Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr06

Orthogroup ID

OG0012622

Physical Location & Seq

Genomic Coordinates Reverse (-)

32272952 .. 32274425

Gene Structure 1474 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD06G1184700.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1017 bp

ATGGTGAGACCTGCTTGTTGTGACAAGCTGCATGTGTCGAAGCATGGGAGGAGTAACTGGACTTCTGTTCCGAAAAAACCAGGAATTACAAGATGTGGGAAGAGCAGCAGGCTTAGGTGGCCTAATCACCTCAAGCCTAATCTGAAGCATGAGTCCTTCACACCCCATGAGGAGGAATTGATTGTCAGGCTTCATGCCACCATAGGTAGCAGATGGCCTGCAATAGCTCAACAGCTTCCTGGGAGGACAGACAATGATGTAAAGAACTACTGGAATACTAAGCTGAAGAAGAAGCTCTCAGAAATGGGAATTGATCCTGTTACTCATAAGCCCTTCTCTCAAGTCTTAGCGGATTATGGAAACATCGGTGGCCTTCCGAAAGTTGGCATGAGAATCGGGATAGGTTCTCTCAACAAAGACTTGAAGAACGCAATGCTGATGGAACCAGCAGAGCCATACTTATTAACAGCACAAGGGTTTTCCAACATCAACAGCCATTTGATGCCAATTACAATGATACCGACCAAAGAGGAGCCAATTCTAGACAGTTTCTTGGGCCACAATCAACCTAGCAGCCAACCCCCAGACCTTCTCACACAGCTGCAGGCCATAAAATTGGTGACAGAAGCCTCAAAATCCACAGAATTCCAATCTTCTGCGCCAAATTTTTACAGTCACGAAGGCATATTGTCATCACCATCTTCTACTTCTTCATCTGCCGCTCAAGAGCAGGCAACCCTGCAGACGTTTAGCTGGAGCGATTTTCTCCTTGAAGACGCGTTTATGCCAATTGGTGACGCCCAAGAACACAAAAACAAGGGTGAGTATTCATCGAAGAACATAGCACAAGTAGCAGTACAACAAAGCCAAATCGACATGGATTATGCAATCTCAAGCAATGAAGTAGAGGCTACGTCTCCAGCGTGCGACAGTTCGTTTGTGGAAGCCATGGTATCTCTAGAGAATGAGATGTTCTTGGAGTTTCCTGAACTAATGGAAGAACCATTCTACTACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000981 GO:0000988 GO:0000989 GO:0001067 GO:0001076 GO:0001134 GO:0001135 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006357 GO:0008150 GO:0009889 GO:0009987 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0030154 GO:0031323 GO:0031326 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044424 GO:0044464 GO:0048869 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-binding

Protein Analysis

339

Amino Acids

37.65

Weight (kDa)

5.79

Isoelectric Point (pI)

62.69

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Myb_DNA-binding	PF00249	51 - 93	5e-14	Myb-like DNA-binding domain
Myb_DNA-bind_6	PF13921	53 - 100	1.3e-07	Myb-like DNA-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012622)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g15900
malus_domestica	MD06G1184700.v1.1 MD14G1190600.v1.1
prunus_persica	Prupe.5G183500_v2.0.a1 Prupe.5G183500_v2.0.a1 Prupe.5G183500_v2.0.a1 Prupe.5G183500_v2.0.a1
rosa_chinensis	RchiOBHm_Chr7g0180151
rosa_laevigata	RLG00000005288
rosa_multiflora	Rmu_co8520481.1_g000001 Rmu_ssc0000119.1_g000038
rosa_roxburghii	Rroxscaffold_3G00273080
rosa_rugosa	Rorug06G0430800 Rorug06G0430900
rosa_samantha	Rh7AG031400 Rh7BG031500 Rh7CG033300 Rh7DG031900
rosa_wichuraiana	Rw7G002620

