Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp05

Orthogroup ID

OG0012622

Physical Location & Seq

Genomic Coordinates Reverse (-)

15269159 .. 15272490

Gene Structure 3332 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.5G183500.4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1083 bp

ATGGTGAGGCCTGCTTGTTGTGAAAAGCTGCATTTGAAAAGGGGTCTTTGGACTGAAGAGGAAGATGCAAAGATACTCGCGCATGGGTCGAAGCATGGAAATAGTAACTGGACTGCTTTTCCAAAAAAAGCAGGACTTACAAGATGTGGGAAGAGTTGCAGGCTTAGGTGGACTAATTACCTGAGGCCTAATCTCAAGCATGAGTCCTTCACACCCCATGAGGAGGAATTGATTGTCAGGCTTCATGCAACCATAGGCAGCAGGTGGCCTATAATAGCTCAGCAACTTCCTGGGAGGACAGACAAAGATGTAAAGAACTACTGGAACACTAAGCTGAAAAAGAAGCTCTCAGAAATGGGAATTGATCATGTTACTCATAAGCCCTTCTCTCAAATCTTAGCGGACTATGGAAACATCGGTGGCCTCCCGAAAGCTGGAATGAGAATGGCAATAGGTTCTCTCAACAAAGACTTGAAGAATGCAATCCTGATGAAGCCAGAATTACCATATTCATTGTCAACACAAGGATTTTCCAATATCAACAGCCATTTGATGCCAATGACAATGATACCAATCAAAATGGAACCAATTCAAGACAGTTTCTTGAGCAACGCTCAATCTAGCAACCAACCCTTTGATCTTCTTACACAGCTGCAGGCCATAAGATTGGTGACAGAGGCCTCAAACTCAACCAACCTTGAATCTTCCCCTCCCAATTTGTACATTCATGAAGGCACATTGTCATCATCACCATCATCTTCTACTTGTTCATCTGCTGCGCAAGAGCAGGCAACCCTGCAGGCCTTTAGCTGGAGCGATTTTCTCCTTGAAGACGCGTTTTTTCCAACCAGTGATGCTCAAGAACACGAGGATAAGGCTGAGCATTCGTCGATGGACATGTTGAACCAATCGAAAGCAGCAATACCACAAAGCCAAATTGAAGACCAAGCTGGTATGCAAAAATATAATGAAGTTGAGGCTACATCTCCATGTGACAGTTCATTTGTGGAGGCCATGGTCGCAAGAGAGAATGAGATGTTCTTGGAGTTTCCCCAACTTATGGAAGAACCATTCTACTACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000981 GO:0000988 GO:0000989 GO:0001067 GO:0001076 GO:0001134 GO:0001135 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006357 GO:0008150 GO:0009889 GO:0009987 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0030154 GO:0031323 GO:0031326 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044424 GO:0044464 GO:0048869 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-binding

Protein Analysis

361

Amino Acids

40.49

Weight (kDa)

5.86

Isoelectric Point (pI)

57.47

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012622)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g15900
malus_domestica	MD06G1184700.v1.1 MD14G1190600.v1.1
prunus_persica	Prupe.5G183500_v2.0.a1 Prupe.5G183500_v2.0.a1 Prupe.5G183500_v2.0.a1 Prupe.5G183500_v2.0.a1
rosa_chinensis	RchiOBHm_Chr7g0180151
rosa_laevigata	RLG00000005288
rosa_multiflora	Rmu_co8520481.1_g000001 Rmu_ssc0000119.1_g000038
rosa_roxburghii	Rroxscaffold_3G00273080
rosa_rugosa	Rorug06G0430800 Rorug06G0430900
rosa_samantha	Rh7AG031400 Rh7BG031500 Rh7CG033300 Rh7DG031900
rosa_wichuraiana	Rw7G002620

