Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7B

Orthogroup ID

OG0012622

Physical Location & Seq

Genomic Coordinates Reverse (-)

2095196 .. 2097347

Gene Structure 2152 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7BG031500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1110 bp

ATGGGGAGACCTCCTGCTTGTTGTGACAAACTGATCAATGTGAAGAAGGGCACTTGGACTGAAGAGGAAGATGCAAATATACTTGCTCATCATGTATCCAAGAATGGGATCGGTAACTGGACTTCTGTTCCGAAAAAAGCAGGACTTAATAGATGTGGGAAGAGTTGCAAGCCTAGGTGGAGTAATTACTTGAGGGCTAATCTGAAGCATGAAACCTTCACACCCCAAGAGGAAGAATTGATTGTTAGGCTTCATGCAACCATTGGTAGCAGGTGGCCTATAATAGCTCAACAACTTCCTGGGAGGACAGACAATGATGTGAAGACCTACTGGAACACGAAGCTGAAAAAGAAGCTCTCAGATATGGGAATTGATCCCGTTACTCACAAGCCCTTCTCTCAAATTTTAGCCGACTATGGAAACATTGGTGGCCTACCCAAATCTGGAATGCGAATCGGGATAGGTGCTTCCCTAAACAAGGACTTGAAGAATGCTATGCTGATGAAGTCATCAGAACCATACACATCAGGCTTGTCAAACTTCAACAACAGCCATTCGGTGCCAACGACCAAAATCGAACCAATGCAAGCCACTAGCAGCACCAAATTCGACTACTACCAACCCTATGATCTTCTCACACAGCTGCAAGCCATGAAATATGTGACAGAGGTCTCAAACTCCACCACCAACACCAACCCTGCTCCTTCCCCTGTCAATTTCTACAGTGAAGGCTCATTATCTTCTTCATCCTCGTCTACTTCTTCATCTGCTGCTGTGCAAGAGAAGTCACCTCTGGCCTTTGGATGGAGTGATTTTCTCCTAGAAGACGCATTTGTGCCAACTGAAGATGCTCGCGGAGCAATGCCACAAGGCGAAATTTGGGACCAAGCTACTATGCAAGATAATAATATGGCCGAGTCTTCATCCAAAGACATGTTTAACCAAGCACAAACAGAAAATGTGGGCATGAGTTATGGAATGTCAAGCAATCAAGTAGAGGCTATAGCTGATCCATGCGACAGTTCATTTGTGGAAGCCATGGTAGCTAAAGAGAATGACTTGTTCTTGGAGTTTCCTGAACTACTTCTGGAAGAACCATTCTACTACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000981 GO:0000988 GO:0000989 GO:0001067 GO:0001076 GO:0001134 GO:0001135 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006357 GO:0008150 GO:0009889 GO:0009987 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0030154 GO:0031323 GO:0031326 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044424 GO:0044464 GO:0048869 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-binding

Protein Analysis

369

Amino Acids

40.82

Weight (kDa)

5.29

Isoelectric Point (pI)

53.04

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Myb_DNA-binding	PF00249	16 - 64	1.9e-12	Myb-like DNA-binding domain
Myb_DNA-bind_6	PF13921	19 - 79	2.4e-08	Myb-like DNA-binding domain
Myb_DNA-binding	PF00249	72 - 113	3.2e-13	Myb-like DNA-binding domain
Myb_DNA-bind_6	PF13921	73 - 120	2e-07	Myb-like DNA-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012622)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g15900
malus_domestica	MD06G1184700.v1.1 MD14G1190600.v1.1
prunus_persica	Prupe.5G183500_v2.0.a1 Prupe.5G183500_v2.0.a1 Prupe.5G183500_v2.0.a1 Prupe.5G183500_v2.0.a1
rosa_chinensis	RchiOBHm_Chr7g0180151
rosa_laevigata	RLG00000005288
rosa_multiflora	Rmu_co8520481.1_g000001 Rmu_ssc0000119.1_g000038
rosa_roxburghii	Rroxscaffold_3G00273080
rosa_rugosa	Rorug06G0430800 Rorug06G0430900
rosa_samantha	Rh7AG031400 Rh7BG031500 Rh7CG033300 Rh7DG031900
rosa_wichuraiana	Rw7G002620