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	19
AccBSI	CCGCTC	1 cut(s)	722
AccII	CGCG	1 cut(s)	779
AciI	CCGC	2 cut(s)	350, 720
AclWI	GGATC	1 cut(s)	308
AcsI	RAATTY	2 cut(s)	644, 664
AcuI	CTGAAG	2 cut(s)	164, 305
AcyI	GRCGYC	1 cut(s)	798
AfaI	GTAC	1 cut(s)	858
AfiI	CCNNNNNNNGG	2 cut(s)	172, 383
AflIII	ACRYGT	1 cut(s)	777
AgsI	TTSAA	2 cut(s)	424, 773
AjnI	CCWGG	2 cut(s)	79, 238
AluBI	AGCT	7 cut(s)	28, 227, 235, 283, 295, 601, 753
AluI	AGCT	7 cut(s)	28, 227, 235, 283, 295, 601, 753
Alw26I	GTCTC	1 cut(s)	921
AlwI	GGATC	1 cut(s)	308
AoxI	GGCC	5 cut(s)	119, 215, 370, 556, 606
ApeKI	GCWGC	4 cut(s)	28, 105, 573, 601
ApoI	RAATTY	2 cut(s)	644, 664
ArsI	GACNNNNNNTTYG	2 cut(s)	920, 952
AspLEI	GCGC	1 cut(s)	661
AspS9I	GGNCC	1 cut(s)	556
AsuHPI	GGTGA	6 cut(s)	16, 119, 631, 687, 806, 833
BarI	GAAGNNNNNNTAC	2 cut(s)	46, 78
BbsI	GAAGAC	1 cut(s)	780
BbvI	GCAGC	4 cut(s)	15, 117, 585, 588
BccI	CCATC	3 cut(s)	207, 433, 706
BcgI	CGANNNNNNTGC	2 cut(s)	376, 410
BciT130I	CCWGG	2 cut(s)	81, 240
BcoDI	GTCTC	1 cut(s)	921
BfaI	CTAG	3 cut(s)	542, 570, 959
BfmI	CTRYAG	2 cut(s)	602, 740
BfuAI	ACCTGC	1 cut(s)	19
BisI	GCNGC	5 cut(s)	29, 106, 574, 602, 720
BlsI	GCNGC	5 cut(s)	30, 107, 575, 603, 721
Bme1390I	CCNGG	2 cut(s)	81, 240
BmgT120I	GGNCC	1 cut(s)	556
BmiI	GGNNCC	2 cut(s)	444, 534
BmrFI	CCNGG	2 cut(s)	81, 240
BmsI	GCATC	1 cut(s)	492
BpiI	GAAGAC	1 cut(s)	780
BpmI	CTGGAG	2 cut(s)	775, 903
Bpu10I	CCTNAGC	1 cut(s)	113
BpuEI	CTTGAG	4 cut(s)	116, 324, 708, 877
BsaHI	GRCGYC	1 cut(s)	798
BsaJI	CCNNGG	2 cut(s)	239, 948
Bsc4I	CCNNNNNNNGG	2 cut(s)	172, 383
Bse1I	ACTGG	2 cut(s)	62, 275
Bse3DI	GCAATG	2 cut(s)	438, 904
BseBI	CCWGG	2 cut(s)	81, 240
BseDI	CCNNGG	2 cut(s)	239, 948
BseLI	CCNNNNNNNGG	2 cut(s)	172, 383
BseMI	GCAATG	2 cut(s)	438, 904
BseMII	CTCAG	1 cut(s)	312
BseNI	ACTGG	2 cut(s)	62, 275
BseRI	GAGGAG	3 cut(s)	64, 185, 545
BseXI	GCAGC	4 cut(s)	15, 117, 585, 588
Bsh1236I	CGCG	1 cut(s)	779
BshFI	GGCC	5 cut(s)	121, 217, 372, 558, 608
BslI	CCNNNNNNNGG	2 cut(s)	172, 383
BsmAI	GTCTC	1 cut(s)	921
BsmBI	CGTCTC	1 cut(s)	921
BsnI	GGCC	5 cut(s)	121, 217, 372, 558, 608
Bsp143I	GATC	1 cut(s)	313
Bsp19I	CCATGG	1 cut(s)	948
BspACI	CCGC	2 cut(s)	350, 720
BspANI	GGCC	5 cut(s)	121, 217, 372, 558, 608
BspCNI	CTCAG	1 cut(s)	311
BspFNI	CGCG	1 cut(s)	779
BspLI	GGNNCC	2 cut(s)	444, 534
BspMAI	CTGCAG	2 cut(s)	606, 744
BspMI	ACCTGC	1 cut(s)	19
BspPI	GGATC	1 cut(s)	308
BspQI	GCTCTTC	1 cut(s)	95
BsrBI	CCGCTC	1 cut(s)	722
BsrDI	GCAATG	2 cut(s)	438, 904
BsrI	ACTGG	2 cut(s)	62, 275
