Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr14

Orthogroup ID

OG0012622

Physical Location & Seq

Genomic Coordinates Reverse (-)

28166539 .. 28168015

Gene Structure 1477 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD14G1190600.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1074 bp

ATGGTGAGACCTGCTTGTGGTGACAAGCTGCATGTGAAAAGGGGCACTCTTTTGACTGCGGAGGAAGATGCAAAGATACTTGCGCATGTGTCGAAGTATGGACCGAGTAACTGGACTTCTGTTCCCAAAAAAACAGGAGTTACAAGATGTGGAAAGAGCTGCAAGCTAAGGTGGACTAATCACCTCAAGTCTAATCTGAAGCATGAATCCTTCACGCCTCATGAGGAGGAATTGATTGTCAGGCTTCATGCCACAATTGGTAGCAGATGGCCAACAATAGCTCAACACCTTCCTGGGAGGACAGACAATGATGTAAAGAACTACTGGAACACTAAGCTGAAGAAGAAGCTCTCAGAAATGGGAATTGATCATGTTACTCATAAGCCCTTCTCTCAAATCTTAGCGGATTATGGAAACATCGGTGGCGTCCAGAAAGTTGGAATGAGAATCGGGATAAGTTCTCTCAACAAGGACTTGAGGAACGCAATGCGGATGAAGCCAGCAGAGCCATACTCATTGCCAGCACAAGGGTTTTCCAACATCAACAGCCATTTGATGCCAATTACAATGATACCAACCAAAGCGGAGCCAATTCTAGACAGTTTCTTGGGCCACACTCAACCTGGCAGCCAACCCCCGGATCTTCTCACACAGCTTGAGGCCATAAATTTGGTGACAGAAGCCTTCAAATCCACCGAATCCCAATCTTCTGCACCAAATTTTTACAGTCACGAAGGAACATTGTCATCATCGTCTTCTACTTCATCTGCAACACAAGAGCAGGCAACCCTGCAGGCATTTAGCTGGAGCGATTTTCTCCTTGAAGACGCGTTTATGCCAATTGGTGACGCCCAAGAACACGAAAACAAGGCTGAGTATTCATCGAATTCGAAGGACCAAGCACAAGTAGCAATACAACAAAGCCAAATCGACATGGATTATGCAATCTCAGTAAATGAAGTTGAAGCTACATCGGCGGCATGTGACAGTTCGTTTGTGGAAGCCATGGTAGCTAGAGAGAATAAGATGTTCTTGGAGTTTCCTGAACTCATGGAAGAACCATTCTACTATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000981 GO:0000988 GO:0000989 GO:0001067 GO:0001076 GO:0001134 GO:0001135 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006357 GO:0008150 GO:0009889 GO:0009987 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0030154 GO:0031323 GO:0031326 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044424 GO:0044464 GO:0048869 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-binding

Protein Analysis

358

Amino Acids

39.71

Weight (kDa)

6.02

Isoelectric Point (pI)

52.74

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Myb_DNA-binding	PF00249	19 - 62	7e-13	Myb-like DNA-binding domain
Myb_DNA-bind_6	PF13921	19 - 77	4.7e-09	Myb-like DNA-binding domain
Myb_DNA-binding	PF00249	69 - 111	1.3e-14	Myb-like DNA-binding domain
Myb_DNA-bind_6	PF13921	71 - 118	4.9e-08	Myb-like DNA-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012622)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g15900
malus_domestica	MD06G1184700.v1.1 MD14G1190600.v1.1
prunus_persica	Prupe.5G183500_v2.0.a1 Prupe.5G183500_v2.0.a1 Prupe.5G183500_v2.0.a1 Prupe.5G183500_v2.0.a1
rosa_chinensis	RchiOBHm_Chr7g0180151
rosa_laevigata	RLG00000005288
rosa_multiflora	Rmu_co8520481.1_g000001 Rmu_ssc0000119.1_g000038
rosa_roxburghii	Rroxscaffold_3G00273080
rosa_rugosa	Rorug06G0430800 Rorug06G0430900
rosa_samantha	Rh7AG031400 Rh7BG031500 Rh7CG033300 Rh7DG031900
rosa_wichuraiana	Rw7G002620

