Rorug06G0430900
MYB Family

Transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000006
OG0012622
Physical Location & Seq
Forward (+)
56632572 .. 56635749
3178 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug06G0430900.1

Sequence Viewer

Length: 981 bp
ATGGCTCCATTAACACCTTTCTCGCTCTCTCTATTAACCCTTCTCGGTCTATTAACATCAGGAGCGCTGTCAACGACATTCACAATGGTAAACAAATGCGAGTACACAGTGTGGCCGGGCATTCTCTCCAACGCCGGCGTTCCGCCGCTTCCGACCACCGGCTTCGCTCTCCAGAAAGGCGAGACCAAGGCCCTAACCGCCCCCGCCTCCTGGGGCGGCCGCTTCTGGGGCCGAACCCTCTGCACCCACGACTCCACCGGAAAATTCTCCTGCGTCACAGGCGATTGCGGCTCCGGAAAGCTAGAATGCTCCGGAAGCGGCGCTGCCCCTCCCGCAACTCTCGCCGAGTTCACCTTAGACGGTGACGCCGGCCTTGACTTCTTTGACGTCAGCCTCGTCGACGGTTACAACCTCCCTATGCTGGTGGTTCCCCAGGGTGGGACCGGCACCAATTGTACGAACACCGGGTGCGTGGTCGACCTTAACGGCGTTTGTCCCTCGGAGCTCAAGGTGACTAGCGCTGACGGAAGCGAAGGCGTCGCGTGCAAGAGCGCGTGCGAGGCGTTCCAGCAGCCGCAGTACTGTTGCAGCGGCGCGTACGCTACACCCGACACGTGCAAGCCCTCTTCCTACTCGCAGGTATTCAAGAACGCGTGCCCTCACGCGTACAGTTACGCATACGACGATAAGACCAGCACCTTCACATGCGCCAATGCCGATTACACCATCACCTTCTGTCCCTCTCCGAACACCAGTCAGAAAGCTTCACAAGGGCAAACCACCCAGCCGGCTCAGACCAGCAACTCGACGGAGATAAACAGTACAATGGTGTATGAAGGCTCCGATGACGGAAGCGAAGCATGGTCGTCGTCGTCGTCCACGTCCGTCCACGTGTTCTCATCACATGCAACCGCGGCAGCCGTCAGCGTCACGGTGGCTGTTTGGCAGTTGTGGCAGCAAGCACCTCTTCTAACTTGTTAG

Protein Analysis

326

Amino Acids

33.87

Weight (kDa)

4.55

Isoelectric Point (pI)