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	261
Acc36I	ACCTGC	1 cut(s)	261
AccB1I	GGYRCC	1 cut(s)	559
AccI	GTMKAC	1 cut(s)	755
AccII	CGCG	1 cut(s)	855
AciI	CCGC	1 cut(s)	855
AclWI	GGATC	3 cut(s)	116, 368, 1004
AcoI	YGGCCR	1 cut(s)	912
AcsI	RAATTY	3 cut(s)	402, 605, 876
AcuI	CTGAAG	3 cut(s)	81, 224, 864
AfiI	CCNNNNNNNGG	4 cut(s)	105, 443, 478, 804
AflIII	ACRYGT	1 cut(s)	933
AgsI	TTSAA	2 cut(s)	487, 544
AjnI	CCWGG	1 cut(s)	298
AluBI	AGCT	7 cut(s)	287, 343, 355, 643, 890, 1007, 1046
AluI	AGCT	7 cut(s)	287, 343, 355, 643, 890, 1007, 1046
Alw26I	GTCTC	1 cut(s)	676
AlwI	GGATC	3 cut(s)	116, 368, 1004
AoxI	GGCC	4 cut(s)	275, 430, 795, 912
ApeKI	GCWGC	3 cut(s)	597, 643, 770
ApoI	RAATTY	3 cut(s)	402, 605, 876
ArsI	GACNNNNNNTTYG	2 cut(s)	1010, 1042
Asp700I	GAANNNNTTC	1 cut(s)	1083
AspA2I	CCTAGG	1 cut(s)	173
AspS9I	GGNCC	1 cut(s)	883
AsuHPI	GGTGA	1 cut(s)	780
AvaII	GGWCC	1 cut(s)	883
AvrII	CCTAGG	1 cut(s)	173
BaeGI	GKGCMC	1 cut(s)	53
BanI	GGYRCC	1 cut(s)	559
BarI	GAAGNNNNNNTAC	2 cut(s)	106, 138
BbsI	GAAGAC	3 cut(s)	329, 831, 912
BbvI	GCAGC	3 cut(s)	609, 630, 757
BccI	CCATC	1 cut(s)	798
BcgI	CGANNNNNNTGC	2 cut(s)	589, 623
BciT130I	CCWGG	1 cut(s)	300
BciVI	GTATCC	1 cut(s)	106
BclI	TGATCA	1 cut(s)	33
BcoDI	GTCTC	1 cut(s)	676
BfaI	CTAG	3 cut(s)	174, 594, 821
BfmI	CTRYAG	2 cut(s)	721, 1002
BfuAI	ACCTGC	1 cut(s)	261
BfuI	GTATCC	1 cut(s)	106
BisI	GCNGC	3 cut(s)	598, 644, 771
BlnI	CCTAGG	1 cut(s)	173
BlsI	GCNGC	3 cut(s)	599, 645, 772
Bme1390I	CCNGG	1 cut(s)	300
Bme18I	GGWCC	1 cut(s)	883
BmgT120I	GGNCC	1 cut(s)	883
BmiI	GGNNCC	2 cut(s)	561, 884
BmrFI	CCNGG	1 cut(s)	300
BmsI	GCATC	2 cut(s)	61, 838
BoxI	GACNNNNGTC	1 cut(s)	668
BpiI	GAAGAC	3 cut(s)	329, 831, 912
BpuEI	CTTGAG	1 cut(s)	211
BsaI	GGTCTC	1 cut(s)	676
BsaJI	CCNNGG	3 cut(s)	173, 299, 1038
Bsc4I	CCNNNNNNNGG	4 cut(s)	105, 443, 478, 804
Bse1I	ACTGG	2 cut(s)	122, 335
Bse3DI	GCAATG	1 cut(s)	867
BseBI	CCWGG	1 cut(s)	300
BseDI	CCNNGG	3 cut(s)	173, 299, 1038
BseGI	GGATG	3 cut(s)	746, 809, 923
BseLI	CCNNNNNNNGG	4 cut(s)	105, 443, 478, 804
