Rorug06G0335000
MYB Family

SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000006
OG0017611
Physical Location & Seq
Forward (+)
48734472 .. 48735752
1281 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug06G0335000.1

Sequence Viewer

Length: 1281 bp
ATGAGAATCACTTATAGCAAGGGAATCGCTACTGTTACATTCGATTCTCAGCGTCTCTTAACTATATTCCCAATAGATGATCTCCCCGACATTGTTTTGGTTGACATCCTTTGTCGACTTCCATGGAAGTTTGTTCTTCAATGCAAGTGTGTCTGCAGATCTTGGTTGGCTCTCATCTCCCATCCTTATTTCAATAGCCGTCGTGCTCTATATCTCCGAAACCATTGTGATGACGACGAGCAAACTCTGATGTTCGTCAAAATTTCAAGGCCTGAACATCGCGCAAGAGAACTCTTTACAATTTCAAAGCAGACTCCTCCGGTGTTAACAACACTCAATTTTCTTCCCAGGAGCCTCATCCATTCTTTGGATATAGAGCTGGTTGTTGTAGCCACGTACAATGACTTGATTTTGTTGTGTGAAACATGGGGTTTTCAAAGGAAGTACAAGTACTACATCTGCAATATATACACCAAGCAATGGGTTGCTGTTCCTCCTACCATTCAATTCCCCCGGCCAGATGTAGTCCGTGTAGGTGTGGGATTTATATGTGATTCCGACTATAGGTGCCTGATTGTACGACTCATTCAGTTTGAAGCAGAACCTGGCTTCCGATTAAAGGTGGAGATGTTCTCTTCCGAGACTGGTAAATGGACAGAATCAGTTGTCCTATGCCCGCAAGGGTCTAGACCTGCTGATCTCAAGCCCATTACACCAGCCCTTGCTTACGATGGAACCCTGTACTGGTTAGGTCATGGTGGCTTTCTTATTGGGTTGGAACCTTTCAAGCTCAACCATAACCATCATTGTCGTTTTATTTCCAGGCTTCCTGTAAACTTTCGTGAACTTCCCACCGAGTGCCTGGGTGTGTGCCGGGGTTGTGTGAGGTTGTGCCGGTTGTATGTAAATCATTCGACTCTTGATGTCTGGGAGCTGAAAGAAGATGATGATCGTGAGGTGGAAGATGATGATCGTGAGGTGGATGAAGTTGGAGGCAAAATGATGAAATGGTGTTTGAAAGAGAGGGTCATCGTGGACCAAACTTTTTTGCGGAGTCCCGAGCTTCTGGCTTTGGACCCAAATGATGAAGATATATTGTACCTACGATGTTCTAACTACCGTGAGGCAAAGATTGTAACGTACGATATTCGTACAATGAAGGTGATTGACATCTCTCGAAAGTTTCCATGTACTGATTTTCACATAGATGCCTTTCCATTTATGCTCCCATGGTGGCAGTGGCCAACCCCAGTTCCTAGACTAGACTGCCACACCAATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-binding

Protein Analysis

426

Amino Acids

49.88

Weight (kDa)

6.43

Isoelectric Point (pI)

40.64

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
b-prop_At3g26010-like PF24750 124 - 389 1.5e-16 F-box protein At3g26010-like, beta-propeller
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017611)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g36950 FvH4_2g36950
rosa_chinensis RchiOBHm_Chr6g0304811
rosa_laevigata RLG00000010947
rosa_multiflora Rmu_sc0003120.1_g000001
rosa_roxburghii Rroxscaffold_7G00163450
rosa_rugosa Rorug06G0335000
rosa_samantha Rh6AG446700 Rh6BG454900 Rh6CG460200 Rh6DG447100
rosa_wichuraiana Rw6G038870

