Rw6G038870
MYB Family

SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr6
OG0017611
Physical Location & Seq
Reverse (-)
62962080 .. 62963568
1489 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw6G038870.1

Sequence Viewer

Length: 927 bp
ATGGGTAGAGGTCCTCGGTGTTCTAAGGATGGACTCAACAAAGGGGCTTGGATGGCAGCCGAAGACAAATTGCTCTTGGATTACATCAAGAACCACGGTGAAGGCAAATGGAGCAATGTTGCCAAAGAAACAGGTCTTAAGAGATGCGGGAAGAGCTGCCGGCTTCGGTGGATGAACTATCTGAGACCAGATATTAAGAGAGGCAGCATTTCAGATGATGAAGAAGAACTAATCATCAGACTCCATAAGCTCCTAGGCAACAGATGGTCTCTGATAGCAGGAAGACTTCCCGGGCGAACAGACAATGAAATCAAGAATTACTGGAACTCCAACTTAGCCAAGAAAATGGCACAAGCTCAAAGTTCACCTCAGTCCAAATGCAATAATGTCATTGTCCAGCAAACCCCTGACCAGCCGCAGCCGCAGCCGCAGCAGCAATGCAGTAGGGTCAGCACTGTCGTTCCCCCGCGGCCACCTACTAGTACTACTGCTGCAGCTAGTCCACTTCATCATAGAACCCTTGATGACTTCTGTAATAATGTGGCCATCAATAATACCAACAACTTGATCAAGGCTGTTAATTCTGTCGACTCACGAATCTCCAGCGAAGATGTTTCACTATCTACAACAACCACTACTAATACTACTAGCGATGGTGATGATCAGTTAGGAAGTTCGCCAACGAATTTTATGATGGATTTCAACACTGATGATCACGAGGACTTCTGCAAAATACTGGACTGTGACTTTGCAAATCTGAACAATGCCATTGATGGAGATGATGAGCATCAAGGTAGTCCGGTTTTAGTACTACCTAAGCAGATGATGGACAAGAATATTCAAGCTGCTGATTTTGGGTCCTTGGCTTCATTTCTGGAGTCTGATGAGGATTGGCTTGGGAATGATCTAAATGTCATGTTGAGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-binding

Protein Analysis

308

Amino Acids

34.18

Weight (kDa)

5.3

Isoelectric Point (pI)

44.5

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-binding PF00249 14 - 61 2e-15 Myb-like DNA-binding domain
Myb_DNA-bind_6 PF13921 17 - 76 1.5e-12 Myb-like DNA-binding domain
Myb_DNA-binding PF00249 67 - 112 2.7e-16 Myb-like DNA-binding domain
Myb_DNA-bind_6 PF13921 71 - 120 1.4e-07 Myb-like DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017611)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g36950 FvH4_2g36950
rosa_chinensis RchiOBHm_Chr6g0304811
rosa_laevigata RLG00000010947
rosa_multiflora Rmu_sc0003120.1_g000001
rosa_roxburghii Rroxscaffold_7G00163450
rosa_rugosa Rorug06G0335000
rosa_samantha Rh6AG446700 Rh6BG454900 Rh6CG460200 Rh6DG447100
rosa_wichuraiana Rw6G038870

