Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000003

Orthogroup ID

OG0012622

Physical Location & Seq

Genomic Coordinates Forward (+)

64989192 .. 64992328

Gene Structure 3137 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_3G00273080.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1188 bp

ATGGAGGATGAAGAAGACTGGGAAGATGAAGGTGATTTAGAACCTAAAGATGAGGATGAATACAAAGACAATAAGATGGGGAGACCTCCTGCTTCTTGTGACAAACTGATCAATGTGAAGAAGGGCACTTGGACTGAAGAGGAAGATGCAAATATACTTGCTCATCATGTATCCAAGAATGGGATCGGTAACTGGACTTCTGTTCCGAAAAAAGCAGGACTTAATAGATGTGGGAAGAGTTGCAAGCCTAGGTGGAGTAATTACTTGAGGGCTAATCTGAAGCATGAAACCTTCACACCCCAAGAGGAAGAATTGATTGTTAGGCTTCATGCAACCATTGGTAGCAGGTGGCCTATAATAGCTCAACAACTTCCTGGGAGGACAGACAATGATGTGAAGACCTACTGGAACACTAAGCTGAAAAAGAAGCTCTCAGATATGGGAATTGATCCCGTTACTCACAAGCCCTTCTCTCAAATTTTAGCCGACTATGGAAACATTGGTGGCCTACCCAAATCTGGAATGCGAATCGGGATAGGTGCTTCCCTAAACAAGGACTTGAAGAATGCAATGCTGATGAAGTCATCAGAACCATACACATCAGGCTTGTCAAACTTCAACAACAGCCATTTGGTGCCAACAACCAAAATCGAACCAATGCAAGCCACTAGCAGCACCAAATTCGACTACTACCAACCCTATGATCTTCTCACACAGCTGCAAGCCATGAAATATGTGACAGAGGTCTCTAACTCCACCACCAACACCAACACCAACCCTGCTCCTTCCCCTGTCAATTTCTACAGCGAAGGCTCATTATCTTCTTCATCCTCGTCCACATCTTCATCTGCTGCTGTGCAAGAGAAGTCACCTCTGGCCTTTGGATGGAGTGATTTTCTCCTAGAAGACGCACTTGTGCCAACTGAAGATGCTCGCGGAGCAATGCCACAAGGCGAAATTTGGGACCAAGCTACTATGCAAGATAATATGGCCGAGTCTTCATCCAAAGACATGTTTAACCAAGCACAAACAGAAAATGTGGGCATAAGTTATGGAATGTCAAGCAATCAAGTAGAGGCTATAGCTGATCCATGCGACAGTTCATTTGTGGAAGCCATGGTAGCTAAAGAGAATGACTTGTTCTTGGAGTTTCCTGAACTACTTCTGGAAGAACCATTCTACTACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000981 GO:0000988 GO:0000989 GO:0001067 GO:0001076 GO:0001134 GO:0001135 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006357 GO:0008150 GO:0009889 GO:0009987 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0030154 GO:0031323 GO:0031326 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044424 GO:0044464 GO:0048869 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-binding

Protein Analysis

395

Amino Acids

43.97

Weight (kDa)

4.74

Isoelectric Point (pI)

52.69

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Myb_DNA-binding	PF00249	41 - 89	2.1e-12	Myb-like DNA-binding domain
Myb_DNA-bind_6	PF13921	44 - 104	2.6e-08	Myb-like DNA-binding domain
Myb_DNA-binding	PF00249	97 - 138	3.6e-13	Myb-like DNA-binding domain
Myb_DNA-bind_6	PF13921	98 - 145	2.2e-07	Myb-like DNA-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012622)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g15900
malus_domestica	MD06G1184700.v1.1 MD14G1190600.v1.1
prunus_persica	Prupe.5G183500_v2.0.a1 Prupe.5G183500_v2.0.a1 Prupe.5G183500_v2.0.a1 Prupe.5G183500_v2.0.a1
rosa_chinensis	RchiOBHm_Chr7g0180151
rosa_laevigata	RLG00000005288
rosa_multiflora	Rmu_co8520481.1_g000001 Rmu_ssc0000119.1_g000038
rosa_roxburghii	Rroxscaffold_3G00273080
rosa_rugosa	Rorug06G0430800 Rorug06G0430900
rosa_samantha	Rh7AG031400 Rh7BG031500 Rh7CG033300 Rh7DG031900
rosa_wichuraiana	Rw7G002620