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 700
AccB1I GGYRCC 1 cut(s) 567
AccB7I CCANNNNNTGG 2 cut(s) 367, 480
AccI GTMKAC 1 cut(s) 115
AccII CGCG 1 cut(s) 282
AciI CCGC 2 cut(s) 677, 1051
AcoI YGGCCR 2 cut(s) 515, 1241
AcsI RAATTY 1 cut(s) 261
AdeI CACNNNGTG 1 cut(s) 858
AfaI GTAC 9 cut(s) 398, 446, 452, 579, 743, 1100, 1142, 1153, 1192
AfiI CCNNNNNNNGG 5 cut(s) 367, 480, 564, 619, 744
AgsI TTSAA 9 cut(s) 140, 193, 267, 306, 437, 506, 596, 787, 1018
AjnI CCWGG 4 cut(s) 347, 604, 821, 861
AloI GAACNNNNNNTCC 2 cut(s) 594, 626
AluBI AGCT 4 cut(s) 379, 790, 934, 1063
AluI AGCT 4 cut(s) 379, 790, 934, 1063
Alw21I GWGCWC 1 cut(s) 208
Alw26I GTCTC 2 cut(s) 59, 635
AlwNI CAGNNNCTG 1 cut(s) 605
Ama87I CYCGRG 1 cut(s) 1058
AoxI GGCC 3 cut(s) 269, 515, 1241
ApoI RAATTY 1 cut(s) 261
AspLEI GCGC 1 cut(s) 284
AspS9I GGNCC 2 cut(s) 1036, 1075
AsuC2I CCSGG 2 cut(s) 514, 875
AsuHPI GGTGA 1 cut(s) 1174
AvaI CYCGRG 1 cut(s) 1058
AvaII GGWCC 2 cut(s) 1036, 1075
BalI TGGCCA 1 cut(s) 1243
BanI GGYRCC 1 cut(s) 567
BarI GAAGNNNNNNTAC 2 cut(s) 434, 466
Bbv12I GWGCWC 1 cut(s) 208
BccI CCATC 3 cut(s) 189, 725, 810
BceAI ACGGC 1 cut(s) 183
BcgI CGANNNNNNTGC 2 cut(s) 7, 41
BciT130I CCWGG 4 cut(s) 349, 606, 823, 863
BcnI CCSGG 2 cut(s) 514, 875
BcoDI GTCTC 2 cut(s) 59, 635
BfaI CTAG 3 cut(s) 687, 1257, 1262
BfmI CTRYAG 2 cut(s) 154, 562
BfuAI ACCTGC 1 cut(s) 700
BglII AGATCT 1 cut(s) 158
BmcAI AGTACT 1 cut(s) 452
Bme1390I CCNGG 6 cut(s) 349, 514, 606, 823, 863, 875
Bme18I GGWCC 2 cut(s) 1036, 1075
BmeT110I CYCGRG 1 cut(s) 1058
BmgT120I GGNCC 2 cut(s) 1036, 1075
BmiI GGNNCC 5 cut(s) 353, 569, 736, 780, 1077
BmrFI CCNGG 6 cut(s) 349, 514, 606, 823, 863, 875
BmrI ACTGGG 1 cut(s) 1244
BmsI GCATC 1 cut(s) 1198
BmuI ACTGGG 1 cut(s) 1244
BplI GAGNNNNNCTC 2 cut(s) 617, 649
BpuEI CTTGAG 1 cut(s) 686
BpuMI CCSGG 2 cut(s) 514, 875
BsaAI YACGTR 1 cut(s) 396
BsaBI GATNNNNATC 3 cut(s) 948, 969, 1169
BsaJI CCNNGG 6 cut(s) 122, 347, 512, 862, 874, 1229
BsaWI WCCGGW 1 cut(s) 319
Bsc4I CCNNNNNNNGG 5 cut(s) 367, 480, 564, 619, 744
Bse118I RCCGGY 1 cut(s) 894
Bse1I ACTGG 3 cut(s) 649, 749, 1250
Bse3DI GCAATG 1 cut(s) 485
Bse8I GATNNNNATC 3 cut(s) 948, 969, 1169
BseBI CCWGG 4 cut(s) 349, 606, 823, 863
BseDI CCNNGG 6 cut(s) 122, 347, 512, 862, 874, 1229
BseGI GGATG 4 cut(s) 105, 181, 357, 988
BseJI GATNNNNATC 3 cut(s) 948, 969, 1169
BseLI CCNNNNNNNGG 5 cut(s) 367, 480, 564, 619, 744
BseMI GCAATG 1 cut(s) 485
