Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb5

Orthogroup ID

OG0012622

Physical Location & Seq

Genomic Coordinates Forward (+)

9003949 .. 9005946

Gene Structure 1998 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_5g15900.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1101 bp

ATGGGGAGACCTCCTGCTTGTTGTGACAAGCTGATCAATGTGAAGAAGGGCACTTGGACTGAAGAGGAAGATGCAAATATAGTTGCTCATCATGGATCCAAGAATGGGATCGGTAACTGGACTTCTGTTCCGAAAAAAGCAGGACTTAATAGATGTGGGAAGAGTTGCAAGCCTAGGTGGAGTAATTACTTGAAGGCTGATCTGAAGCCTGAAACCTTCACACCCCAAGAGGAAGAATTGATTGTTAGGCTTCATGCAACCATTGGTAGCAGGTGGCCTATAATAGCTCAGCAACTTCCTGGGAGGACAGACAATGATGTAAAGACTTACTGGAACACTAAGCTCAAAAAGAAGCTCACAGATATGGGAATTGATCCAGTTACTCACAGGCCCTTCTCTCAAATTTTAGCCGACTATGGAAACATCAGCGGCCTACCCAAATCTGGAATGCGTATCGCTATAGGTGGTTCCCTGAATAAGGACTTGAAAAATGCAATGCTGATGAAATCACCAGAAGCATACACATCAGGCTTATCAAACTTCAACAACAGCCATTTGGTGTCAACAACCAAAATCGAACAAATGCAAGCCACTAGCAGCACCAATTTCGACTACTACCAACCTTATGATCTTCTCACACAGCTGCAAGCCATGAAATATGTGACAGAGGTCTCAAACTCCACCACAAACACCAACCCTGCTCCTTCCCCTTTCAATTTCTACAGCGAATGCTCGTTATCATCTTCATCCTCGTCTACTTGTTCATCTGCTGCCGTGCAAGAGAAGTCACCTCTGGCCTTTGGATGGAGTGATTTTCTCCTGGAAGAAGCATTTGTGCCAACTGAAGATGCTCGACAAGGCGAGATTTGCTGGGACGTCCAAGCAACTATGCAAAATGATACTGCCGAGTCTTCATCAAAAAACATGTTTAACCAAGCACAAACTGAAAATGAGGGCACGATTTATGGAATGTCAAGCAATCAAGTAGAGGCTACAGCTGATCCATGTGAGAGTTCATTTGTGGAAGCCATGGTAGCTAAAGATAATGACTTGTTCTTGGAGTTTCCTGAACTTCTTCTGGAAGAACCATTCTACTACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000981 GO:0000988 GO:0000989 GO:0001067 GO:0001076 GO:0001134 GO:0001135 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006357 GO:0008150 GO:0009889 GO:0009987 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0030154 GO:0031323 GO:0031326 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044424 GO:0044464 GO:0048869 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-binding

Protein Analysis

367

Amino Acids

40.63

Weight (kDa)

5.07

Isoelectric Point (pI)

49.09

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Myb_DNA-binding	PF00249	16 - 64	2.4e-11	Myb-like DNA-binding domain
Myb_DNA-bind_6	PF13921	19 - 78	1e-06	Myb-like DNA-binding domain
Myb_DNA-binding	PF00249	72 - 113	3.4e-13	Myb-like DNA-binding domain
Myb_DNA-bind_6	PF13921	73 - 119	4.3e-07	Myb-like DNA-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012622)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g15900
malus_domestica	MD06G1184700.v1.1 MD14G1190600.v1.1
prunus_persica	Prupe.5G183500_v2.0.a1 Prupe.5G183500_v2.0.a1 Prupe.5G183500_v2.0.a1 Prupe.5G183500_v2.0.a1
rosa_chinensis	RchiOBHm_Chr7g0180151
rosa_laevigata	RLG00000005288
rosa_multiflora	Rmu_co8520481.1_g000001 Rmu_ssc0000119.1_g000038
rosa_roxburghii	Rroxscaffold_3G00273080
rosa_rugosa	Rorug06G0430800 Rorug06G0430900
rosa_samantha	Rh7AG031400 Rh7BG031500 Rh7CG033300 Rh7DG031900
rosa_wichuraiana	Rw7G002620