BseMI	GCAATG	1 cut(s)	867
BseMII	CTCAG	1 cut(s)	372
BseNI	ACTGG	2 cut(s)	122, 335
BseSI	GKGCMC	1 cut(s)	53
BseXI	GCAGC	3 cut(s)	609, 630, 757
Bsh1236I	CGCG	1 cut(s)	855
BshFI	GGCC	4 cut(s)	277, 432, 797, 914
BshNI	GGYRCC	1 cut(s)	559
BslFI	GGGAC	1 cut(s)	896
BslI	CCNNNNNNNGG	4 cut(s)	105, 443, 478, 804
BsmAI	GTCTC	1 cut(s)	676
BsmFI	GGGAC	1 cut(s)	896
BsmI	GAATGC	2 cut(s)	453, 496
BsnI	GGCC	4 cut(s)	277, 432, 797, 914
Bso31I	GGTCTC	1 cut(s)	676
Bsp1286I	GDGCHC	1 cut(s)	53
Bsp143I	GATC	5 cut(s)	33, 108, 373, 628, 1009
Bsp19I	CCATGG	1 cut(s)	1038
BspACI	CCGC	1 cut(s)	855
BspANI	GGCC	4 cut(s)	277, 432, 797, 914
BspCNI	CTCAG	1 cut(s)	371
BspFNI	CGCG	1 cut(s)	855
BspLI	GGNNCC	2 cut(s)	561, 884
BspMI	ACCTGC	1 cut(s)	261
BspPI	GGATC	3 cut(s)	116, 368, 1004
BspT107I	GGYRCC	1 cut(s)	559
BspTNI	GGTCTC	1 cut(s)	676
BsrDI	GCAATG	1 cut(s)	867
BsrI	ACTGG	2 cut(s)	122, 335
BssECI	CCNNGG	3 cut(s)	173, 299, 1038
BssMI	GATC	5 cut(s)	33, 108, 373, 628, 1009
BssT1I	CCWWGG	2 cut(s)	173, 1038
Bst2UI	CCWGG	1 cut(s)	300
Bst4CI	ACNGT	2 cut(s)	725, 1022
Bst6I	CTCTTC	2 cut(s)	57, 155
BstC8I	GCNNGC	4 cut(s)	170, 588, 648, 853
BstDEI	CTNAG	1 cut(s)	358
BstDSI	CCRYGG	1 cut(s)	1038
BstENI	CCTNNNNNAGG	1 cut(s)	476
BstF5I	GGATG	3 cut(s)	746, 809, 923
BstFNI	CGCG	1 cut(s)	855
BstKTI	GATC	5 cut(s)	36, 111, 376, 631, 1012
BstMAI	GTCTC	1 cut(s)	676
BstMBI	GATC	5 cut(s)	33, 108, 373, 628, 1009
BstMWI	GCNNNNNNNGC	2 cut(s)	857, 1043
BstNI	CCWGG	1 cut(s)	300
BstNSI	RCATGY	1 cut(s)	937
BstPAI	GACNNNNGTC	1 cut(s)	668
BstSCI	CCNGG	1 cut(s)	298
BstSFI	CTRYAG	2 cut(s)	721, 1002
BstSLI	GKGCMC	1 cut(s)	53
BstUI	CGCG	1 cut(s)	855
BstV1I	GCAGC	3 cut(s)	609, 630, 757
BstV2I	GAAGAC	3 cut(s)	329, 831, 912
BsuI	GTATCC	1 cut(s)	106
BsuRI	GGCC	4 cut(s)	277, 432, 797, 914
BtgI	CCRYGG	1 cut(s)	1038
BtsCI	GGATG	3 cut(s)	746, 809, 923
BtsIMutI	CAGTG	1 cut(s)	730
BveI	ACCTGC	1 cut(s)	261
Cac8I	GCNNGC	4 cut(s)	170, 588, 648, 853
Cfr13I	GGNCC	1 cut(s)	883
CseI	GACGC	1 cut(s)	836
CviAII	CATG	8 cut(s)	92, 209, 254, 652, 934, 967, 1014, 1039