BseMII CTCAG 1 cut(s) 62
BseNI ACTGG 3 cut(s) 649, 749, 1250
BseRI GAGGAG 1 cut(s) 306
Bsh1236I CGCG 1 cut(s) 282
BshFI GGCC 3 cut(s) 271, 517, 1243
BshNI GGYRCC 1 cut(s) 567
BsiHKAI GWGCWC 1 cut(s) 208
BsiHKCI CYCGRG 1 cut(s) 1058
BsiSI CCGG 4 cut(s) 320, 514, 874, 895
BsiWI CGTACG 1 cut(s) 1140
BslFI GGGAC 1 cut(s) 1041
BslI CCNNNNNNNGG 5 cut(s) 367, 480, 564, 619, 744
BsmAI GTCTC 2 cut(s) 59, 635
BsmBI CGTCTC 1 cut(s) 59
BsmFI GGGAC 1 cut(s) 1041
BsnI GGCC 3 cut(s) 271, 517, 1243
BsoBI CYCGRG 1 cut(s) 1058
Bsp1286I GDGCHC 1 cut(s) 208
Bsp143I GATC 5 cut(s) 79, 158, 697, 949, 970
Bsp19I CCATGG 2 cut(s) 122, 1229
BspACI CCGC 2 cut(s) 677, 1051
BspANI GGCC 3 cut(s) 271, 517, 1243
BspCNI CTCAG 1 cut(s) 61
BspFNI CGCG 1 cut(s) 282
BspLI GGNNCC 5 cut(s) 353, 569, 736, 780, 1077
BspMAI CTGCAG 1 cut(s) 158
BspMI ACCTGC 1 cut(s) 700
BspT107I GGYRCC 1 cut(s) 567
BsrDI GCAATG 1 cut(s) 485
BsrFI RCCGGY 1 cut(s) 894
BsrI ACTGG 3 cut(s) 649, 749, 1250
BssAI RCCGGY 1 cut(s) 894
BssECI CCNNGG 6 cut(s) 122, 347, 512, 862, 874, 1229
BssMI GATC 5 cut(s) 79, 158, 697, 949, 970
BssT1I CCWWGG 2 cut(s) 122, 1229
Bst2UI CCWGG 4 cut(s) 349, 606, 823, 863
Bst4CI ACNGT 2 cut(s) 34, 1121
Bst6I CTCTTC 1 cut(s) 640
BstBAI YACGTR 1 cut(s) 396
BstC8I GCNNGC 1 cut(s) 677
BstDEI CTNAG 1 cut(s) 48
BstDSI CCRYGG 2 cut(s) 122, 1229
BstF5I GGATG 4 cut(s) 105, 181, 357, 988
BstFNI CGCG 1 cut(s) 282
BstHHI GCGC 1 cut(s) 284
BstKTI GATC 5 cut(s) 82, 161, 700, 952, 973
BstMAI GTCTC 2 cut(s) 59, 635
BstMBI GATC 5 cut(s) 79, 158, 697, 949, 970
BstNI CCWGG 4 cut(s) 349, 606, 823, 863
BstSCI CCNGG 6 cut(s) 347, 512, 604, 821, 861, 873
BstSFI CTRYAG 2 cut(s) 154, 562
BstUI CGCG 1 cut(s) 282
BstX2I RGATCY 1 cut(s) 158
BstYI RGATCY 1 cut(s) 158
BsuRI GGCC 3 cut(s) 271, 517, 1243
BtgI CCRYGG 2 cut(s) 122, 1229
BtgZI GCGATG 1 cut(s) 263
BtsCI GGATG 4 cut(s) 105, 181, 357, 988
BtsI GCAGTG 1 cut(s) 1244
BtsIMutI CAGTG 1 cut(s) 1244
BveI ACCTGC 1 cut(s) 700
Cac8I GCNNGC 1 cut(s) 677
CaiI CAGNNNCTG 1 cut(s) 605
CfoI GCGC 1 cut(s) 284
Cfr10I RCCGGY 1 cut(s) 894
Cfr13I GGNCC 2 cut(s) 1036, 1075
CseI GACGC 1 cut(s) 41
Csp6I GTAC 9 cut(s) 397, 445, 451, 578, 742, 1099, 1141, 1152, 1191
CviAII CATG 5 cut(s) 123, 426, 755, 1188, 1230
CviQI GTAC 9 cut(s) 397, 445, 451, 578, 742, 1099, 1141, 1152, 1191
DdeI CTNAG 1 cut(s) 48
DpnI GATC 5 cut(s) 81, 160, 699, 951, 972
DpnII GATC 5 cut(s) 79, 158, 697, 949, 970