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 588
AccII CGCG 1 cut(s) 469
AciI CCGC 6 cut(s) 147, 416, 422, 428, 467, 469
AcoI YGGCCR 2 cut(s) 470, 543
AcsI RAATTY 1 cut(s) 685
AfaI GTAC 2 cut(s) 484, 810
AflII CTTAAG 1 cut(s) 137
AgsI TTSAA 2 cut(s) 703, 842
AhlI ACTAGT 1 cut(s) 479
AluBI AGCT 5 cut(s) 156, 250, 356, 497, 845
AluI AGCT 5 cut(s) 156, 250, 356, 497, 845
Alw26I GTCTC 2 cut(s) 178, 273
Ama87I CYCGRG 1 cut(s) 290
AoxI GGCC 2 cut(s) 470, 543
ApoI RAATTY 1 cut(s) 685
ArsI GACNNNNNNTTYG 2 cut(s) 731, 763
AspA2I CCTAGG 1 cut(s) 253
AspS9I GGNCC 2 cut(s) 11, 858
AsuC2I CCSGG 2 cut(s) 291, 292
AsuHPI GGTGA 3 cut(s) 110, 357, 668
AvaI CYCGRG 1 cut(s) 290
AvaII GGWCC 2 cut(s) 11, 858
AvrII CCTAGG 1 cut(s) 253
BalI TGGCCA 1 cut(s) 545
BauI CACGAG 1 cut(s) 716
BbsI GAAGAC 2 cut(s) 69, 289
BccI CCATC 8 cut(s) 23, 46, 258, 554, 647, 688, 767, 820
BclI TGATCA 3 cut(s) 567, 661, 712
BcnI CCSGG 2 cut(s) 291, 292
BcoDI GTCTC 2 cut(s) 178, 273
BcuI ACTAGT 1 cut(s) 479
BfaI CTAG 4 cut(s) 254, 480, 498, 648
BfmI CTRYAG 1 cut(s) 492
BfrI CTTAAG 1 cut(s) 137
BlnI CCTAGG 1 cut(s) 253
BmcAI AGTACT 2 cut(s) 484, 810
Bme1390I CCNGG 2 cut(s) 291, 292
Bme18I GGWCC 2 cut(s) 11, 858
BmeT110I CYCGRG 1 cut(s) 290
BmgT120I GGNCC 2 cut(s) 11, 858
BmiI GGNNCC 1 cut(s) 859
BmrFI CCNGG 2 cut(s) 291, 292
BmsI GCATC 2 cut(s) 134, 796
BpiI GAAGAC 2 cut(s) 69, 289
BpmI CTGGAG 2 cut(s) 586, 896
Bpu10I CCTNAGC 1 cut(s) 816
BpuMI CCSGG 2 cut(s) 291, 292
BsaBI GATNNNNATC 1 cut(s) 786
BsaI GGTCTC 2 cut(s) 178, 273
BsaJI CCNNGG 6 cut(s) 14, 94, 253, 290, 467, 861
BsaWI WCCGGW 1 cut(s) 799
BsaXI ACNNNNNCTCC 2 cut(s) 311, 341
Bse118I RCCGGY 1 cut(s) 159
Bse1I ACTGG 2 cut(s) 326, 741
Bse3DI GCAATG 2 cut(s) 121, 443
Bse8I GATNNNNATC 1 cut(s) 786
BseDI CCNNGG 6 cut(s) 14, 94, 253, 290, 467, 861
BseGI GGATG 3 cut(s) 34, 57, 177
BseJI GATNNNNATC 1 cut(s) 786
BseMI GCAATG 2 cut(s) 121, 443
BseMII CTCAG 2 cut(s) 173, 383
BseNI ACTGG 2 cut(s) 326, 741
Bsh1236I CGCG 1 cut(s) 469
BshFI GGCC 2 cut(s) 472, 545
BsiHKCI CYCGRG 1 cut(s) 290
BsiSI CCGG 3 cut(s) 160, 291, 800
BsmAI GTCTC 2 cut(s) 178, 273
BsnI GGCC 2 cut(s) 472, 545
Bso31I GGTCTC 2 cut(s) 178, 273
BsoBI CYCGRG 1 cut(s) 290
Bsp143I GATC 4 cut(s) 567, 661, 712, 904
BspACI CCGC 6 cut(s) 147, 416, 422, 428, 467, 469
BspANI GGCC 2 cut(s) 472, 545
BspCNI CTCAG 2 cut(s) 174, 382
BspFNI CGCG 1 cut(s) 469
BspLI GGNNCC 1 cut(s) 859
BspMAI CTGCAG 1 cut(s) 496
BspQI GCTCTTC 1 cut(s) 146
BspTI CTTAAG 1 cut(s) 137
BspTNI GGTCTC 2 cut(s) 178, 273
BsrDI GCAATG 2 cut(s) 121, 443
BsrFI RCCGGY 1 cut(s) 159
BsrI ACTGG 2 cut(s) 326, 741
BssAI RCCGGY 1 cut(s) 159
BssECI CCNNGG 6 cut(s) 14, 94, 253, 290, 467, 861
BssMI GATC 4 cut(s) 567, 661, 712, 904