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	261
AatII	GACGTC	1 cut(s)	879
Acc36I	ACCTGC	1 cut(s)	261
AccI	GTMKAC	1 cut(s)	755
AciI	CCGC	1 cut(s)	429
AclWI	GGATC	5 cut(s)	90, 103, 116, 368, 995
AcsI	RAATTY	1 cut(s)	402
AcuI	CTGAAG	3 cut(s)	81, 224, 864
AcyI	GRCGYC	1 cut(s)	876
AfiI	CCNNNNNNNGG	4 cut(s)	105, 443, 478, 804
AflIII	ACRYGT	1 cut(s)	924
AgsI	TTSAA	4 cut(s)	193, 487, 544, 715
AjnI	CCWGG	2 cut(s)	298, 819
AluBI	AGCT	7 cut(s)	31, 287, 343, 355, 643, 998, 1037
AluI	AGCT	7 cut(s)	31, 287, 343, 355, 643, 998, 1037
Alw26I	GTCTC	1 cut(s)	676
AlwI	GGATC	5 cut(s)	90, 103, 116, 368, 995
AoxI	GGCC	4 cut(s)	275, 389, 430, 795
ApeKI	GCWGC	3 cut(s)	597, 643, 770
ApoI	RAATTY	1 cut(s)	402
Asp700I	GAANNNNTTC	1 cut(s)	1074
AspA2I	CCTAGG	1 cut(s)	173
AspS9I	GGNCC	1 cut(s)	390
AsuHPI	GGTGA	2 cut(s)	501, 780
AvrII	CCTAGG	1 cut(s)	173
BaeGI	GKGCMC	2 cut(s)	53, 959
BamHI	GGATCC	1 cut(s)	95
BarI	GAAGNNNNNNTAC	2 cut(s)	106, 138
BbsI	GAAGAC	1 cut(s)	903
BbvI	GCAGC	3 cut(s)	609, 630, 757
BccI	CCATC	1 cut(s)	798
BceAI	ACGGC	1 cut(s)	758
BcgI	CGANNNNNNTGC	2 cut(s)	589, 623
BciT130I	CCWGG	2 cut(s)	300, 821
BclI	TGATCA	1 cut(s)	33
BcoDI	GTCTC	1 cut(s)	676
BfaI	CTAG	2 cut(s)	174, 594
BfmI	CTRYAG	3 cut(s)	459, 721, 993
BfuAI	ACCTGC	1 cut(s)	261
BisI	GCNGC	4 cut(s)	430, 598, 644, 771
BlnI	CCTAGG	1 cut(s)	173
BlpI	GCTNAGC	1 cut(s)	288
BlsI	GCNGC	4 cut(s)	431, 599, 645, 772
Bme1390I	CCNGG	2 cut(s)	300, 821
BmgT120I	GGNCC	1 cut(s)	390
BmiI	GGNNCC	2 cut(s)	97, 469
BmrFI	CCNGG	2 cut(s)	300, 821
BmsI	GCATC	2 cut(s)	61, 838
BoxI	GACNNNNGTC	1 cut(s)	668
BpiI	GAAGAC	1 cut(s)	903
Bpu1102I	GCTNAGC	1 cut(s)	288
BsaHI	GRCGYC	1 cut(s)	876
BsaI	GGTCTC	1 cut(s)	676
BsaJI	CCNNGG	3 cut(s)	173, 299, 1029
Bsc4I	CCNNNNNNNGG	4 cut(s)	105, 443, 478, 804
Bse1I	ACTGG	3 cut(s)	122, 335, 377
Bse3DI	GCAATG	1 cut(s)	501
BseBI	CCWGG	2 cut(s)	300, 821
BseDI	CCNNGG	3 cut(s)	173, 299, 1029
BseGI	GGATG	2 cut(s)	746, 809
BseLI	CCNNNNNNNGG	4 cut(s)	105, 443, 478, 804
BseMI	GCAATG	1 cut(s)	501
BseMII	CTCAG	1 cut(s)	302
BseNI	ACTGG	3 cut(s)	122, 335, 377