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	336
Acc36I	ACCTGC	1 cut(s)	336
AccB1I	GGYRCC	1 cut(s)	634
AccII	CGCG	1 cut(s)	936
AciI	CCGC	1 cut(s)	936
AclWI	GGATC	3 cut(s)	191, 443, 1082
AcoI	YGGCCR	1 cut(s)	990
AcsI	RAATTY	3 cut(s)	477, 680, 957
AcuI	CTGAAG	3 cut(s)	156, 299, 945
AfiI	CCNNNNNNNGG	4 cut(s)	180, 518, 553, 885
AflIII	ACRYGT	1 cut(s)	1011
AgsI	TTSAA	2 cut(s)	562, 619
AjnI	CCWGG	1 cut(s)	373
AluBI	AGCT	7 cut(s)	362, 418, 430, 718, 971, 1085, 1124
AluI	AGCT	7 cut(s)	362, 418, 430, 718, 971, 1085, 1124
Alw26I	GTCTC	2 cut(s)	76, 751
AlwI	GGATC	3 cut(s)	191, 443, 1082
AoxI	GGCC	4 cut(s)	350, 505, 876, 990
ApeKI	GCWGC	3 cut(s)	672, 718, 851
ApoI	RAATTY	3 cut(s)	477, 680, 957
ArsI	GACNNNNNNTTYG	2 cut(s)	1088, 1120
Asp700I	GAANNNNTTC	1 cut(s)	1161
AspA2I	CCTAGG	1 cut(s)	248
AspS9I	GGNCC	1 cut(s)	964
AsuHPI	GGTGA	2 cut(s)	44, 861
AvaII	GGWCC	1 cut(s)	964
AvrII	CCTAGG	1 cut(s)	248
BaeGI	GKGCMC	1 cut(s)	128
BanI	GGYRCC	1 cut(s)	634
BarI	GAAGNNNNNNTAC	2 cut(s)	181, 213
BbsI	GAAGAC	4 cut(s)	21, 404, 912, 990
BbvI	GCAGC	3 cut(s)	684, 705, 838
BccI	CCATC	2 cut(s)	70, 879
BcgI	CGANNNNNNTGC	2 cut(s)	664, 698
BciT130I	CCWGG	1 cut(s)	375
BciVI	GTATCC	1 cut(s)	181
BclI	TGATCA	1 cut(s)	108
BcoDI	GTCTC	2 cut(s)	76, 751
BfaI	CTAG	3 cut(s)	249, 669, 902
BfmI	CTRYAG	2 cut(s)	802, 1080
BfuAI	ACCTGC	1 cut(s)	336
BfuI	GTATCC	1 cut(s)	181
BisI	GCNGC	3 cut(s)	673, 719, 852
BlnI	CCTAGG	1 cut(s)	248
BlsI	GCNGC	3 cut(s)	674, 720, 853
Bme1390I	CCNGG	1 cut(s)	375
Bme18I	GGWCC	1 cut(s)	964
BmgT120I	GGNCC	1 cut(s)	964
BmiI	GGNNCC	2 cut(s)	636, 965
BmrFI	CCNGG	1 cut(s)	375
BmrI	ACTGGG	1 cut(s)	28
BmsI	GCATC	2 cut(s)	136, 919
BmuI	ACTGGG	1 cut(s)	28
BoxI	GACNNNNGTC	1 cut(s)	743
BpiI	GAAGAC	4 cut(s)	21, 404, 912, 990
BpuEI	CTTGAG	1 cut(s)	286
BsaI	GGTCTC	2 cut(s)	76, 751
BsaJI	CCNNGG	3 cut(s)	248, 374, 1116
Bsc4I	CCNNNNNNNGG	4 cut(s)	180, 518, 553, 885
Bse1I	ACTGG	3 cut(s)	23, 197, 410
Bse3DI	GCAATG	2 cut(s)	576, 948
BseBI	CCWGG	1 cut(s)	375
BseDI	CCNNGG	3 cut(s)	248, 374, 1116