DraIII CACNNNGTG 1 cut(s) 858
EaeI YGGCCR 2 cut(s) 515, 1241
Eam1104I CTCTTC 1 cut(s) 640
EarI CTCTTC 1 cut(s) 640
Eco130I CCWWGG 2 cut(s) 122, 1229
Eco147I AGGCCT 1 cut(s) 271
Eco47I GGWCC 2 cut(s) 1036, 1075
Eco88I CYCGRG 1 cut(s) 1058
EcoRII CCWGG 4 cut(s) 347, 604, 821, 861
EcoT14I CCWWGG 2 cut(s) 122, 1229
ErhI CCWWGG 2 cut(s) 122, 1229
Esp3I CGTCTC 1 cut(s) 59
FaeI CATG 5 cut(s) 126, 429, 758, 1191, 1233
FaqI GGGAC 1 cut(s) 1041
FatI CATG 5 cut(s) 122, 425, 754, 1187, 1229
FauI CCCGC 1 cut(s) 684
FblI GTMKAC 1 cut(s) 115
FokI GGATG 4 cut(s) 92, 168, 344, 995
FspBI CTAG 3 cut(s) 687, 1257, 1262
GlaI GCGC 1 cut(s) 283
HaeIII GGCC 3 cut(s) 271, 517, 1243
HapII CCGG 4 cut(s) 320, 514, 874, 895
HgaI GACGC 1 cut(s) 41
HhaI GCGC 1 cut(s) 284
Hin1II CATG 5 cut(s) 126, 429, 758, 1191, 1233
Hin6I GCGC 1 cut(s) 282
HinP1I GCGC 1 cut(s) 282
HincII GTYRAC 3 cut(s) 103, 116, 327
HindII GTYRAC 3 cut(s) 103, 116, 327
HinfI GANTC 9 cut(s) 6, 24, 44, 313, 554, 582, 659, 916, 1054
HpaI GTTAAC 1 cut(s) 327
HpaII CCGG 4 cut(s) 320, 514, 874, 895
HphI GGTGA 1 cut(s) 1174
Hpy166II GTNNAC 6 cut(s) 103, 116, 327, 835, 845, 1036
Hpy188I TCNGA 5 cut(s) 218, 249, 559, 614, 640
Hpy188III TCNNGA 7 cut(s) 687, 842, 920, 953, 974, 1058, 1176
Hpy8I GTNNAC 6 cut(s) 103, 116, 327, 835, 845, 1036
Hpy99I CGWCG 2 cut(s) 204, 239
HpyAV CCTTC 1 cut(s) 1153
HpyCH4III ACNGT 2 cut(s) 34, 1121
HpyCH4IV ACGT 2 cut(s) 395, 1139
HpyCH4V TGCA 3 cut(s) 144, 156, 462
HpyF3I CTNAG 1 cut(s) 48
HpySE526I ACGT 2 cut(s) 395, 1139
Hsp92II CATG 5 cut(s) 126, 429, 758, 1191, 1233
HspAI GCGC 1 cut(s) 282
KspAI GTTAAC 1 cut(s) 327
Kzo9I GATC 5 cut(s) 79, 158, 697, 949, 970
LmnI GCTCC 3 cut(s) 351, 931, 1230
LweI GCATC 1 cut(s) 1198
MaeI CTAG 3 cut(s) 687, 1257, 1262
MaeII ACGT 2 cut(s) 395, 1139
MaeIII GTNAC 2 cut(s) 34, 1135
MalI GATC 5 cut(s) 81, 160, 699, 951, 972
MboI GATC 5 cut(s) 79, 158, 697, 949, 970
MboII GAAGA 6 cut(s) 128, 335, 627, 953, 974, 1100
MflI RGATCY 1 cut(s) 158
MhlI GDGCHC 1 cut(s) 208
MlsI TGGCCA 1 cut(s) 1243
MluCI AATT 5 cut(s) 261, 300, 337, 506, 1276
MluNI TGGCCA 1 cut(s) 1243
MlyI GAGTC 4 cut(s) 307, 576, 910, 1063
MmeI TCCRAC 3 cut(s) 582, 756, 970
MnlI CCTC 9 cut(s) 327, 365, 504, 879, 949, 970, 986, 1017, 1117
Mox20I TGGCCA 1 cut(s) 1243
MscI TGGCCA 1 cut(s) 1243
MseI TTAA 4 cut(s) 59, 326, 617, 1279
MslI CAYNNNNRTG 2 cut(s) 228, 1206
Msp20I TGGCCA 1 cut(s) 1243
MspI CCGG 4 cut(s) 320, 514, 874, 895