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	252
Acc16I	TGCGCA	1 cut(s)	780
Acc36I	ACCTGC	1 cut(s)	252
AccB7I	CCANNNNNTGG	1 cut(s)	1060
AccII	CGCG	2 cut(s)	80, 836
AciI	CCGC	1 cut(s)	401
AcuI	CTGAAG	1 cut(s)	75
AfaI	GTAC	1 cut(s)	722
AfiI	CCNNNNNNNGG	4 cut(s)	223, 434, 810, 1060
AflIII	ACRYGT	2 cut(s)	834, 897
AgsI	TTSAA	7 cut(s)	37, 475, 593, 701, 830, 904, 941
AjnI	CCWGG	1 cut(s)	289
AluBI	AGCT	8 cut(s)	28, 278, 334, 346, 434, 652, 810, 950
AluI	AGCT	8 cut(s)	28, 278, 334, 346, 434, 652, 810, 950
AoxI	GGCC	8 cut(s)	8, 185, 266, 421, 657, 678, 801, 1011
ApeKI	GCWGC	5 cut(s)	28, 258, 652, 776, 917
ArsI	GACNNNNNNTTYG	2 cut(s)	986, 1018
Asp700I	GAANNNNTTC	1 cut(s)	588
AspLEI	GCGC	2 cut(s)	82, 781
AsuHPI	GGTGA	3 cut(s)	16, 682, 741
AxyI	CCTNAGG	1 cut(s)	182
BauI	CACGAG	1 cut(s)	866
BbsI	GAAGAC	2 cut(s)	837, 948
BbvI	GCAGC	5 cut(s)	15, 270, 639, 763, 929
BccI	CCATC	2 cut(s)	760, 886
BciT130I	CCWGG	1 cut(s)	291
BclI	TGATCA	1 cut(s)	364
BfaI	CTAG	1 cut(s)	621
BfmI	CTRYAG	2 cut(s)	653, 797
BfuAI	ACCTGC	1 cut(s)	252
BisI	GCNGC	5 cut(s)	29, 259, 653, 777, 918
BlpI	GCTNAGC	2 cut(s)	279, 879
BlsI	GCNGC	5 cut(s)	30, 260, 654, 778, 919
Bme1390I	CCNGG	1 cut(s)	291
BmiI	GGNNCC	1 cut(s)	585
BmrFI	CCNGG	1 cut(s)	291
BmsI	GCATC	3 cut(s)	55, 543, 844
BpiI	GAAGAC	2 cut(s)	837, 948
BplI	GAGNNNNNCTC	2 cut(s)	598, 630
BpmI	CTGGAG	1 cut(s)	832
Bpu10I	CCTNAGC	1 cut(s)	164
Bpu1102I	GCTNAGC	2 cut(s)	279, 879
BpuEI	CTTGAG	3 cut(s)	179, 625, 843
BsaBI	GATNNNNATC	1 cut(s)	572
BsaJI	CCNNGG	2 cut(s)	290, 1014
Bsc4I	CCNNNNNNNGG	4 cut(s)	223, 434, 810, 1060
Bse1I	ACTGG	3 cut(s)	113, 326, 849
Bse21I	CCTNAGG	1 cut(s)	182
Bse8I	GATNNNNATC	1 cut(s)	572
BseBI	CCWGG	1 cut(s)	291
BseDI	CCNNGG	2 cut(s)	290, 1014
BseJI	GATNNNNATC	1 cut(s)	572
BseLI	CCNNNNNNNGG	4 cut(s)	223, 434, 810, 1060
BseMII	CTCAG	4 cut(s)	173, 293, 363, 870
BseNI	ACTGG	3 cut(s)	113, 326, 849
BseRI	GAGGAG	1 cut(s)	236
BseXI	GCAGC	5 cut(s)	15, 270, 639, 763, 929
Bsh1236I	CGCG	2 cut(s)	80, 836
BshFI	GGCC	8 cut(s)	10, 187, 268, 423, 659, 680, 803, 1013
BslI	CCNNNNNNNGG	4 cut(s)	223, 434, 810, 1060
BsmI	GAATGC	2 cut(s)	484, 883
BsnI	GGCC	8 cut(s)	10, 187, 268, 423, 659, 680, 803, 1013
Bsp1407I	TGTACA	1 cut(s)	720
Bsp143I	GATC	2 cut(s)	364, 637
Bsp1720I	GCTNAGC	2 cut(s)	279, 879
Bsp19I	CCATGG	1 cut(s)	1014
BspACI	CCGC	1 cut(s)	401
BspANI	GGCC	8 cut(s)	10, 187, 268, 423, 659, 680, 803, 1013
BspCNI	CTCAG	4 cut(s)	174, 292, 362, 871
BspFNI	CGCG	2 cut(s)	80, 836
BspHI	TCATGA	1 cut(s)	727
BspLI	GGNNCC	1 cut(s)	585
BspMAI	CTGCAG	2 cut(s)	657, 801
BspMI	ACCTGC	1 cut(s)	252