BseGI	GGATG	5 cut(s)	13, 61, 827, 890, 1001
BseLI	CCNNNNNNNGG	4 cut(s)	180, 518, 553, 885
BseMI	GCAATG	2 cut(s)	576, 948
BseMII	CTCAG	1 cut(s)	447
BseNI	ACTGG	3 cut(s)	23, 197, 410
BseSI	GKGCMC	1 cut(s)	128
BseXI	GCAGC	3 cut(s)	684, 705, 838
Bsh1236I	CGCG	1 cut(s)	936
BshFI	GGCC	4 cut(s)	352, 507, 878, 992
BshNI	GGYRCC	1 cut(s)	634
BslFI	GGGAC	1 cut(s)	977
BslI	CCNNNNNNNGG	4 cut(s)	180, 518, 553, 885
BsmAI	GTCTC	2 cut(s)	76, 751
BsmFI	GGGAC	1 cut(s)	977
BsmI	GAATGC	2 cut(s)	528, 571
BsnI	GGCC	4 cut(s)	352, 507, 878, 992
Bso31I	GGTCTC	2 cut(s)	76, 751
Bsp1286I	GDGCHC	1 cut(s)	128
Bsp143I	GATC	5 cut(s)	108, 183, 448, 703, 1087
Bsp19I	CCATGG	1 cut(s)	1116
BspACI	CCGC	1 cut(s)	936
BspANI	GGCC	4 cut(s)	352, 507, 878, 992
BspCNI	CTCAG	1 cut(s)	446
BspFNI	CGCG	1 cut(s)	936
BspLI	GGNNCC	2 cut(s)	636, 965
BspMI	ACCTGC	1 cut(s)	336
BspPI	GGATC	3 cut(s)	191, 443, 1082
BspT107I	GGYRCC	1 cut(s)	634
BspTNI	GGTCTC	2 cut(s)	76, 751
BsrDI	GCAATG	2 cut(s)	576, 948
BsrI	ACTGG	3 cut(s)	23, 197, 410
BssECI	CCNNGG	3 cut(s)	248, 374, 1116
BssMI	GATC	5 cut(s)	108, 183, 448, 703, 1087
BssT1I	CCWWGG	2 cut(s)	248, 1116
Bst2UI	CCWGG	1 cut(s)	375
Bst4CI	ACNGT	1 cut(s)	1100
Bst6I	CTCTTC	2 cut(s)	132, 230
BstC8I	GCNNGC	4 cut(s)	245, 663, 723, 934
BstDEI	CTNAG	2 cut(s)	414, 433
BstDSI	CCRYGG	1 cut(s)	1116
BstENI	CCTNNNNNAGG	1 cut(s)	551
BstF5I	GGATG	5 cut(s)	13, 61, 827, 890, 1001
BstFNI	CGCG	1 cut(s)	936
BstKTI	GATC	5 cut(s)	111, 186, 451, 706, 1090
BstMAI	GTCTC	2 cut(s)	76, 751
BstMBI	GATC	5 cut(s)	108, 183, 448, 703, 1087
BstMWI	GCNNNNNNNGC	2 cut(s)	938, 1121
BstNI	CCWGG	1 cut(s)	375
BstNSI	RCATGY	1 cut(s)	1015
BstPAI	GACNNNNGTC	1 cut(s)	743
BstSCI	CCNGG	1 cut(s)	373
BstSFI	CTRYAG	2 cut(s)	802, 1080
BstSLI	GKGCMC	1 cut(s)	128
BstUI	CGCG	1 cut(s)	936
BstV1I	GCAGC	3 cut(s)	684, 705, 838
BstV2I	GAAGAC	4 cut(s)	21, 404, 912, 990
BsuI	GTATCC	1 cut(s)	181
BsuRI	GGCC	4 cut(s)	352, 507, 878, 992
BtgI	CCRYGG	1 cut(s)	1116
BtsCI	GGATG	5 cut(s)	13, 61, 827, 890, 1001
BveI	ACCTGC	1 cut(s)	336
