(s)	247, 402, 767, 881
Bso31I	GGTCTC	1 cut(s)	646
Bsp1286I	GDGCHC	1 cut(s)	53
Bsp143I	GATC	5 cut(s)	33, 108, 343, 598, 976
Bsp19I	CCATGG	1 cut(s)	1005
BspACI	CCGC	1 cut(s)	825
BspANI	GGCC	4 cut(s)	247, 402, 767, 881
BspCNI	CTCAG	1 cut(s)	341
BspFNI	CGCG	1 cut(s)	825
BspLI	GGNNCC	2 cut(s)	531, 854
BspMI	ACCTGC	1 cut(s)	231
BspPI	GGATC	3 cut(s)	116, 338, 971
BspT107I	GGYRCC	1 cut(s)	529
BspTNI	GGTCTC	1 cut(s)	646
BsrDI	GCAATG	2 cut(s)	471, 837
BsrI	ACTGG	1 cut(s)	305
BssECI	CCNNGG	3 cut(s)	143, 269, 1005
BssMI	GATC	5 cut(s)	33, 108, 343, 598, 976
BssT1I	CCWWGG	2 cut(s)	143, 1005
Bst2UI	CCWGG	1 cut(s)	270
Bst4CI	ACNGT	1 cut(s)	989
Bst6I	CTCTTC	2 cut(s)	57, 125
BstC8I	GCNNGC	4 cut(s)	140, 558, 618, 823
BstDEI	CTNAG	2 cut(s)	309, 328
BstDSI	CCRYGG	1 cut(s)	1005
BstENI	CCTNNNNNAGG	1 cut(s)	446
BstF5I	GGATG	3 cut(s)	716, 779, 890
BstFNI	CGCG	1 cut(s)	825
BstKTI	GATC	5 cut(s)	36, 111, 346, 601, 979
BstMAI	GTCTC	1 cut(s)	646
BstMBI	GATC	5 cut(s)	33, 108, 343, 598, 976
BstMWI	GCNNNNNNNGC	2 cut(s)	827, 1010
BstNI	CCWGG	1 cut(s)	270
BstNSI	RCATGY	1 cut(s)	904
BstPAI	GACNNNNGTC	1 cut(s)	638
BstSCI	CCNGG	1 cut(s)	268
BstSFI	CTRYAG	2 cut(s)	691, 969
BstSLI	GKGCMC	1 cut(s)	53
BstUI	CGCG	1 cut(s)	825
BstV1I	GCAGC	3 cut(s)	579, 600, 727
BstV2I	GAAGAC	3 cut(s)	299, 801, 879
BsuI	GTATCC	1 cut(s)	106
BsuRI	GGCC	4 cut(s)	247, 402, 767, 881
BtgI	CCRYGG	1 cut(s)	1005
BtsCI	GGATG	3 cut(s)	716, 779, 890
BveI	ACCTGC	1 cut(s)	231
Cac8I	GCNNGC	4 cut(s)	140, 558, 618, 823
Cfr13I	GGNCC	1 cut(s)	853
CseI	GACGC	1 cut(s)	806
CviAII	CATG	9 cut(s)	92, 179, 224, 622, 839, 901, 934, 981, 1006
DdeI	CTNAG	2 cut(s)	309, 328
DpnI	GATC	5 cut(s)	35, 110, 345, 600, 978
DpnII	GATC	5 cut(s)	33, 108, 343, 598, 976
EaeI	YGGCCR	1 cut(s)	879
Eam1104I	CTCTTC	2 cut(s)	57, 125
EarI	CTCTTC	2 cut(s)	57, 125
Eco130I	CCWWGG	2 cut(s)	143, 1005
Eco31I	GGTCTC	1 cut(s)	646
Eco47I	GGWCC	1 cut(s)	853
Eco57I	CTGAAG	3 cut(s)	81, 194, 834
EcoNI	CCTNNNNNAGG	1 cut(s)	446
EcoRII	CCWGG	1 cut(s)	268
EcoT14I	CCWWGG	2 cut(s)	143, 1005
ErhI	CCWWGG	2 cut(s)	143, 1005
FaeI	CATG	9 cut(s)	95, 182, 227, 625, 842, 904, 937, 984, 1009
FaqI	GGGAC	1 cut(s)	866
FatI	CATG	9 cut(s)	91, 178, 223, 621, 838, 900, 933, 980, 1005
FbaI	TGATCA	1 cut(s)	33
FblI	GTMKAC	1 cut(s)	725
Fnu4HI	GCNGC	3 cut(s)	568, 614, 741
FokI	GGATG	3 cut(s)	703, 786, 877
Fsp4HI	GCNGC	3 cut(s)	568, 614, 741
FspBI	CTAG	3 cut(s)	144, 564, 791
GluI	GCNGC	3 cut(s)	568, 614, 741
HaeIII	GGCC	4 cut(s)	247, 402, 767, 881
HgaI	GACGC	1 cut(s)	806
Hin1II	CATG	9 cut(s)	95, 182, 227, 625, 842, 904, 937, 984, 1009
HinfI	GANTC	1 cut(s)	884
HphI	GGTGA	2 cut(s)	750, 899
Hpy166II	GTNNAC	1 cut(s)	726
Hpy188I	TCNGA	4 cut(s)	113, 174, 331, 484
Hpy188III	TCNNGA	3 cut(s)	414, 1043, 1055
Hpy8I	GTNNAC	1 cut(s)	726