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	84
Acc36I	ACCTGC	1 cut(s)	19
AccII	CGCG	1 cut(s)	830
AciI	CCGC	5 cut(s)	59, 404, 490, 584, 977
AclWI	GGATC	1 cut(s)	648
AcoI	YGGCCR	1 cut(s)	269
AcsI	RAATTY	3 cut(s)	667, 718, 886
AcuI	CTGAAG	2 cut(s)	218, 359
AcyI	GRCGYC	2 cut(s)	426, 849
AfiI	CCNNNNNNNGG	3 cut(s)	17, 527, 637
AflIII	ACRYGT	1 cut(s)	828
AgsI	TTSAA	3 cut(s)	688, 824, 965
AjnI	CCWGG	2 cut(s)	292, 622
AlwI	GGATC	1 cut(s)	648
AoxI	GGCC	3 cut(s)	269, 610, 660
ApeKI	GCWGC	3 cut(s)	28, 159, 627
ApoI	RAATTY	3 cut(s)	667, 718, 886
ArsI	GACNNNNNNTTYG	2 cut(s)	977, 1009
AspLEI	GCGC	1 cut(s)	85
AspS9I	GGNCC	3 cut(s)	101, 610, 895
AsuC2I	CCSGG	1 cut(s)	638
AsuHPI	GGTGA	5 cut(s)	16, 32, 173, 685, 857
AsuII	TTCGAA	1 cut(s)	890
AvaII	GGWCC	2 cut(s)	101, 895
BaeGI	GKGCMC	1 cut(s)	47
BalI	TGGCCA	1 cut(s)	271
BarI	GAAGNNNNNNTAC	2 cut(s)	100, 132
BbsI	GAAGAC	2 cut(s)	747, 831
BbvI	GCAGC	3 cut(s)	15, 146, 639
BccI	CCATC	1 cut(s)	261
BciT130I	CCWGG	2 cut(s)	294, 624
BclI	TGATCA	1 cut(s)	367
BcnI	CCSGG	1 cut(s)	638
BfaI	CTAG	2 cut(s)	596, 1014
BfmI	CTRYAG	1 cut(s)	791
BfuAI	ACCTGC	1 cut(s)	19
BisI	GCNGC	4 cut(s)	29, 160, 628, 978
BlsI	GCNGC	4 cut(s)	30, 161, 629, 979
Bme1390I	CCNGG	3 cut(s)	294, 624, 638
Bme18I	GGWCC	2 cut(s)	101, 895
BmgT120I	GGNCC	3 cut(s)	101, 610, 895
BmiI	GGNNCC	1 cut(s)	588
BmrFI	CCNGG	3 cut(s)	294, 624, 638
BmsI	GCATC	2 cut(s)	58, 546
BpiI	GAAGAC	2 cut(s)	747, 831
BplI	GAGNNNNNCTC	2 cut(s)	497, 529
BpmI	CTGGAG	1 cut(s)	826
Bpu10I	CCTNAGC	1 cut(s)	167
Bpu14I	TTCGAA	1 cut(s)	890
BpuEI	CTTGAG	3 cut(s)	170, 496, 677
BpuMI	CCSGG	1 cut(s)	638
BsaHI	GRCGYC	2 cut(s)	426, 849
BsaJI	CCNNGG	3 cut(s)	293, 636, 1005
Bsc4I	CCNNNNNNNGG	3 cut(s)	17, 527, 637
Bse1I	ACTGG	2 cut(s)	116, 329
Bse3DI	GCAATG	2 cut(s)	492, 515
BseBI	CCWGG	2 cut(s)	294, 624
BseDI	CCNNGG	3 cut(s)	293, 636, 1005
BseGI	GGATG	1 cut(s)	498
BseLI	CCNNNNNNNGG	3 cut(s)	17, 527, 637
BseMI	GCAATG	2 cut(s)	492, 515
BseMII	CTCAG	3 cut(s)	366, 864, 963
BseNI	ACTGG	2 cut(s)	116, 329