Cac8I	GCNNGC	4 cut(s)	245, 663, 723, 934
Cfr13I	GGNCC	1 cut(s)	964
CseI	GACGC	1 cut(s)	917
CviAII	CATG	7 cut(s)	167, 284, 329, 727, 1012, 1092, 1117
DdeI	CTNAG	2 cut(s)	414, 433
DpnI	GATC	5 cut(s)	110, 185, 450, 705, 1089
DpnII	GATC	5 cut(s)	108, 183, 448, 703, 1087
EaeI	YGGCCR	1 cut(s)	990
Eam1104I	CTCTTC	2 cut(s)	132, 230
EarI	CTCTTC	2 cut(s)	132, 230
Eco130I	CCWWGG	2 cut(s)	248, 1116
Eco31I	GGTCTC	2 cut(s)	76, 751
Eco47I	GGWCC	1 cut(s)	964
Eco57I	CTGAAG	3 cut(s)	156, 299, 945
EcoNI	CCTNNNNNAGG	1 cut(s)	551
EcoRII	CCWGG	1 cut(s)	373
EcoT14I	CCWWGG	2 cut(s)	248, 1116
ErhI	CCWWGG	2 cut(s)	248, 1116
FaeI	CATG	7 cut(s)	170, 287, 332, 730, 1015, 1095, 1120
FalI	AAGNNNNNCTT	4 cut(s)	204, 236, 897, 929
FaqI	GGGAC	1 cut(s)	977
FatI	CATG	7 cut(s)	166, 283, 328, 726, 1011, 1091, 1116
FbaI	TGATCA	1 cut(s)	108
Fnu4HI	GCNGC	3 cut(s)	673, 719, 852
FokI	GGATG	5 cut(s)	20, 68, 814, 897, 988
Fsp4HI	GCNGC	3 cut(s)	673, 719, 852
FspBI	CTAG	3 cut(s)	249, 669, 902
GluI	GCNGC	3 cut(s)	673, 719, 852
HaeIII	GGCC	4 cut(s)	352, 507, 878, 992
HgaI	GACGC	1 cut(s)	917
Hin1II	CATG	7 cut(s)	170, 287, 332, 730, 1015, 1095, 1120
HinfI	GANTC	2 cut(s)	528, 995
HphI	GGTGA	2 cut(s)	44, 861
Hpy166II	GTNNAC	1 cut(s)	837
Hpy188I	TCNGA	4 cut(s)	207, 279, 436, 589
Hpy188III	TCNNGA	4 cut(s)	519, 532, 1154, 1166
Hpy8I	GTNNAC	1 cut(s)	837
HpyAV	CCTTC	6 cut(s)	23, 115, 301, 478, 795, 803
HpyCH4III	ACNGT	1 cut(s)	1100
HpyCH4V	TGCA	8 cut(s)	149, 243, 332, 569, 661, 721, 859, 979
HpyF10VI	GCNNNNNNNGC	2 cut(s)	938, 1121
HpyF3I	CTNAG	2 cut(s)	414, 433
Hsp92II	CATG	7 cut(s)	170, 287, 332, 730, 1015, 1095, 1120
Ksp22I	TGATCA	1 cut(s)	108
Kzo9I	GATC	5 cut(s)	108, 183, 448, 703, 1087
LmnI	GCTCC	2 cut(s)	787, 938
Lsp1109I	GCAGC	3 cut(s)	684, 705, 838
LweI	GCATC	2 cut(s)	136, 919
MaeI	CTAG	3 cut(s)	249, 669, 902
MaeIII	GTNAC	5 cut(s)	98, 188, 454, 736, 867
MalI	GATC	5 cut(s)	110, 185, 450, 705, 1089
MboI	GATC	5 cut(s)	108, 183, 448, 703, 1087
MhlI	GDGCHC	1 cut(s)	128
MluCI	AATT	7 cut(s)	259, 311, 444, 477, 680, 796, 957