BseSI	GKGCMC	2 cut(s)	53, 959
BseXI	GCAGC	3 cut(s)	609, 630, 757
BseYI	CCCAGC	1 cut(s)	870
BshFI	GGCC	4 cut(s)	277, 391, 432, 797
BslFI	GGGAC	1 cut(s)	887
BslI	CCNNNNNNNGG	4 cut(s)	105, 443, 478, 804
BsmAI	GTCTC	1 cut(s)	676
BsmFI	GGGAC	1 cut(s)	887
BsmI	GAATGC	2 cut(s)	453, 734
BsnI	GGCC	4 cut(s)	277, 391, 432, 797
Bso31I	GGTCTC	1 cut(s)	676
Bsp1286I	GDGCHC	2 cut(s)	53, 959
Bsp143I	GATC	7 cut(s)	33, 95, 108, 199, 373, 628, 1000
Bsp1720I	GCTNAGC	1 cut(s)	288
Bsp19I	CCATGG	1 cut(s)	1029
BspACI	CCGC	1 cut(s)	429
BspANI	GGCC	4 cut(s)	277, 391, 432, 797
BspCNI	CTCAG	1 cut(s)	301
BspLI	GGNNCC	2 cut(s)	97, 469
BspMI	ACCTGC	1 cut(s)	261
BspPI	GGATC	5 cut(s)	90, 103, 116, 368, 995
BspTNI	GGTCTC	1 cut(s)	676
BsrDI	GCAATG	1 cut(s)	501
BsrI	ACTGG	3 cut(s)	122, 335, 377
BssECI	CCNNGG	3 cut(s)	173, 299, 1029
BssMI	GATC	7 cut(s)	33, 95, 108, 199, 373, 628, 1000
BssNI	GRCGYC	1 cut(s)	876
BssT1I	CCWWGG	2 cut(s)	173, 1029
Bst2UI	CCWGG	2 cut(s)	300, 821
Bst6I	CTCTTC	2 cut(s)	57, 155
BstACI	GRCGYC	1 cut(s)	876
BstC8I	GCNNGC	3 cut(s)	170, 588, 648
BstDEI	CTNAG	2 cut(s)	288, 339
BstDSI	CCRYGG	1 cut(s)	1029
BstENI	CCTNNNNNAGG	1 cut(s)	476
BstF5I	GGATG	2 cut(s)	746, 809
BstKTI	GATC	7 cut(s)	36, 98, 111, 202, 376, 631, 1003
BstMAI	GTCTC	1 cut(s)	676
BstMBI	GATC	7 cut(s)	33, 95, 108, 199, 373, 628, 1000
BstMWI	GCNNNNNNNGC	2 cut(s)	867, 1034
BstNI	CCWGG	2 cut(s)	300, 821
BstNSI	RCATGY	1 cut(s)	928
BstPAI	GACNNNNGTC	1 cut(s)	668
BstSCI	CCNGG	2 cut(s)	298, 819
BstSFI	CTRYAG	3 cut(s)	459, 721, 993
BstSLI	GKGCMC	2 cut(s)	53, 959
BstV1I	GCAGC	3 cut(s)	609, 630, 757
BstV2I	GAAGAC	1 cut(s)	903
BstX2I	RGATCY	1 cut(s)	95
BstYI	RGATCY	1 cut(s)	95
BsuRI	GGCC	4 cut(s)	277, 391, 432, 797
BtgI	CCRYGG	1 cut(s)	1029
BtsCI	GGATG	2 cut(s)	746, 809
BveI	ACCTGC	1 cut(s)	261
Cac8I	GCNNGC	3 cut(s)	170, 588, 648
Cfr13I	GGNCC	1 cut(s)	390
CviAII	CATG	6 cut(s)	92, 254, 652, 925, 1005, 1030
DdeI	CTNAG	2 cut(s)	288, 339
DpnI	GATC	7 cut(s)	35, 97, 110, 201, 375, 630, 1002
DpnII	GATC	7 cut(s)	33, 95, 108, 199, 373, 628, 1000