BssECI	CCNNGG	2 cut(s)	239, 948
BssMI	GATC	1 cut(s)	313
BssNI	GRCGYC	1 cut(s)	798
BssT1I	CCWWGG	1 cut(s)	948
Bst2UI	CCWGG	2 cut(s)	81, 240
Bst4CI	ACNGT	3 cut(s)	548, 674, 932
Bst6I	CTCTTC	1 cut(s)	95
BstACI	GRCGYC	1 cut(s)	798
BstC8I	GCNNGC	5 cut(s)	110, 219, 606, 732, 925
BstDEI	CTNAG	4 cut(s)	113, 279, 298, 346
BstDSI	CCRYGG	1 cut(s)	948
BstFNI	CGCG	1 cut(s)	779
BstHHI	GCGC	1 cut(s)	661
BstKTI	GATC	1 cut(s)	316
BstMAI	GTCTC	1 cut(s)	921
BstMBI	GATC	1 cut(s)	313
BstMWI	GCNNNNNNNGC	2 cut(s)	118, 851
BstNI	CCWGG	2 cut(s)	81, 240
BstNSI	RCATGY	1 cut(s)	35
BstSCI	CCNGG	2 cut(s)	79, 238
BstSFI	CTRYAG	2 cut(s)	602, 740
BstUI	CGCG	1 cut(s)	779
BstV1I	GCAGC	4 cut(s)	15, 117, 585, 588
BstV2I	GAAGAC	1 cut(s)	780
BstXI	CCANNNNNNTGG	1 cut(s)	616
BsuRI	GGCC	5 cut(s)	121, 217, 372, 558, 608
BtgI	CCRYGG	1 cut(s)	948
BveI	ACCTGC	1 cut(s)	19
Cac8I	GCNNGC	5 cut(s)	110, 219, 606, 732, 925
CfoI	GCGC	1 cut(s)	661
Cfr13I	GGNCC	1 cut(s)	556
CseI	GACGC	2 cut(s)	785, 806
Csp6I	GTAC	1 cut(s)	857
CviAII	CATG	8 cut(s)	32, 44, 149, 167, 194, 388, 877, 949
CviQI	GTAC	1 cut(s)	857
DdeI	CTNAG	4 cut(s)	113, 279, 298, 346
DpnI	GATC	1 cut(s)	315
DpnII	GATC	1 cut(s)	313
Eam1104I	CTCTTC	1 cut(s)	95
EarI	CTCTTC	1 cut(s)	95
Eco130I	CCWWGG	1 cut(s)	948
Eco57I	CTGAAG	2 cut(s)	164, 305
EcoRI	GAATTC	1 cut(s)	644
EcoRII	CCWGG	2 cut(s)	79, 238
EcoT14I	CCWWGG	1 cut(s)	948
ErhI	CCWWGG	1 cut(s)	948
Esp3I	CGTCTC	1 cut(s)	921
FaeI	CATG	8 cut(s)	35, 47, 152, 170, 197, 391, 880, 952
FatI	CATG	8 cut(s)	31, 43, 148, 166, 193, 387, 876, 948
Fnu4HI	GCNGC	5 cut(s)	29, 106, 574, 602, 720
Fsp4HI	GCNGC	5 cut(s)	29, 106, 574, 602, 720
FspBI	CTAG	3 cut(s)	542, 570, 959
GlaI	GCGC	1 cut(s)	660
GluI	GCNGC	5 cut(s)	29, 106, 574, 602, 720
GsuI	CTGGAG	2 cut(s)	775, 903
HaeIII	GGCC	5 cut(s)	121, 217, 372, 558, 608
HgaI	GACGC	2 cut(s)	785, 806
HhaI	GCGC	1 cut(s)	661
Hin1I	GRCGYC	1 cut(s)	798
Hin1II	CATG	8 cut(s)	35, 47, 152, 170, 197, 391, 880, 952
Hin6I	GCGC	1 cut(s)	659
HinP1I	GCGC	1 cut(s)	659
HinfI	GANTC	2 cut(s)	152, 393
HphI	GGTGA	6 cut(s)	16, 119, 631, 687, 806, 833
Hpy188I	TCNGA	4 cut(s)	72, 144, 301, 378
Hpy188III	TCNNGA	6 cut(s)	397, 542, 677, 725, 959, 986
HpyAV	CCTTC	5 cut(s)	166, 343, 383, 599, 674
HpyCH4III	ACNGT	3 cut(s)	548, 674, 932
HpyCH4IV	ACGT	2 cut(s)	746, 914
HpyCH4V	TGCA	5 cut(s)	31, 221, 604, 742, 887
HpyF10VI	GCNNNNNNNGC	2 cut(s)	118, 851
HpyF3I	CTNAG	4 cut(s)	113, 279, 298, 346
HpySE526I	ACGT	2 cut(s)	746, 914
Hsp92I	GRCGYC	1 cut(s)	798
Hsp92II	CATG	8 cut(s)	35, 47, 152, 170, 197, 391, 880, 952