HpyAV	CCTTC	5 cut(s)	40, 196, 373, 684, 692
HpyCH4III	ACNGT	1 cut(s)	989
HpyCH4V	TGCA	8 cut(s)	74, 138, 227, 464, 556, 616, 748, 868
HpyF10VI	GCNNNNNNNGC	2 cut(s)	827, 1010
HpyF3I	CTNAG	2 cut(s)	309, 328
Hsp92II	CATG	9 cut(s)	95, 182, 227, 625, 842, 904, 937, 984, 1009
Ksp22I	TGATCA	1 cut(s)	33
Kzo9I	GATC	5 cut(s)	33, 108, 343, 598, 976
LmnI	GCTCC	2 cut(s)	676, 827
Lsp1109I	GCAGC	3 cut(s)	579, 600, 727
LweI	GCATC	2 cut(s)	61, 808
MaeI	CTAG	3 cut(s)	144, 564, 791
MaeIII	GTNAC	5 cut(s)	23, 152, 349, 631, 756
MalI	GATC	5 cut(s)	35, 110, 345, 600, 978
MboI	GATC	5 cut(s)	33, 108, 343, 598, 976
MhlI	GDGCHC	1 cut(s)	53
MluCI	AATT	7 cut(s)	206, 339, 372, 423, 575, 685, 846
MlyI	GAGTC	1 cut(s)	893
MnlI	CCTC	9 cut(s)	21, 58, 156, 193, 267, 631, 730, 771, 958
MroXI	GAANNNNTTC	1 cut(s)	1050
MseI	TTAA	1 cut(s)	117
MspA1I	CMGCKG	2 cut(s)	613, 974
MspR9I	CCNGG	1 cut(s)	270
Mva1269I	GAATGC	2 cut(s)	423, 466
MvaI	CCWGG	1 cut(s)	270
MvnI	CGCG	1 cut(s)	825
MwoI	GCNNNNNNNGC	2 cut(s)	827, 1010
NcoI	CCATGG	1 cut(s)	1005
NdeII	GATC	5 cut(s)	33, 108, 343, 598, 976
NlaIII	CATG	9 cut(s)	95, 182, 227, 625, 842, 904, 937, 984, 1009
NlaIV	GGNNCC	2 cut(s)	531, 854
NmeAIII	GCCGAG	1 cut(s)	907
NmuCI	GTSAC	3 cut(s)	23, 631, 756
NspI	RCATGY	1 cut(s)	904
PaqCI	CACCTGC	1 cut(s)	231
PciI	ACATGT	1 cut(s)	900
PctI	GAATGC	2 cut(s)	423, 466
PdmI	GAANNNNTTC	1 cut(s)	1050
PkrI	GCNGC	3 cut(s)	569, 615, 742
PleI	GAGTC	1 cut(s)	892
PpsI	GAGTC	1 cut(s)	892
PscI	ACATGT	1 cut(s)	900
PshAI	GACNNNNGTC	1 cut(s)	638
Psp6I	CCWGG	1 cut(s)	268
PspGI	CCWGG	1 cut(s)	268
PspN4I	GGNNCC	2 cut(s)	531, 854
PspPI	GGNCC	1 cut(s)	853
PvuII	CAGCTG	2 cut(s)	613, 974
SaqAI	TTAA	1 cut(s)	117
SatI	GCNGC	3 cut(s)	568, 614, 741
Sau3AI	GATC	5 cut(s)	33, 108, 343, 598, 976
Sau96I	GGNCC	1 cut(s)	853
SchI	GAGTC	1 cut(s)	893
ScrFI	CCNGG	1 cut(s)	270
SduI	GDGCHC	1 cut(s)	53
SfaNI	GCATC	2 cut(s)	61, 808
SfcI	CTRYAG	2 cut(s)	691, 969
SinI	GGWCC	1 cut(s)	853
SmlI	CTYRAG	1 cut(s)	160
SmoI	CTYRAG	1 cut(s)	160
Sse9I	AATT	7 cut(s)	206, 339, 372, 423, 575, 685, 846
SsiI	CCGC	1 cut(s)	825
SspMI	CTAG	3 cut(s)	144, 564, 791
StyD4I	CCNGG	1 cut(s)	268
StyI	CCWWGG	2 cut(s)	143, 1005
TaaI	ACNGT	1 cut(s)	989
TaqI	TCGA	2 cut(s)	546, 579
TasI	AATT	7 cut(s)	206, 339, 372, 423, 575, 685, 846
Tru1I	TTAA	1 cut(s)	117
Tru9I	TTAA	1 cut(s)	117
TseFI	GTSAC	3 cut(s)	23, 631, 756
TseI	GCWGC	3 cut(s)	567, 613, 740
Tsp45I	GTSAC	3 cut(s)	23, 631, 756
TspDTI	ATGAA	8 cut(s)	195, 212, 488, 638, 705, 723, 879, 981
VpaK11BI	GGWCC	1 cut(s)	853
XagI	CCTNNNNNAGG	1 cut(s)	446
XapI	RAATTY	3 cut(s)	372, 575, 846
XceI	RCATGY	1 cut(s)	904
XmaJI	CCTAGG	1 cut(s)	143
XmiI	GTMKAC	1 cut(s)	725
XmnI	GAANNNNTTC	1 cut(s)	1050
XspI	CTAG	3 cut(s)	144, 564, 791

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.