BssSI CACGAG 1 cut(s) 716
BssT1I CCWWGG 2 cut(s) 253, 861
Bst2BI CACGAG 1 cut(s) 716
Bst4CI ACNGT 3 cut(s) 98, 457, 743
Bst6I CTCTTC 1 cut(s) 146
BstAFI CTTAAG 1 cut(s) 137
BstC8I GCNNGC 1 cut(s) 161
BstDEI CTNAG 5 cut(s) 24, 182, 334, 369, 816
BstDSI CCRYGG 2 cut(s) 94, 467
BstF5I GGATG 3 cut(s) 34, 57, 177
BstFNI CGCG 1 cut(s) 469
BstKTI GATC 4 cut(s) 570, 664, 715, 907
BstMAI GTCTC 2 cut(s) 178, 273
BstMBI GATC 4 cut(s) 567, 661, 712, 904
BstMWI GCNNNNNNNGC 8 cut(s) 53, 111, 153, 421, 424, 427, 430, 433
BstSCI CCNGG 2 cut(s) 289, 290
BstSFI CTRYAG 1 cut(s) 492
BstUI CGCG 1 cut(s) 469
BstV2I GAAGAC 2 cut(s) 69, 289
BstXI CCANNNNNNTGG 1 cut(s) 346
BsuRI GGCC 2 cut(s) 472, 545
BtgI CCRYGG 2 cut(s) 94, 467
BtgZI GCGATG 1 cut(s) 666
BtsCI GGATG 3 cut(s) 34, 57, 177
BtsIMutI CAGTG 2 cut(s) 453, 705
Cac8I GCNNGC 1 cut(s) 161
Cfr10I RCCGGY 1 cut(s) 159
Cfr13I GGNCC 2 cut(s) 11, 858
Cfr42I CCGCGG 1 cut(s) 470
Cfr9I CCCGGG 1 cut(s) 290
Csp6I GTAC 2 cut(s) 483, 809
CviAII CATG 1 cut(s) 916
CviQI GTAC 2 cut(s) 483, 809
DdeI CTNAG 5 cut(s) 24, 182, 334, 369, 816
DpnI GATC 4 cut(s) 569, 663, 714, 906
DpnII GATC 4 cut(s) 567, 661, 712, 904
EaeI YGGCCR 2 cut(s) 470, 543
Eam1104I CTCTTC 1 cut(s) 146
EarI CTCTTC 1 cut(s) 146
Eco130I CCWWGG 2 cut(s) 253, 861
Eco31I GGTCTC 2 cut(s) 178, 273
Eco47I GGWCC 2 cut(s) 11, 858
Eco88I CYCGRG 1 cut(s) 290
EcoO109I RGGNCCY 2 cut(s) 11, 858
EcoT14I CCWWGG 2 cut(s) 253, 861
ErhI CCWWGG 2 cut(s) 253, 861
FaeI CATG 1 cut(s) 919
FaiI YATR 4 cut(s) 246, 513, 692, 917
FatI CATG 1 cut(s) 915
FauI CCCGC 2 cut(s) 140, 474
FbaI TGATCA 3 cut(s) 567, 661, 712
FblI GTMKAC 1 cut(s) 588
FokI GGATG 3 cut(s) 41, 64, 184
FspBI CTAG 4 cut(s) 254, 480, 498, 648
GsuI CTGGAG 2 cut(s) 586, 896
HaeIII GGCC 2 cut(s) 472, 545
HapII CCGG 3 cut(s) 160, 291, 800
Hin1II CATG 1 cut(s) 919
HincII GTYRAC 1 cut(s) 589
HindII GTYRAC 1 cut(s) 589
HinfI GANTC 5 cut(s) 33, 240, 590, 597, 878
HpaII CCGG 3 cut(s) 160, 291, 800
HphI GGTGA 3 cut(s) 110, 357, 668
Hpy166II GTNNAC 3 cut(s) 365, 503, 589
Hpy188I TCNGA 6 cut(s) 183, 214, 239, 273, 759, 883
Hpy188III TCNNGA 5 cut(s) 88, 313, 594, 716, 875
Hpy8I GTNNAC 3 cut(s) 365, 503, 589
HpyAV CCTTC 1 cut(s) 95
HpyCH4III ACNGT 3 cut(s) 98, 457, 743
HpyCH4V TGCA 5 cut(s) 381, 441, 494, 729, 752
HpyF10VI GCNNNNNNNGC 8 cut(s) 53, 111, 153, 421, 424, 427, 430, 433
HpyF3I CTNAG 5 cut(s) 24, 182, 334, 369, 816
Hsp92II CATG 1 cut(s) 919
KroI GCCGGC 1 cut(s) 159
KroNI GCCGGC 1 cut(s) 161
Ksp22I TGATCA 3 cut(s) 567, 661, 712
KspI CCGCGG 1 cut(s) 470
Kzo9I GATC 4 cut(s) 567, 661, 712, 904
LguI GCTCTTC 1 cut(s) 146
LmnI GCTCC 2 cut(s) 111, 255
LweI GCATC 2 cut(s) 134, 796
MaeI CTAG 4 cut(s) 254, 480, 498, 648
MaeIII GTNAC 1 cut(s) 743