37.78

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Thaumatin PF00314 31 - 247 2.2e-86 Thaumatin family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 390
Acc36I ACCTGC 1 cut(s) 628
AccB1I GGYRCC 1 cut(s) 446
AccI GTMKAC 2 cut(s) 399, 477
AccII CGCG 6 cut(s) 542, 554, 596, 653, 665, 914
AccIII TCCGGA 2 cut(s) 293, 311
AcoI YGGCCR 2 cut(s) 113, 217
AcsI RAATTY 1 cut(s) 263
AcvI CACGTG 2 cut(s) 615, 892
AcyI GRCGYC 3 cut(s) 366, 387, 537
AdeI CACNNNGTG 2 cut(s) 111, 468
AfaI GTAC 6 cut(s) 104, 457, 581, 599, 668, 823
AfeI AGCGCT 2 cut(s) 66, 520
AfiI CCNNNNNNNGG 6 cut(s) 158, 210, 226, 421, 437, 438
AflIII ACRYGT 4 cut(s) 612, 651, 663, 891
AgsI TTSAA 1 cut(s) 646
AjiI CACGTC 1 cut(s) 882
AjnI CCWGG 2 cut(s) 209, 432
AluBI AGCT 3 cut(s) 301, 505, 764
AluI AGCT 3 cut(s) 301, 505, 764
Alw21I GWGCWC 1 cut(s) 507
Alw26I GTCTC 1 cut(s) 176
Aor13HI TCCGGA 2 cut(s) 293, 311
Aor51HI AGCGCT 2 cut(s) 66, 520
AoxI GGCC 5 cut(s) 113, 189, 217, 229, 370
ApeKI GCWGC 5 cut(s) 323, 571, 588, 917, 955
ApoI RAATTY 1 cut(s) 263
AspLEI GCGC 6 cut(s) 67, 323, 521, 554, 596, 710
AspS9I GGNCC 3 cut(s) 190, 229, 441
AsuC2I CCSGG 2 cut(s) 117, 466
AsuHPI GGTGA 4 cut(s) 343, 374, 523, 721
AvaII GGWCC 1 cut(s) 441
BaeGI GKGCMC 1 cut(s) 659
BanI GGYRCC 1 cut(s) 446
BanII GRGCYC 1 cut(s) 507
BbrPI CACGTG 2 cut(s) 615, 892
Bbv12I GWGCWC 1 cut(s) 507
BbvI GCAGC 5 cut(s) 310, 583, 600, 929, 967
BccI CCATC 1 cut(s) 734
BceAI ACGGC 2 cut(s) 502, 905
BcgI CGANNNNNNTGC 4 cut(s) 222, 256, 849, 883
BciT130I CCWGG 2 cut(s) 211, 434
BcnI CCSGG 2 cut(s) 117, 466
BcoDI GTCTC 1 cut(s) 176
BfaI CTAG 2 cut(s) 302, 516
BfoI RGCGCY 3 cut(s) 68, 324, 522
BfuAI ACCTGC 1 cut(s) 628
BmcAI AGTACT 1 cut(s) 581
Bme1390I CCNGG 4 cut(s) 117, 211, 434, 466
Bme18I GGWCC 1 cut(s) 441
BmgBI CACGTC 1 cut(s) 882
BmgT120I GGNCC 3 cut(s) 190, 229, 441
BmiI GGNNCC 7 cut(s) 6, 230, 292, 429, 442, 448, 841
BmrFI CCNGG 4 cut(s) 117, 211, 434, 466
BpmI CTGGAG 1 cut(s) 155
BpuEI CTTGAG 1 cut(s) 491
BpuMI CCSGG 2 cut(s) 117, 466
BsaAI YACGTR 2 cut(s) 615, 892
BsaHI GRCGYC 3 cut(s) 366, 387, 537
BsaI GGTCTC 1 cut(s) 176
BsaJI CCNNGG 6 cut(s) 186, 210, 432, 433, 498, 912
BsaWI WCCGGW 3 cut(s) 257, 293, 311
Bsc4I CCNNNNNNNGG 6 cut(s) 158, 210, 226, 421, 437, 438
Bse118I RCCGGY 5 cut(s) 134, 158, 368, 443, 787
Bse1I ACTGG 1 cut(s) 753
BseAI TCCGGA 2 cut(s) 293, 311
BseBI CCWGG 2 cut(s) 211, 434
BseDI CCNNGG 6 cut(s) 186, 210, 432, 433, 498, 912
BseLI CCNNNNNNNGG 6 cut(s) 158, 210, 226, 421, 437, 438
BseMII CTCAG 1 cut(s) 806
BseNI ACTGG 1 cut(s) 753
BseSI GKGCMC 1 cut(s) 659
BseX3I CGGCCG 1 cut(s) 217
BseXI GCAGC 5 cut(s) 310, 583, 600, 929, 967