MlyI	GAGTC	1 cut(s)	1004
MroXI	GAANNNNTTC	1 cut(s)	1161
MseI	TTAA	2 cut(s)	222, 1017
MspA1I	CMGCKG	1 cut(s)	718
MspR9I	CCNGG	1 cut(s)	375
Mva1269I	GAATGC	2 cut(s)	528, 571
MvaI	CCWGG	1 cut(s)	375
MvnI	CGCG	1 cut(s)	936
MwoI	GCNNNNNNNGC	2 cut(s)	938, 1121
NcoI	CCATGG	1 cut(s)	1116
NdeII	GATC	5 cut(s)	108, 183, 448, 703, 1087
NlaIII	CATG	7 cut(s)	170, 287, 332, 730, 1015, 1095, 1120
NlaIV	GGNNCC	2 cut(s)	636, 965
NmeAIII	GCCGAG	1 cut(s)	1018
NmuCI	GTSAC	3 cut(s)	98, 736, 867
NspI	RCATGY	1 cut(s)	1015
PaqCI	CACCTGC	1 cut(s)	336
PciI	ACATGT	1 cut(s)	1011
PctI	GAATGC	2 cut(s)	528, 571
PdmI	GAANNNNTTC	1 cut(s)	1161
PfeI	GAWTC	1 cut(s)	528
PkrI	GCNGC	3 cut(s)	674, 720, 853
PleI	GAGTC	1 cut(s)	1003
PpsI	GAGTC	1 cut(s)	1003
PscI	ACATGT	1 cut(s)	1011
PshAI	GACNNNNGTC	1 cut(s)	743
Psp6I	CCWGG	1 cut(s)	373
PspGI	CCWGG	1 cut(s)	373
PspN4I	GGNNCC	2 cut(s)	636, 965
PspPI	GGNCC	1 cut(s)	964
PvuII	CAGCTG	1 cut(s)	718
SaqAI	TTAA	2 cut(s)	222, 1017
SatI	GCNGC	3 cut(s)	673, 719, 852
Sau3AI	GATC	5 cut(s)	108, 183, 448, 703, 1087
Sau96I	GGNCC	1 cut(s)	964
SchI	GAGTC	1 cut(s)	1004
ScrFI	CCNGG	1 cut(s)	375
SduI	GDGCHC	1 cut(s)	128
SfaNI	GCATC	2 cut(s)	136, 919
SfcI	CTRYAG	2 cut(s)	802, 1080
SinI	GGWCC	1 cut(s)	964
SmlI	CTYRAG	1 cut(s)	265
SmoI	CTYRAG	1 cut(s)	265
Sse9I	AATT	7 cut(s)	259, 311, 444, 477, 680, 796, 957
SsiI	CCGC	1 cut(s)	936
SspMI	CTAG	3 cut(s)	249, 669, 902
StyD4I	CCNGG	1 cut(s)	373
StyI	CCWWGG	2 cut(s)	248, 1116
TaaI	ACNGT	1 cut(s)	1100
TaqI	TCGA	2 cut(s)	651, 684
TasI	AATT	7 cut(s)	259, 311, 444, 477, 680, 796, 957
TfiI	GAWTC	1 cut(s)	528
Tru1I	TTAA	2 cut(s)	222, 1017
Tru9I	TTAA	2 cut(s)	222, 1017
TseFI	GTSAC	3 cut(s)	98, 736, 867
TseI	GCWGC	3 cut(s)	672, 718, 851
Tsp45I	GTSAC	3 cut(s)	98, 736, 867
VpaK11BI	GGWCC	1 cut(s)	964
XagI	CCTNNNNNAGG	1 cut(s)	551
XapI	RAATTY	3 cut(s)	477, 680, 957
XceI	RCATGY	1 cut(s)	1015
XmaJI	CCTAGG	1 cut(s)	248
XmnI	GAANNNNTTC	1 cut(s)	1161
XspI	CTAG	3 cut(s)	249, 669, 902

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.