MalI GATC 4 cut(s) 569, 663, 714, 906
MboI GATC 4 cut(s) 567, 661, 712, 904
MboII GAAGA 6 cut(s) 74, 163, 233, 236, 294, 620
MlsI TGGCCA 1 cut(s) 545
MluCI AATT 4 cut(s) 68, 316, 580, 685
MluNI TGGCCA 1 cut(s) 545
MlyI GAGTC 4 cut(s) 27, 234, 584, 887
MmeI TCCRAC 1 cut(s) 354
MnlI CCTC 5 cut(s) 24, 194, 378, 712, 880
Mox20I TGGCCA 1 cut(s) 545
MroNI GCCGGC 1 cut(s) 159
MscI TGGCCA 1 cut(s) 545
MseI TTAA 4 cut(s) 138, 195, 579, 925
Msp20I TGGCCA 1 cut(s) 545
MspA1I CMGCKG 1 cut(s) 469
MspCI CTTAAG 1 cut(s) 137
MspI CCGG 3 cut(s) 160, 291, 800
MspR9I CCNGG 2 cut(s) 291, 292
MvnI CGCG 1 cut(s) 469
MwoI GCNNNNNNNGC 8 cut(s) 53, 111, 153, 421, 424, 427, 430, 433
NaeI GCCGGC 1 cut(s) 161
NciI CCSGG 2 cut(s) 291, 292
NdeII GATC 4 cut(s) 567, 661, 712, 904
NgoMIV GCCGGC 1 cut(s) 159
NlaIII CATG 1 cut(s) 919
NlaIV GGNNCC 1 cut(s) 859
NmuCI GTSAC 1 cut(s) 743
PciSI GCTCTTC 1 cut(s) 146
PdiI GCCGGC 1 cut(s) 161
PfeI GAWTC 1 cut(s) 597
PleI GAGTC 4 cut(s) 27, 234, 584, 886
PpsI GAGTC 4 cut(s) 27, 234, 584, 886
PpuMI RGGWCCY 2 cut(s) 11, 858
Psp5II RGGWCCY 2 cut(s) 11, 858
PspN4I GGNNCC 1 cut(s) 859
PspPI GGNCC 2 cut(s) 11, 858
PspPPI RGGWCCY 2 cut(s) 11, 858
PstI CTGCAG 1 cut(s) 496
RsaI GTAC 2 cut(s) 484, 810
RsaNI GTAC 2 cut(s) 483, 809
SacII CCGCGG 1 cut(s) 470
SalI GTCGAC 1 cut(s) 587
SapI GCTCTTC 1 cut(s) 146
SaqAI TTAA 4 cut(s) 138, 195, 579, 925
Sau3AI GATC 4 cut(s) 567, 661, 712, 904
Sau96I GGNCC 2 cut(s) 11, 858
ScaI AGTACT 2 cut(s) 484, 810
SchI GAGTC 4 cut(s) 27, 234, 584, 887
ScrFI CCNGG 2 cut(s) 291, 292
SfaNI GCATC 2 cut(s) 134, 796
SfcI CTRYAG 1 cut(s) 492
Sfr303I CCGCGG 1 cut(s) 470
SgrBI CCGCGG 1 cut(s) 470
SinI GGWCC 2 cut(s) 11, 858
SmaI CCCGGG 1 cut(s) 292
SmlI CTYRAG 1 cut(s) 137
SmoI CTYRAG 1 cut(s) 137
SpeI ACTAGT 1 cut(s) 479
Sse9I AATT 4 cut(s) 68, 316, 580, 685
SsiI CCGC 6 cut(s) 147, 416, 422, 428, 467, 469
SspI AATATT 1 cut(s) 838
SspMI CTAG 4 cut(s) 254, 480, 498, 648
StyD4I CCNGG 2 cut(s) 289, 290
StyI CCWWGG 2 cut(s) 253, 861
TaaI ACNGT 3 cut(s) 98, 457, 743
TaqI TCGA 1 cut(s) 588
TasI AATT 4 cut(s) 68, 316, 580, 685
TatI WGTACW 2 cut(s) 482, 808
TauI GCSGC 4 cut(s) 418, 424, 430, 472
TfiI GAWTC 1 cut(s) 597
Tru1I TTAA 4 cut(s) 138, 195, 579, 925
Tru9I TTAA 4 cut(s) 138, 195, 579, 925
TscAI CASTG 2 cut(s) 460, 712
TseFI GTSAC 1 cut(s) 743
Tsp45I GTSAC 1 cut(s) 743
TspDTI ATGAA 5 cut(s) 188, 234, 321, 497, 858
TspMI CCCGGG 1 cut(s) 290
TspRI CASTG 2 cut(s) 460, 712
Vha464I CTTAAG 1 cut(s) 137
VpaK11BI GGWCC 2 cut(s) 11, 858
XapI RAATTY 1 cut(s) 685
XmaI CCCGGG 1 cut(s) 290
XmaJI CCTAGG 1 cut(s) 253
XmiI GTMKAC 1 cut(s) 588
XspI CTAG 4 cut(s) 254, 480, 498, 648
ZrmI AGTACT 2 cut(s) 484, 810
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.