DdeI	CTNAG	1 cut(s)	358
DpnI	GATC	5 cut(s)	35, 110, 375, 630, 1011
DpnII	GATC	5 cut(s)	33, 108, 373, 628, 1009
EaeI	YGGCCR	1 cut(s)	912
Eam1104I	CTCTTC	2 cut(s)	57, 155
EarI	CTCTTC	2 cut(s)	57, 155
Eco130I	CCWWGG	2 cut(s)	173, 1038
Eco31I	GGTCTC	1 cut(s)	676
Eco47I	GGWCC	1 cut(s)	883
Eco57I	CTGAAG	3 cut(s)	81, 224, 864
EcoNI	CCTNNNNNAGG	1 cut(s)	476
EcoRII	CCWGG	1 cut(s)	298
EcoT14I	CCWWGG	2 cut(s)	173, 1038
ErhI	CCWWGG	2 cut(s)	173, 1038
FaeI	CATG	8 cut(s)	95, 212, 257, 655, 937, 970, 1017, 1042
FalI	AAGNNNNNCTT	2 cut(s)	129, 161
FaqI	GGGAC	1 cut(s)	896
FatI	CATG	8 cut(s)	91, 208, 253, 651, 933, 966, 1013, 1038
FbaI	TGATCA	1 cut(s)	33
FblI	GTMKAC	1 cut(s)	755
Fnu4HI	GCNGC	3 cut(s)	598, 644, 771
FokI	GGATG	3 cut(s)	733, 816, 910
Fsp4HI	GCNGC	3 cut(s)	598, 644, 771
FspBI	CTAG	3 cut(s)	174, 594, 821
GluI	GCNGC	3 cut(s)	598, 644, 771
HaeIII	GGCC	4 cut(s)	277, 432, 797, 914
HgaI	GACGC	1 cut(s)	836
Hin1II	CATG	8 cut(s)	95, 212, 257, 655, 937, 970, 1017, 1042
HinfI	GANTC	2 cut(s)	453, 917
HphI	GGTGA	1 cut(s)	780
Hpy166II	GTNNAC	1 cut(s)	756
Hpy188I	TCNGA	4 cut(s)	132, 204, 361, 514
Hpy188III	TCNNGA	4 cut(s)	444, 457, 1076, 1088
Hpy8I	GTNNAC	1 cut(s)	756
HpyAV	CCTTC	5 cut(s)	40, 226, 403, 714, 722
HpyCH4III	ACNGT	2 cut(s)	725, 1022
HpyCH4V	TGCA	7 cut(s)	74, 168, 257, 586, 646, 778, 898
HpyF10VI	GCNNNNNNNGC	2 cut(s)	857, 1043
HpyF3I	CTNAG	1 cut(s)	358
Hsp92II	CATG	8 cut(s)	95, 212, 257, 655, 937, 970, 1017, 1042
Ksp22I	TGATCA	1 cut(s)	33
Kzo9I	GATC	5 cut(s)	33, 108, 373, 628, 1009
LmnI	GCTCC	2 cut(s)	706, 857
Lsp1109I	GCAGC	3 cut(s)	609, 630, 757
LweI	GCATC	2 cut(s)	61, 838
MaeI	CTAG	3 cut(s)	174, 594, 821
MaeIII	GTNAC	5 cut(s)	23, 113, 379, 661, 786
MalI	GATC	5 cut(s)	35, 110, 375, 630, 1011
MboI	GATC	5 cut(s)	33, 108, 373, 628, 1009
MhlI	GDGCHC	1 cut(s)	53
MluCI	AATT	7 cut(s)	184, 236, 369, 402, 605, 715, 876
MlyI	GAGTC	1 cut(s)	926
MnlI	CCTC	9 cut(s)	21, 58, 186, 223, 297, 661, 760, 801, 991
MroXI	GAANNNNTTC	1 cut(s)	1083
MseI	TTAA	2 cut(s)	147, 939
MspA1I	CMGCKG	1 cut(s)	643
MspR9I	CCNGG	1 cut(s)	300