BseRI	GAGGAG	1 cut(s)	239
BseSI	GKGCMC	1 cut(s)	47
BseXI	GCAGC	3 cut(s)	15, 146, 639
BsgI	GTGCAG	1 cut(s)	696
Bsh1236I	CGCG	1 cut(s)	830
BshFI	GGCC	3 cut(s)	271, 612, 662
BsiSI	CCGG	1 cut(s)	638
BslI	CCNNNNNNNGG	3 cut(s)	17, 527, 637
BsnI	GGCC	3 cut(s)	271, 612, 662
Bsp119I	TTCGAA	1 cut(s)	890
Bsp1286I	GDGCHC	1 cut(s)	47
Bsp143I	GATC	2 cut(s)	367, 640
Bsp19I	CCATGG	1 cut(s)	1005
BspACI	CCGC	5 cut(s)	59, 404, 490, 584, 977
BspANI	GGCC	3 cut(s)	271, 612, 662
BspCNI	CTCAG	3 cut(s)	365, 865, 962
BspFNI	CGCG	1 cut(s)	830
BspHI	TCATGA	1 cut(s)	220
BspLI	GGNNCC	1 cut(s)	588
BspMAI	CTGCAG	1 cut(s)	795
BspMI	ACCTGC	1 cut(s)	19
BspPI	GGATC	1 cut(s)	648
BspT104I	TTCGAA	1 cut(s)	890
BsrDI	GCAATG	2 cut(s)	492, 515
BsrI	ACTGG	2 cut(s)	116, 329
BssECI	CCNNGG	3 cut(s)	293, 636, 1005
BssMI	GATC	2 cut(s)	367, 640
BssNI	GRCGYC	2 cut(s)	426, 849
BssT1I	CCWWGG	1 cut(s)	1005
Bst2UI	CCWGG	2 cut(s)	294, 624
Bst4CI	ACNGT	3 cut(s)	602, 728, 989
BstACI	GRCGYC	2 cut(s)	426, 849
BstBI	TTCGAA	1 cut(s)	890
BstC8I	GCNNGC	5 cut(s)	164, 501, 522, 783, 795
BstDEI	CTNAG	6 cut(s)	167, 333, 352, 400, 873, 949
BstDSI	CCRYGG	1 cut(s)	1005
BstF5I	GGATG	1 cut(s)	498
BstFNI	CGCG	1 cut(s)	830
BstHHI	GCGC	1 cut(s)	85
BstKTI	GATC	2 cut(s)	370, 643
BstMBI	GATC	2 cut(s)	367, 640
BstMWI	GCNNNNNNNGC	5 cut(s)	496, 505, 908, 974, 1010
BstNI	CCWGG	2 cut(s)	294, 624
BstNSI	RCATGY	3 cut(s)	35, 89, 984
BstSCI	CCNGG	3 cut(s)	292, 622, 636
BstSFI	CTRYAG	1 cut(s)	791
BstSLI	GKGCMC	1 cut(s)	47
BstUI	CGCG	1 cut(s)	830
BstV1I	GCAGC	3 cut(s)	15, 146, 639
BstV2I	GAAGAC	2 cut(s)	747, 831
BstX2I	RGATCY	1 cut(s)	640
BstXI	CCANNNNNNTGG	2 cut(s)	437, 670
BstYI	RGATCY	1 cut(s)	640
BsuRI	GGCC	3 cut(s)	271, 612, 662
BtgI	CCRYGG	1 cut(s)	1005
BtsCI	GGATG	1 cut(s)	498
BveI	ACCTGC	1 cut(s)	19
Cac8I	GCNNGC	5 cut(s)	164, 501, 522, 783, 795
CciI	TCATGA	1 cut(s)	220
CfoI	GCGC	1 cut(s)	85
Cfr13I	GGNCC	3 cut(s)	101, 610, 895
CseI	GACGC	3 cut(s)	415, 836, 857
DdeI	CTNAG	6 cut(s)	167, 333, 352, 400, 873, 949
DpnI	GATC	2 cut(s)	369, 642