Eam1104I	CTCTTC	2 cut(s)	57, 155
EarI	CTCTTC	2 cut(s)	57, 155
Eco130I	CCWWGG	2 cut(s)	173, 1029
Eco31I	GGTCTC	1 cut(s)	676
Eco57I	CTGAAG	3 cut(s)	81, 224, 864
EcoNI	CCTNNNNNAGG	1 cut(s)	476
EcoO109I	RGGNCCY	1 cut(s)	390
EcoRII	CCWGG	2 cut(s)	298, 819
EcoT14I	CCWWGG	2 cut(s)	173, 1029
ErhI	CCWWGG	2 cut(s)	173, 1029
FaeI	CATG	6 cut(s)	95, 257, 655, 928, 1008, 1033
FalI	AAGNNNNNCTT	2 cut(s)	129, 161
FaqI	GGGAC	1 cut(s)	887
FatI	CATG	6 cut(s)	91, 253, 651, 924, 1004, 1029
FbaI	TGATCA	1 cut(s)	33
FblI	GTMKAC	1 cut(s)	755
Fnu4HI	GCNGC	4 cut(s)	430, 598, 644, 771
FokI	GGATG	2 cut(s)	733, 816
Fsp4HI	GCNGC	4 cut(s)	430, 598, 644, 771
FspBI	CTAG	2 cut(s)	174, 594
GluI	GCNGC	4 cut(s)	430, 598, 644, 771
GsaI	CCCAGC	1 cut(s)	874
HaeIII	GGCC	4 cut(s)	277, 391, 432, 797
Hin1I	GRCGYC	1 cut(s)	876
Hin1II	CATG	6 cut(s)	95, 257, 655, 928, 1008, 1033
HincII	GTYRAC	1 cut(s)	564
HindII	GTYRAC	1 cut(s)	564
HinfI	GANTC	1 cut(s)	908
HphI	GGTGA	2 cut(s)	501, 780
Hpy166II	GTNNAC	2 cut(s)	564, 756
Hpy188I	TCNGA	2 cut(s)	132, 204
Hpy188III	TCNNGA	3 cut(s)	444, 1067, 1079
Hpy8I	GTNNAC	2 cut(s)	564, 756
HpyAV	CCTTC	5 cut(s)	40, 187, 226, 403, 714
HpyCH4IV	ACGT	1 cut(s)	876
HpyCH4V	TGCA	8 cut(s)	74, 168, 257, 494, 586, 646, 778, 892
HpyF10VI	GCNNNNNNNGC	2 cut(s)	867, 1034
HpyF3I	CTNAG	2 cut(s)	288, 339
HpySE526I	ACGT	1 cut(s)	876
Hsp92I	GRCGYC	1 cut(s)	876
Hsp92II	CATG	6 cut(s)	95, 257, 655, 928, 1008, 1033
Ksp22I	TGATCA	1 cut(s)	33
Kzo9I	GATC	7 cut(s)	33, 95, 108, 199, 373, 628, 1000
LmnI	GCTCC	1 cut(s)	706
Lsp1109I	GCAGC	3 cut(s)	609, 630, 757
LweI	GCATC	2 cut(s)	61, 838
MaeI	CTAG	2 cut(s)	174, 594
MaeII	ACGT	1 cut(s)	876
MaeIII	GTNAC	5 cut(s)	23, 113, 379, 661, 786
MalI	GATC	7 cut(s)	35, 97, 110, 201, 375, 630, 1002
MboI	GATC	7 cut(s)	33, 95, 108, 199, 373, 628, 1000
MflI	RGATCY	1 cut(s)	95
MhlI	GDGCHC	2 cut(s)	53, 959
MluCI	AATT	6 cut(s)	184, 236, 369, 402, 604, 715
MlyI	GAGTC	1 cut(s)	917
MnlI	CCTC	9 cut(s)	21, 58, 223, 297, 661, 760, 801, 946, 982
MroXI	GAANNNNTTC	1 cut(s)	1074
MseI	TTAA	2 cut(s)	147, 930
MslI	CAYNNNNRTG	1 cut(s)	362