BseYI CCCAGC 1 cut(s) 783
BsgI GTGCAG 1 cut(s) 226
Bsh1236I CGCG 6 cut(s) 542, 554, 596, 653, 665, 914
Bsh1285I CGRYCG 1 cut(s) 220
BshFI GGCC 5 cut(s) 115, 191, 219, 231, 372
BshNI GGYRCC 1 cut(s) 446
BsiEI CGRYCG 1 cut(s) 220
BsiHKAI GWGCWC 1 cut(s) 507
BsiWI CGTACG 1 cut(s) 597
BslFI GGGAC 3 cut(s) 454, 480, 723
BslI CCNNNNNNNGG 6 cut(s) 158, 210, 226, 421, 437, 438
BsmAI GTCTC 1 cut(s) 176
BsmFI GGGAC 3 cut(s) 454, 480, 723
BsmI GAATGC 2 cut(s) 120, 311
BsnI GGCC 5 cut(s) 115, 191, 219, 231, 372
Bso31I GGTCTC 1 cut(s) 176
Bsp1286I GDGCHC 2 cut(s) 507, 659
Bsp13I TCCGGA 2 cut(s) 293, 311
BspANI GGCC 5 cut(s) 115, 191, 219, 231, 372
BspCNI CTCAG 1 cut(s) 805
BspEI TCCGGA 2 cut(s) 293, 311
BspFNI CGCG 6 cut(s) 542, 554, 596, 653, 665, 914
BspLI GGNNCC 7 cut(s) 6, 230, 292, 429, 442, 448, 841
BspMI ACCTGC 1 cut(s) 628
BspT107I GGYRCC 1 cut(s) 446
BspTNI GGTCTC 1 cut(s) 176
BsrFI RCCGGY 5 cut(s) 134, 158, 368, 443, 787
BsrI ACTGG 1 cut(s) 753
BssAI RCCGGY 5 cut(s) 134, 158, 368, 443, 787
BssECI CCNNGG 6 cut(s) 186, 210, 432, 433, 498, 912
BssNI GRCGYC 3 cut(s) 366, 387, 537
BssT1I CCWWGG 1 cut(s) 186
Bst2UI CCWGG 2 cut(s) 211, 434
Bst4CI ACNGT 7 cut(s) 109, 362, 404, 584, 671, 821, 934
Bst6I CTCTTC 2 cut(s) 631, 972
BstACI GRCGYC 3 cut(s) 366, 387, 537
BstBAI YACGTR 2 cut(s) 615, 892
BstC8I GCNNGC 8 cut(s) 136, 370, 544, 556, 620, 655, 789, 960
BstDEI CTNAG 2 cut(s) 355, 792
BstDSI CCRYGG 1 cut(s) 912
BstFNI CGCG 6 cut(s) 542, 554, 596, 653, 665, 914
BstH2I RGCGCY 3 cut(s) 68, 324, 522
BstHHI GCGC 6 cut(s) 67, 323, 521, 554, 596, 710
BstMAI GTCTC 1 cut(s) 176
BstMCI CGRYCG 1 cut(s) 220
BstNI CCWGG 2 cut(s) 211, 434
BstNSI RCATGY 2 cut(s) 708, 908
BstSCI CCNGG 4 cut(s) 115, 209, 432, 464
BstSLI GKGCMC 1 cut(s) 659
BstUI CGCG 6 cut(s) 542, 554, 596, 653, 665, 914
BstV1I GCAGC 5 cut(s) 310, 583, 600, 929, 967
BstZI CGGCCG 1 cut(s) 217
BsuRI GGCC 5 cut(s) 115, 191, 219, 231, 372
BtgI CCRYGG 1 cut(s) 912
BtrI CACGTC 1 cut(s) 882
BtsIMutI CAGTG 1 cut(s) 114
BveI ACCTGC 1 cut(s) 628
Cac8I GCNNGC 8 cut(s) 136, 370, 544, 556, 620, 655, 789, 960
CciNI GCGGCCGC 1 cut(s) 217
CfoI GCGC 6 cut(s) 67, 323, 521, 554, 596, 710
Cfr10I RCCGGY 5 cut(s) 134, 158, 368, 443, 787
Cfr13I GGNCC 3 cut(s) 190, 229, 441
Cfr42I CCGCGG 1 cut(s) 915
CseI GACGC 4 cut(s) 262, 374, 526, 916
Csp6I GTAC 6 cut(s) 103, 456, 580, 598, 667, 822
CviAII CATG 3 cut(s) 705, 861, 905
CviQI GTAC 6 cut(s) 103, 456, 580, 598, 667, 822
DdeI CTNAG 2 cut(s) 355, 792
DraIII CACNNNGTG 2 cut(s) 111, 468
EaeI YGGCCR 2 cut(s) 113, 217
EagI CGGCCG 1 cut(s) 217
Eam1104I CTCTTC 2 cut(s) 631, 972
EarI CTCTTC 2 cut(s) 631, 972
EciI GGCGGA 1 cut(s) 132
Ecl136II GAGCTC 1 cut(s) 505