DpnII	GATC	2 cut(s)	367, 640
EaeI	YGGCCR	1 cut(s)	269
Eco130I	CCWWGG	1 cut(s)	1005
Eco47I	GGWCC	2 cut(s)	101, 895
Eco57I	CTGAAG	2 cut(s)	218, 359
EcoRI	GAATTC	1 cut(s)	886
EcoRII	CCWGG	2 cut(s)	292, 622
EcoT14I	CCWWGG	1 cut(s)	1005
ErhI	CCWWGG	1 cut(s)	1005
FalI	AAGNNNNNCTT	2 cut(s)	1016, 1048
FbaI	TGATCA	1 cut(s)	367
Fnu4HI	GCNGC	4 cut(s)	29, 160, 628, 978
FokI	GGATG	1 cut(s)	505
Fsp4HI	GCNGC	4 cut(s)	29, 160, 628, 978
FspBI	CTAG	2 cut(s)	596, 1014
FspI	TGCGCA	1 cut(s)	84
GlaI	GCGC	1 cut(s)	84
GluI	GCNGC	4 cut(s)	29, 160, 628, 978
GsuI	CTGGAG	1 cut(s)	826
HaeIII	GGCC	3 cut(s)	271, 612, 662
HapII	CCGG	1 cut(s)	638
HgaI	GACGC	3 cut(s)	415, 836, 857
HhaI	GCGC	1 cut(s)	85
Hin1I	GRCGYC	2 cut(s)	426, 849
Hin6I	GCGC	1 cut(s)	83
HinP1I	GCGC	1 cut(s)	83
HinfI	GANTC	3 cut(s)	206, 447, 698
HpaII	CCGG	1 cut(s)	638
HphI	GGTGA	5 cut(s)	16, 32, 173, 685, 857
Hpy166II	GTNNAC	1 cut(s)	174
Hpy188I	TCNGA	2 cut(s)	198, 355
Hpy188III	TCNNGA	6 cut(s)	221, 430, 451, 596, 731, 1043
Hpy8I	GTNNAC	1 cut(s)	174
HpyAV	CCTTC	6 cut(s)	220, 299, 397, 694, 728, 886
HpyCH4III	ACNGT	3 cut(s)	602, 728, 989
HpyCH4V	TGCA	7 cut(s)	31, 71, 162, 713, 770, 793, 944
HpyF10VI	GCNNNNNNNGC	5 cut(s)	496, 505, 908, 974, 1010
HpyF3I	CTNAG	6 cut(s)	167, 333, 352, 400, 873, 949
Hsp92I	GRCGYC	2 cut(s)	426, 849
HspAI	GCGC	1 cut(s)	83
Ksp22I	TGATCA	1 cut(s)	367
Kzo9I	GATC	2 cut(s)	367, 640
LmnI	GCTCC	2 cut(s)	586, 807
Lsp1109I	GCAGC	3 cut(s)	15, 146, 639
LweI	GCATC	2 cut(s)	58, 546
MaeI	CTAG	2 cut(s)	596, 1014
MaeIII	GTNAC	8 cut(s)	20, 107, 139, 373, 673, 728, 845, 983
MalI	GATC	2 cut(s)	369, 642
MboI	GATC	2 cut(s)	367, 640
MboII	GAAGA	8 cut(s)	77, 352, 355, 635, 699, 747, 836, 1067
MfeI	CAATTG	2 cut(s)	255, 840
MflI	RGATCY	1 cut(s)	640
MhlI	GDGCHC	1 cut(s)	47
MlsI	TGGCCA	1 cut(s)	271
MluCI	AATT	9 cut(s)	230, 255, 363, 561, 591, 667, 718, 840, 886
MluI	ACGCGT	1 cut(s)	828
MluNI	TGGCCA	1 cut(s)	271
MmeI	TCCRAC	2 cut(s)	418, 561
MnlI	CCTC	8 cut(s)	55, 194, 217, 220, 228, 291, 471, 652
Mox20I	TGGCCA	1 cut(s)	271