BsrGI	TGTACA	1 cut(s)	720
BsrI	ACTGG	3 cut(s)	113, 326, 849
BssECI	CCNNGG	2 cut(s)	290, 1014
BssMI	GATC	2 cut(s)	364, 637
BssSI	CACGAG	1 cut(s)	866
BssT1I	CCWWGG	1 cut(s)	1014
Bst2BI	CACGAG	1 cut(s)	866
Bst2UI	CCWGG	1 cut(s)	291
Bst4CI	ACNGT	2 cut(s)	599, 998
Bst6I	CTCTTC	2 cut(s)	51, 146
BstAUI	TGTACA	1 cut(s)	720
BstC8I	GCNNGC	5 cut(s)	12, 161, 657, 789, 801
BstDEI	CTNAG	7 cut(s)	164, 182, 279, 330, 349, 397, 879
BstDSI	CCRYGG	1 cut(s)	1014
BstFNI	CGCG	2 cut(s)	80, 836
BstHHI	GCGC	2 cut(s)	82, 781
BstKTI	GATC	2 cut(s)	367, 640
BstMBI	GATC	2 cut(s)	364, 637
BstMWI	GCNNNNNNNGC	1 cut(s)	1019
BstNI	CCWGG	1 cut(s)	291
BstNSI	RCATGY	1 cut(s)	901
BstSCI	CCNGG	1 cut(s)	289
BstSFI	CTRYAG	2 cut(s)	653, 797
BstUI	CGCG	2 cut(s)	80, 836
BstV1I	GCAGC	5 cut(s)	15, 270, 639, 763, 929
BstV2I	GAAGAC	2 cut(s)	837, 948
BstXI	CCANNNNNNTGG	1 cut(s)	667
Bsu36I	CCTNAGG	1 cut(s)	182
BsuRI	GGCC	8 cut(s)	10, 187, 268, 423, 659, 680, 803, 1013
BtgI	CCRYGG	1 cut(s)	1014
BtsIMutI	CAGTG	1 cut(s)	856
BveI	ACCTGC	1 cut(s)	252
Cac8I	GCNNGC	5 cut(s)	12, 161, 657, 789, 801
CciI	TCATGA	1 cut(s)	727
CfoI	GCGC	2 cut(s)	82, 781
CseI	GACGC	1 cut(s)	842
Csp6I	GTAC	1 cut(s)	721
CviQI	GTAC	1 cut(s)	721
DdeI	CTNAG	7 cut(s)	164, 182, 279, 330, 349, 397, 879
DpnI	GATC	2 cut(s)	366, 639
DpnII	GATC	2 cut(s)	364, 637
Eam1104I	CTCTTC	2 cut(s)	51, 146
EarI	CTCTTC	2 cut(s)	51, 146
Eco130I	CCWWGG	1 cut(s)	1014
Eco147I	AGGCCT	4 cut(s)	10, 187, 680, 803
Eco57I	CTGAAG	1 cut(s)	75
Eco81I	CCTNAGG	1 cut(s)	182
EcoRII	CCWGG	1 cut(s)	289
EcoT14I	CCWWGG	1 cut(s)	1014
ErhI	CCWWGG	1 cut(s)	1014
FalI	AAGNNNNNCTT	2 cut(s)	120, 152
FbaI	TGATCA	1 cut(s)	364
Fnu4HI	GCNGC	5 cut(s)	29, 259, 653, 777, 918
Fsp4HI	GCNGC	5 cut(s)	29, 259, 653, 777, 918
FspBI	CTAG	1 cut(s)	621
FspI	TGCGCA	1 cut(s)	780
GlaI	GCGC	2 cut(s)	81, 780
GluI	GCNGC	5 cut(s)	29, 259, 653, 777, 918
GsuI	CTGGAG	1 cut(s)	832
HaeIII	GGCC	8 cut(s)	10, 187, 268, 423, 659, 680, 803, 1013
HgaI	GACGC	1 cut(s)	842
HhaI	GCGC	2 cut(s)	82, 781
Hin6I	GCGC	2 cut(s)	80, 779
HinP1I	GCGC	2 cut(s)	80, 779
HincII	GTYRAC	1 cut(s)	519
HindII	GTYRAC	1 cut(s)	519
HinfI	GANTC	2 cut(s)	203, 701
HphI	GGTGA	3 cut(s)	16, 682, 741
Hpy166II	GTNNAC	2 cut(s)	171, 519
Hpy188I	TCNGA	1 cut(s)	352
Hpy188III	TCNNGA	6 cut(s)	427, 487, 593, 604, 728, 860
Hpy8I	GTNNAC	2 cut(s)	171, 519
Hpy99I	CGWCG	1 cut(s)	892
HpyAV	CCTTC	3 cut(s)	217, 394, 725
HpyCH4III	ACNGT	2 cut(s)	599, 998
HpyCH4V	TGCA	8 cut(s)	31, 68, 159, 248, 482, 655, 799, 958
HpyF10VI	GCNNNNNNNGC	1 cut(s)	1019
HpyF3I	CTNAG	7 cut(s)	164, 182, 279, 330, 349, 397, 879