EclXI CGGCCG 1 cut(s) 217
Eco130I CCWWGG 1 cut(s) 186
Eco24I GRGCYC 1 cut(s) 507
Eco31I GGTCTC 1 cut(s) 176
Eco47I GGWCC 1 cut(s) 441
Eco47III AGCGCT 2 cut(s) 66, 520
Eco52I CGGCCG 1 cut(s) 217
Eco53kI GAGCTC 1 cut(s) 505
Eco72I CACGTG 2 cut(s) 615, 892
EcoICRI GAGCTC 1 cut(s) 505
EcoO109I RGGNCCY 1 cut(s) 190
EcoRII CCWGG 2 cut(s) 209, 432
EcoT14I CCWWGG 1 cut(s) 186
EcoT38I GRGCYC 1 cut(s) 507
ErhI CCWWGG 1 cut(s) 186
FaeI CATG 3 cut(s) 708, 864, 908
FaiI YATR 6 cut(s) 419, 679, 706, 834, 862, 906
FalI AAGNNNNNCTT 1 cut(s) 951
FaqI GGGAC 3 cut(s) 454, 480, 723
FatI CATG 3 cut(s) 704, 860, 904
FauI CCCGC 2 cut(s) 211, 340
FblI GTMKAC 2 cut(s) 399, 477
FriOI GRGCYC 1 cut(s) 507
FspBI CTAG 2 cut(s) 302, 516
GlaI GCGC 6 cut(s) 66, 322, 520, 553, 595, 709
GsaI CCCAGC 1 cut(s) 787
GsuI CTGGAG 1 cut(s) 155
HaeII RGCGCY 3 cut(s) 68, 324, 522
HaeIII GGCC 5 cut(s) 115, 191, 219, 231, 372
HgaI GACGC 4 cut(s) 262, 374, 526, 916
HhaI GCGC 6 cut(s) 67, 323, 521, 554, 596, 710
Hin1I GRCGYC 3 cut(s) 366, 387, 537
Hin1II CATG 3 cut(s) 708, 864, 908
Hin6I GCGC 6 cut(s) 65, 321, 519, 552, 594, 708
HinP1I GCGC 6 cut(s) 65, 321, 519, 552, 594, 708
HincII GTYRAC 3 cut(s) 72, 400, 478
HindII GTYRAC 3 cut(s) 72, 400, 478
HindIII AAGCTT 1 cut(s) 762
HinfI GANTC 1 cut(s) 251
HphI GGTGA 4 cut(s) 343, 374, 523, 721
Hpy166II GTNNAC 8 cut(s) 72, 91, 105, 351, 400, 478, 879, 889
Hpy188I TCNGA 6 cut(s) 153, 502, 747, 759, 795, 844
Hpy188III TCNNGA 5 cut(s) 60, 172, 294, 312, 646
Hpy8I GTNNAC 8 cut(s) 72, 91, 105, 351, 400, 478, 879, 889
Hpy99I CGWCG 8 cut(s) 401, 404, 542, 686, 811, 871, 874, 877
HpyAV CCTTC 5 cut(s) 50, 527, 709, 742, 830
HpyCH4III ACNGT 7 cut(s) 109, 362, 404, 584, 671, 821, 934
HpyCH4IV ACGT 4 cut(s) 387, 614, 881, 891
HpyCH4V TGCA 5 cut(s) 243, 546, 588, 618, 908
HpyF3I CTNAG 2 cut(s) 355, 792
HpySE526I ACGT 4 cut(s) 387, 614, 881, 891
Hsp92I GRCGYC 3 cut(s) 366, 387, 537
Hsp92II CATG 3 cut(s) 708, 864, 908
HspAI GCGC 6 cut(s) 65, 321, 519, 552, 594, 708
Kpn2I TCCGGA 2 cut(s) 293, 311
KroI GCCGGC 3 cut(s) 134, 368, 787
KroNI GCCGGC 3 cut(s) 136, 370, 789
KspI CCGCGG 1 cut(s) 915
LmnI GCTCC 6 cut(s) 10, 62, 296, 314, 502, 845
Lsp1109I GCAGC 5 cut(s) 310, 583, 600, 929, 967
MaeI CTAG 2 cut(s) 302, 516
MaeII ACGT 4 cut(s) 387, 614, 881, 891
MaeIII GTNAC 6 cut(s) 274, 362, 404, 511, 671, 928
MboII GAAGA 2 cut(s) 618, 959
MfeI CAATTG 1 cut(s) 451
MhlI GDGCHC 2 cut(s) 507, 659
MluCI AATT 2 cut(s) 263, 451
MluI ACGCGT 2 cut(s) 651, 663
MlyI GAGTC 1 cut(s) 245
MmeI TCCRAC 2 cut(s) 153, 176
MreI CGCCGGCG 1 cut(s) 134
MroI TCCGGA 2 cut(s) 293, 311
MroNI GCCGGC 3 cut(s) 134, 368, 787
MseI TTAA 4 cut(s) 11, 35, 53, 483