MscI	TGGCCA	1 cut(s)	271
Msp20I	TGGCCA	1 cut(s)	271
MspI	CCGG	1 cut(s)	638
MspR9I	CCNGG	3 cut(s)	294, 624, 638
MunI	CAATTG	2 cut(s)	255, 840
MvaI	CCWGG	2 cut(s)	294, 624
MvnI	CGCG	1 cut(s)	830
MwoI	GCNNNNNNNGC	5 cut(s)	496, 505, 908, 974, 1010
NciI	CCSGG	1 cut(s)	638
NcoI	CCATGG	1 cut(s)	1005
NdeII	GATC	2 cut(s)	367, 640
NlaIV	GGNNCC	1 cut(s)	588
NmuCI	GTSAC	5 cut(s)	20, 673, 728, 845, 983
NsbI	TGCGCA	1 cut(s)	84
NspI	RCATGY	3 cut(s)	35, 89, 984
NspV	TTCGAA	1 cut(s)	890
PagI	TCATGA	1 cut(s)	220
PfeI	GAWTC	3 cut(s)	206, 447, 698
PkrI	GCNGC	4 cut(s)	30, 161, 629, 979
Psp6I	CCWGG	2 cut(s)	292, 622
PspGI	CCWGG	2 cut(s)	292, 622
PspN4I	GGNNCC	1 cut(s)	588
PspPI	GGNCC	3 cut(s)	101, 610, 895
PstI	CTGCAG	1 cut(s)	795
PsuI	RGATCY	1 cut(s)	640
SatI	GCNGC	4 cut(s)	29, 160, 628, 978
Sau3AI	GATC	2 cut(s)	367, 640
Sau96I	GGNCC	3 cut(s)	101, 610, 895
SbfI	CCTGCAGG	1 cut(s)	795
ScrFI	CCNGG	3 cut(s)	294, 624, 638
SdaI	CCTGCAGG	1 cut(s)	795
SduI	GDGCHC	1 cut(s)	47
SfaNI	GCATC	2 cut(s)	58, 546
SfcI	CTRYAG	1 cut(s)	791
SfuI	TTCGAA	1 cut(s)	890
SinI	GGWCC	2 cut(s)	101, 895
SmlI	CTYRAG	3 cut(s)	185, 475, 656
SmoI	CTYRAG	3 cut(s)	185, 475, 656
Sse8387I	CCTGCAGG	1 cut(s)	795
Sse9I	AATT	9 cut(s)	230, 255, 363, 561, 591, 667, 718, 840, 886
SsiI	CCGC	5 cut(s)	59, 404, 490, 584, 977
SspMI	CTAG	2 cut(s)	596, 1014
StyD4I	CCNGG	3 cut(s)	292, 622, 636
StyI	CCWWGG	1 cut(s)	1005
TaaI	ACNGT	3 cut(s)	602, 728, 989
TaqI	TCGA	4 cut(s)	92, 884, 890, 930
TaqII	GACCGA	1 cut(s)	118
TasI	AATT	9 cut(s)	230, 255, 363, 561, 591, 667, 718, 840, 886
TauI	GCSGC	1 cut(s)	980
TfiI	GAWTC	3 cut(s)	206, 447, 698
TseFI	GTSAC	5 cut(s)	20, 673, 728, 845, 983
TseI	GCWGC	3 cut(s)	28, 159, 627
Tsp45I	GTSAC	5 cut(s)	20, 673, 728, 845, 983
TspDTI	ATGAA	6 cut(s)	219, 236, 509, 753, 870, 972
VpaK11BI	GGWCC	2 cut(s)	101, 895
XapI	RAATTY	3 cut(s)	667, 718, 886
XbaI	TCTAGA	1 cut(s)	595
XceI	RCATGY	3 cut(s)	35, 89, 984
XcmI	CCANNNNNNNNNTGG	1 cut(s)	620
XspI	CTAG	2 cut(s)	596, 1014

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.