HspAI	GCGC	2 cut(s)	80, 779
Ksp22I	TGATCA	1 cut(s)	364
Kzo9I	GATC	2 cut(s)	364, 637
LmnI	GCTCC	1 cut(s)	813
Lsp1109I	GCAGC	5 cut(s)	15, 270, 639, 763, 929
LweI	GCATC	3 cut(s)	55, 543, 844
MaeI	CTAG	1 cut(s)	621
MaeIII	GTNAC	4 cut(s)	104, 370, 670, 992
MalI	GATC	2 cut(s)	366, 639
MboI	GATC	2 cut(s)	364, 637
MluCI	AATT	7 cut(s)	175, 227, 360, 500, 588, 715, 936
MluI	ACGCGT	1 cut(s)	834
MlyI	GAGTC	1 cut(s)	212
MmeI	TCCRAC	1 cut(s)	869
MroXI	GAANNNNTTC	1 cut(s)	588
MslI	CAYNNNNRTG	1 cut(s)	988
MspA1I	CMGCKG	1 cut(s)	652
MspR9I	CCNGG	1 cut(s)	291
Mva1269I	GAATGC	2 cut(s)	484, 883
MvaI	CCWGG	1 cut(s)	291
MvnI	CGCG	2 cut(s)	80, 836
MwoI	GCNNNNNNNGC	1 cut(s)	1019
NcoI	CCATGG	1 cut(s)	1014
NdeII	GATC	2 cut(s)	364, 637
NlaIV	GGNNCC	1 cut(s)	585
NmuCI	GTSAC	2 cut(s)	670, 992
NsbI	TGCGCA	1 cut(s)	780
NspI	RCATGY	1 cut(s)	901
PagI	TCATGA	1 cut(s)	727
PaqCI	CACCTGC	1 cut(s)	252
PceI	AGGCCT	4 cut(s)	10, 187, 680, 803
PciI	ACATGT	1 cut(s)	897
PctI	GAATGC	2 cut(s)	484, 883
PdmI	GAANNNNTTC	1 cut(s)	588
PfeI	GAWTC	1 cut(s)	701
PflMI	CCANNNNNTGG	1 cut(s)	1060
PkrI	GCNGC	5 cut(s)	30, 260, 654, 778, 919
PleI	GAGTC	1 cut(s)	211
PpsI	GAGTC	1 cut(s)	211
PscI	ACATGT	1 cut(s)	897
Psp6I	CCWGG	1 cut(s)	289
PspGI	CCWGG	1 cut(s)	289
PspN4I	GGNNCC	1 cut(s)	585
PstI	CTGCAG	2 cut(s)	657, 801
PvuII	CAGCTG	1 cut(s)	652
RsaI	GTAC	1 cut(s)	722
RsaNI	GTAC	1 cut(s)	721
RseI	CAYNNNNRTG	1 cut(s)	988
SatI	GCNGC	5 cut(s)	29, 259, 653, 777, 918
Sau3AI	GATC	2 cut(s)	364, 637
SbfI	CCTGCAGG	1 cut(s)	801
SchI	GAGTC	1 cut(s)	212
ScrFI	CCNGG	1 cut(s)	291
SdaI	CCTGCAGG	1 cut(s)	801
SfaNI	GCATC	3 cut(s)	55, 543, 844
SfcI	CTRYAG	2 cut(s)	653, 797
SmiMI	CAYNNNNRTG	1 cut(s)	988
SmlI	CTYRAG	3 cut(s)	194, 604, 858
SmoI	CTYRAG	3 cut(s)	194, 604, 858
Sse8387I	CCTGCAGG	1 cut(s)	801
Sse9I	AATT	7 cut(s)	175, 227, 360, 500, 588, 715, 936
SseBI	AGGCCT	4 cut(s)	10, 187, 680, 803
SsiI	CCGC	1 cut(s)	401
SspMI	CTAG	1 cut(s)	621
StuI	AGGCCT	4 cut(s)	10, 187, 680, 803
StyD4I	CCNGG	1 cut(s)	289
StyI	CCWWGG	1 cut(s)	1014
TaaI	ACNGT	2 cut(s)	599, 998
TaqI	TCGA	3 cut(s)	89, 890, 911
TasI	AATT	7 cut(s)	175, 227, 360, 500, 588, 715, 936
TatI	WGTACW	1 cut(s)	720
TfiI	GAWTC	1 cut(s)	701
TscAI	CASTG	1 cut(s)	856
TseFI	GTSAC	2 cut(s)	670, 992
TseI	GCWGC	5 cut(s)	28, 258, 652, 776, 917
Tsp45I	GTSAC	2 cut(s)	670, 992
TspDTI	ATGAA	8 cut(s)	233, 501, 506, 716, 744, 759, 984, 990
TspRI	CASTG	1 cut(s)	856
Van91I	CCANNNNNTGG	1 cut(s)	1060
XceI	RCATGY	1 cut(s)	901
XmnI	GAANNNNTTC	1 cut(s)	588
XspI	CTAG	1 cut(s)	621

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.