MspA1I CMGCKG 2 cut(s) 591, 914
MspR9I CCNGG 4 cut(s) 117, 211, 434, 466
MunI CAATTG 1 cut(s) 451
Mva1269I GAATGC 2 cut(s) 120, 311
MvaI CCWGG 2 cut(s) 211, 434
MvnI CGCG 6 cut(s) 542, 554, 596, 653, 665, 914
NaeI GCCGGC 3 cut(s) 136, 370, 789
NciI CCSGG 2 cut(s) 117, 466
NgoMIV GCCGGC 3 cut(s) 134, 368, 787
NlaIII CATG 3 cut(s) 708, 864, 908
NlaIV GGNNCC 7 cut(s) 6, 230, 292, 429, 442, 448, 841
NmeAIII GCCGAG 1 cut(s) 370
NmuCI GTSAC 4 cut(s) 274, 362, 511, 928
NotI GCGGCCGC 1 cut(s) 217
NspI RCATGY 2 cut(s) 708, 908
PasI CCCWGGG 1 cut(s) 433
PcsI WCGNNNNNNNCGW 5 cut(s) 393, 606, 681, 872, 878
PctI GAATGC 2 cut(s) 120, 311
PdiI GCCGGC 3 cut(s) 136, 370, 789
Pfl23II CGTACG 1 cut(s) 597
PleI GAGTC 1 cut(s) 245
PmaCI CACGTG 2 cut(s) 615, 892
PmlI CACGTG 2 cut(s) 615, 892
PpsI GAGTC 1 cut(s) 245
Ppu21I YACGTR 2 cut(s) 615, 892
Psp124BI GAGCTC 1 cut(s) 507
Psp6I CCWGG 2 cut(s) 209, 432
PspCI CACGTG 2 cut(s) 615, 892
PspFI CCCAGC 1 cut(s) 783
PspGI CCWGG 2 cut(s) 209, 432
PspLI CGTACG 1 cut(s) 597
PspN4I GGNNCC 7 cut(s) 6, 230, 292, 429, 442, 448, 841
PspPI GGNCC 3 cut(s) 190, 229, 441
RsaI GTAC 6 cut(s) 104, 457, 581, 599, 668, 823
RsaNI GTAC 6 cut(s) 103, 456, 580, 598, 667, 822
SacI GAGCTC 1 cut(s) 507
SacII CCGCGG 1 cut(s) 915
SalI GTCGAC 2 cut(s) 398, 476
SaqAI TTAA 4 cut(s) 11, 35, 53, 483
Sau96I GGNCC 3 cut(s) 190, 229, 441
ScaI AGTACT 1 cut(s) 581
SchI GAGTC 1 cut(s) 245
ScrFI CCNGG 4 cut(s) 117, 211, 434, 466
SduI GDGCHC 2 cut(s) 507, 659
Sfr303I CCGCGG 1 cut(s) 915
SgrAI CRCCGGYG 1 cut(s) 134
SgrBI CCGCGG 1 cut(s) 915
SgrDI CGTCGACG 1 cut(s) 398
SinI GGWCC 1 cut(s) 441
SmlI CTYRAG 1 cut(s) 506
SmoI CTYRAG 1 cut(s) 506
Sse9I AATT 2 cut(s) 263, 451
SspMI CTAG 2 cut(s) 302, 516
SstI GAGCTC 1 cut(s) 507
StyD4I CCNGG 4 cut(s) 115, 209, 432, 464
StyI CCWWGG 1 cut(s) 186
TaaI ACNGT 7 cut(s) 109, 362, 404, 584, 671, 821, 934
TaiI ACGT 4 cut(s) 390, 617, 884, 894
TaqI TCGA 3 cut(s) 399, 477, 806
TaqII GACCGA 1 cut(s) 35
TasI AATT 2 cut(s) 263, 451
TatI WGTACW 3 cut(s) 102, 579, 821
TauI GCSGC 8 cut(s) 148, 219, 222, 291, 321, 577, 594, 917
Tru1I TTAA 4 cut(s) 11, 35, 53, 483
Tru9I TTAA 4 cut(s) 11, 35, 53, 483
TscAI CASTG 1 cut(s) 114
TseFI GTSAC 4 cut(s) 274, 362, 511, 928
TseI GCWGC 5 cut(s) 323, 571, 588, 917, 955
Tsp45I GTSAC 4 cut(s) 274, 362, 511, 928
TspDTI ATGAA 1 cut(s) 849
TspGWI ACGGA 4 cut(s) 540, 824, 864, 874
TspRI CASTG 1 cut(s) 114
VpaK11BI GGWCC 1 cut(s) 441
XapI RAATTY 1 cut(s) 263
XceI RCATGY 2 cut(s) 708, 908
XmiI GTMKAC 2 cut(s) 399, 477
XspI CTAG 2 cut(s) 302, 516
ZraI GACGTC 1 cut(s) 388
ZrmI AGTACT 1 cut(s) 581
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.