MspA1I	CMGCKG	3 cut(s)	429, 643, 998
MspR9I	CCNGG	2 cut(s)	300, 821
Mva1269I	GAATGC	2 cut(s)	453, 734
MvaI	CCWGG	2 cut(s)	300, 821
MwoI	GCNNNNNNNGC	2 cut(s)	867, 1034
NcoI	CCATGG	1 cut(s)	1029
NdeII	GATC	7 cut(s)	33, 95, 108, 199, 373, 628, 1000
NlaIII	CATG	6 cut(s)	95, 257, 655, 928, 1008, 1033
NlaIV	GGNNCC	2 cut(s)	97, 469
NmeAIII	GCCGAG	1 cut(s)	931
NmuCI	GTSAC	3 cut(s)	23, 661, 786
NspI	RCATGY	1 cut(s)	928
PaqCI	CACCTGC	1 cut(s)	261
PciI	ACATGT	1 cut(s)	924
PctI	GAATGC	2 cut(s)	453, 734
PdmI	GAANNNNTTC	1 cut(s)	1074
PfoI	TCCNGGA	1 cut(s)	819
PkrI	GCNGC	4 cut(s)	431, 599, 645, 772
PleI	GAGTC	1 cut(s)	916
PpsI	GAGTC	1 cut(s)	916
PscI	ACATGT	1 cut(s)	924
PshAI	GACNNNNGTC	1 cut(s)	668
Psp6I	CCWGG	2 cut(s)	298, 819
PspFI	CCCAGC	1 cut(s)	870
PspGI	CCWGG	2 cut(s)	298, 819
PspN4I	GGNNCC	2 cut(s)	97, 469
PspPI	GGNCC	1 cut(s)	390
PsuI	RGATCY	1 cut(s)	95
PvuII	CAGCTG	2 cut(s)	643, 998
RseI	CAYNNNNRTG	1 cut(s)	362
SaqAI	TTAA	2 cut(s)	147, 930
SatI	GCNGC	4 cut(s)	430, 598, 644, 771
Sau3AI	GATC	7 cut(s)	33, 95, 108, 199, 373, 628, 1000
Sau96I	GGNCC	1 cut(s)	390
SchI	GAGTC	1 cut(s)	917
ScrFI	CCNGG	2 cut(s)	300, 821
SduI	GDGCHC	2 cut(s)	53, 959
SfaNI	GCATC	2 cut(s)	61, 838
SfcI	CTRYAG	3 cut(s)	459, 721, 993
SmiMI	CAYNNNNRTG	1 cut(s)	362
Sse9I	AATT	6 cut(s)	184, 236, 369, 402, 604, 715
SsiI	CCGC	1 cut(s)	429
SspMI	CTAG	2 cut(s)	174, 594
StyD4I	CCNGG	2 cut(s)	298, 819
StyI	CCWWGG	2 cut(s)	173, 1029
TaiI	ACGT	1 cut(s)	879
TaqI	TCGA	3 cut(s)	576, 609, 853
TasI	AATT	6 cut(s)	184, 236, 369, 402, 604, 715
TauI	GCSGC	1 cut(s)	432
Tru1I	TTAA	2 cut(s)	147, 930
Tru9I	TTAA	2 cut(s)	147, 930
TseFI	GTSAC	3 cut(s)	23, 661, 786
TseI	GCWGC	3 cut(s)	597, 643, 770
Tsp45I	GTSAC	3 cut(s)	23, 661, 786
TspDTI	ATGAA	7 cut(s)	242, 518, 668, 735, 753, 903, 1005
XagI	CCTNNNNNAGG	1 cut(s)	476
XapI	RAATTY	1 cut(s)	402
XceI	RCATGY	1 cut(s)	928
XmaJI	CCTAGG	1 cut(s)	173
XmiI	GTMKAC	1 cut(s)	755
XmnI	GAANNNNTTC	1 cut(s)	1074
XspI	CTAG	2 cut(s)	174, 594
ZraI	GACGTC	1 cut(s)	877

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.