Mva1269I	GAATGC	2 cut(s)	453, 496
MvaI	CCWGG	1 cut(s)	300
MvnI	CGCG	1 cut(s)	855
MwoI	GCNNNNNNNGC	2 cut(s)	857, 1043
NcoI	CCATGG	1 cut(s)	1038
NdeII	GATC	5 cut(s)	33, 108, 373, 628, 1009
NlaIII	CATG	8 cut(s)	95, 212, 257, 655, 937, 970, 1017, 1042
NlaIV	GGNNCC	2 cut(s)	561, 884
NmeAIII	GCCGAG	1 cut(s)	940
NmuCI	GTSAC	3 cut(s)	23, 661, 786
NspI	RCATGY	1 cut(s)	937
PaqCI	CACCTGC	1 cut(s)	261
PciI	ACATGT	1 cut(s)	933
PcsI	WCGNNNNNNNCGW	1 cut(s)	563
PctI	GAATGC	2 cut(s)	453, 496
PdmI	GAANNNNTTC	1 cut(s)	1083
PfeI	GAWTC	1 cut(s)	453
PkrI	GCNGC	3 cut(s)	599, 645, 772
PleI	GAGTC	1 cut(s)	925
PpsI	GAGTC	1 cut(s)	925
PscI	ACATGT	1 cut(s)	933
PshAI	GACNNNNGTC	1 cut(s)	668
Psp6I	CCWGG	1 cut(s)	298
PspGI	CCWGG	1 cut(s)	298
PspN4I	GGNNCC	2 cut(s)	561, 884
PspPI	GGNCC	1 cut(s)	883
PvuII	CAGCTG	1 cut(s)	643
SaqAI	TTAA	2 cut(s)	147, 939
SatI	GCNGC	3 cut(s)	598, 644, 771
Sau3AI	GATC	5 cut(s)	33, 108, 373, 628, 1009
Sau96I	GGNCC	1 cut(s)	883
SchI	GAGTC	1 cut(s)	926
ScrFI	CCNGG	1 cut(s)	300
SduI	GDGCHC	1 cut(s)	53
SfaNI	GCATC	2 cut(s)	61, 838
SfcI	CTRYAG	2 cut(s)	721, 1002
SinI	GGWCC	1 cut(s)	883
SmlI	CTYRAG	1 cut(s)	190
SmoI	CTYRAG	1 cut(s)	190
Sse9I	AATT	7 cut(s)	184, 236, 369, 402, 605, 715, 876
SsiI	CCGC	1 cut(s)	855
SspMI	CTAG	3 cut(s)	174, 594, 821
StyD4I	CCNGG	1 cut(s)	298
StyI	CCWWGG	2 cut(s)	173, 1038
TaaI	ACNGT	2 cut(s)	725, 1022
TaqI	TCGA	2 cut(s)	576, 609
TasI	AATT	7 cut(s)	184, 236, 369, 402, 605, 715, 876
TfiI	GAWTC	1 cut(s)	453
Tru1I	TTAA	2 cut(s)	147, 939
Tru9I	TTAA	2 cut(s)	147, 939
TscAI	CASTG	1 cut(s)	730
TseFI	GTSAC	3 cut(s)	23, 661, 786
TseI	GCWGC	3 cut(s)	597, 643, 770
Tsp45I	GTSAC	3 cut(s)	23, 661, 786
TspDTI	ATGAA	8 cut(s)	225, 242, 518, 668, 735, 753, 912, 1014
TspRI	CASTG	1 cut(s)	730
VpaK11BI	GGWCC	1 cut(s)	883
XagI	CCTNNNNNAGG	1 cut(s)	476
XapI	RAATTY	3 cut(s)	402, 605, 876
XceI	RCATGY	1 cut(s)	937
XmaJI	CCTAGG	1 cut(s)	173
XmiI	GTMKAC	1 cut(s)	755
XmnI	GAANNNNTTC	1 cut(s)	1083
XspI	CTAG	3 cut(s)	174, 594, 821

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.