HspAI	GCGC	1 cut(s)	659
Kzo9I	GATC	1 cut(s)	313
LguI	GCTCTTC	1 cut(s)	95
LmnI	GCTCC	2 cut(s)	532, 756
Lsp1109I	GCAGC	4 cut(s)	15, 117, 585, 588
LweI	GCATC	1 cut(s)	492
MaeI	CTAG	3 cut(s)	542, 570, 959
MaeII	ACGT	2 cut(s)	746, 914
MaeIII	GTNAC	6 cut(s)	20, 53, 319, 619, 674, 794
MalI	GATC	1 cut(s)	315
MbiI	CCGCTC	1 cut(s)	722
MboI	GATC	1 cut(s)	313
MfeI	CAATTG	1 cut(s)	789
MluCI	AATT	9 cut(s)	84, 176, 309, 507, 537, 614, 644, 664, 789
MluI	ACGCGT	1 cut(s)	777
MlyI	GAGTC	1 cut(s)	161
MmeI	TCCRAC	1 cut(s)	507
MnlI	CCTC	8 cut(s)	42, 140, 163, 166, 237, 523, 640, 901
MseI	TTAA	1 cut(s)	464
MspA1I	CMGCKG	1 cut(s)	601
MspR9I	CCNGG	2 cut(s)	81, 240
MunI	CAATTG	1 cut(s)	789
MvaI	CCWGG	2 cut(s)	81, 240
MvnI	CGCG	1 cut(s)	779
MwoI	GCNNNNNNNGC	2 cut(s)	118, 851
NcoI	CCATGG	1 cut(s)	948
NdeII	GATC	1 cut(s)	313
NlaIII	CATG	8 cut(s)	35, 47, 152, 170, 197, 391, 880, 952
NlaIV	GGNNCC	2 cut(s)	444, 534
NmuCI	GTSAC	4 cut(s)	20, 619, 674, 794
NspI	RCATGY	1 cut(s)	35
PciSI	GCTCTTC	1 cut(s)	95
PcsI	WCGNNNNNNNCGW	1 cut(s)	920
PfeI	GAWTC	1 cut(s)	393
PkrI	GCNGC	5 cut(s)	30, 107, 575, 603, 721
PleI	GAGTC	1 cut(s)	160
PpsI	GAGTC	1 cut(s)	160
Psp6I	CCWGG	2 cut(s)	79, 238
PspGI	CCWGG	2 cut(s)	79, 238
PspN4I	GGNNCC	2 cut(s)	444, 534
PspPI	GGNCC	1 cut(s)	556
PstI	CTGCAG	2 cut(s)	606, 744
PvuII	CAGCTG	1 cut(s)	601
RsaI	GTAC	1 cut(s)	858
RsaNI	GTAC	1 cut(s)	857
SapI	GCTCTTC	1 cut(s)	95
SaqAI	TTAA	1 cut(s)	464
SatI	GCNGC	5 cut(s)	29, 106, 574, 602, 720
Sau3AI	GATC	1 cut(s)	313
Sau96I	GGNCC	1 cut(s)	556
SchI	GAGTC	1 cut(s)	161
ScrFI	CCNGG	2 cut(s)	81, 240
SfaNI	GCATC	1 cut(s)	492
SfcI	CTRYAG	2 cut(s)	602, 740
SmlI	CTYRAG	4 cut(s)	131, 339, 723, 892
SmoI	CTYRAG	4 cut(s)	131, 339, 723, 892
Sse9I	AATT	9 cut(s)	84, 176, 309, 507, 537, 614, 644, 664, 789
SsiI	CCGC	2 cut(s)	350, 720
SspMI	CTAG	3 cut(s)	542, 570, 959
StyD4I	CCNGG	2 cut(s)	79, 238
StyI	CCWWGG	1 cut(s)	948
TaaI	ACNGT	3 cut(s)	548, 674, 932
TaiI	ACGT	2 cut(s)	749, 917
TaqI	TCGA	3 cut(s)	38, 833, 873
TasI	AATT	9 cut(s)	84, 176, 309, 507, 537, 614, 644, 664, 789
TatI	WGTACW	1 cut(s)	856
TauI	GCSGC	1 cut(s)	722
TfiI	GAWTC	1 cut(s)	393
Tru1I	TTAA	1 cut(s)	464
Tru9I	TTAA	1 cut(s)	464
TseFI	GTSAC	4 cut(s)	20, 619, 674, 794
TseI	GCWGC	4 cut(s)	28, 105, 573, 601
Tsp45I	GTSAC	4 cut(s)	20, 619, 674, 794
TspDTI	ATGAA	4 cut(s)	182, 702, 819, 915
XapI	RAATTY	2 cut(s)	644, 664
XbaI	TCTAGA	2 cut(s)	541, 958
XceI	RCATGY	1 cut(s)	35
XspI	CTAG	3 cut(s)	542, 570, 959

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.