MspR9I CCNGG 6 cut(s) 349, 514, 606, 823, 863, 875
MvaI CCWGG 4 cut(s) 349, 606, 823, 863
MvnI CGCG 1 cut(s) 282
NciI CCSGG 2 cut(s) 514, 875
NcoI CCATGG 2 cut(s) 122, 1229
NdeII GATC 5 cut(s) 79, 158, 697, 949, 970
NlaIII CATG 5 cut(s) 126, 429, 758, 1191, 1233
NlaIV GGNNCC 5 cut(s) 353, 569, 736, 780, 1077
PceI AGGCCT 1 cut(s) 271
PfeI GAWTC 5 cut(s) 6, 24, 44, 554, 659
Pfl23II CGTACG 1 cut(s) 1140
PflMI CCANNNNNTGG 2 cut(s) 367, 480
PleI GAGTC 4 cut(s) 307, 576, 910, 1062
PpsI GAGTC 4 cut(s) 307, 576, 910, 1062
Ppu21I YACGTR 1 cut(s) 396
Psp6I CCWGG 4 cut(s) 347, 604, 821, 861
PspGI CCWGG 4 cut(s) 347, 604, 821, 861
PspLI CGTACG 1 cut(s) 1140
PspN4I GGNNCC 5 cut(s) 353, 569, 736, 780, 1077
PspPI GGNCC 2 cut(s) 1036, 1075
PstI CTGCAG 1 cut(s) 158
PstNI CAGNNNCTG 1 cut(s) 605
PsuI RGATCY 1 cut(s) 158
RsaI GTAC 9 cut(s) 398, 446, 452, 579, 743, 1100, 1142, 1153, 1192
RsaNI GTAC 9 cut(s) 397, 445, 451, 578, 742, 1099, 1141, 1152, 1191
RseI CAYNNNNRTG 2 cut(s) 228, 1206
SalI GTCGAC 1 cut(s) 114
SaqAI TTAA 4 cut(s) 59, 326, 617, 1279
Sau3AI GATC 5 cut(s) 79, 158, 697, 949, 970
Sau96I GGNCC 2 cut(s) 1036, 1075
ScaI AGTACT 1 cut(s) 452
SchI GAGTC 4 cut(s) 307, 576, 910, 1063
ScrFI CCNGG 6 cut(s) 349, 514, 606, 823, 863, 875
SduI GDGCHC 1 cut(s) 208
SfaNI GCATC 1 cut(s) 1198
SfcI CTRYAG 2 cut(s) 154, 562
SinI GGWCC 2 cut(s) 1036, 1075
SmiMI CAYNNNNRTG 2 cut(s) 228, 1206
SmlI CTYRAG 1 cut(s) 701
SmoI CTYRAG 1 cut(s) 701
Sse9I AATT 5 cut(s) 261, 300, 337, 506, 1276
SseBI AGGCCT 1 cut(s) 271
SsiI CCGC 2 cut(s) 677, 1051
SspMI CTAG 3 cut(s) 687, 1257, 1262
StuI AGGCCT 1 cut(s) 271
StyD4I CCNGG 6 cut(s) 347, 512, 604, 821, 861, 873
StyI CCWWGG 2 cut(s) 122, 1229
TaaI ACNGT 2 cut(s) 34, 1121
TaiI ACGT 2 cut(s) 398, 1142
TaqI TCGA 4 cut(s) 42, 115, 914, 1177
TasI AATT 5 cut(s) 261, 300, 337, 506, 1276
TatI WGTACW 4 cut(s) 444, 450, 741, 1190
TfiI GAWTC 5 cut(s) 6, 24, 44, 554, 659
Tru1I TTAA 4 cut(s) 59, 326, 617, 1279
Tru9I TTAA 4 cut(s) 59, 326, 617, 1279
TscAI CASTG 1 cut(s) 1244
TspDTI ATGAA 4 cut(s) 999, 1019, 1101, 1172
TspGWI ACGGA 1 cut(s) 518
TspRI CASTG 1 cut(s) 1244
Van91I CCANNNNNTGG 2 cut(s) 367, 480
VpaK11BI GGWCC 2 cut(s) 1036, 1075
XapI RAATTY 1 cut(s) 261
XbaI TCTAGA 1 cut(s) 686
XcmI CCANNNNNNNNNTGG 2 cut(s) 859, 1236
XmiI GTMKAC 1 cut(s) 115
XspI CTAG 3 cut(s) 687, 1257, 1262
ZrmI AGTACT 1 cut(s) 452
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.