FvH4_2g36950
MYB Family

SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
OG0017611
Physical Location & Seq
Forward (+)
26977666 .. 26980194
2529 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g36950.t2

Sequence Viewer

Length: 930 bp
ATGGGTAGAGGTCCAAGGTGTTCTAAGGATGGACTCAACAAAGGAGCTTGGTTGGAAGCTGAAGATAAATTGCTCTTGGGTTACATCAAGAACCATGGTGAAGGCAAATGGAGCAATGTCGCTAAGGAAACAGGTCTAAAGAGATGTGGGAAGAGCTGCCGACTTCGTTGGATGAACTATCTGAGACCTGATATTAAGAGGGGCAGCATTTCTGATGATGAAGAAGAACTAATCATCAGACTCCATAAGCTCCTAGGCAACAGATGGTCTCTGATAGCCGGAAGACTTCCCGGGCGAACAGACAATGAAATCAAGAATTACTGGAACTCCAACTTGGCCAAGAAAATGGCACAAGCTGCAGCTCAAACTTCATCTCAGTCCAAATGCAATAATGCAATTGTCCAAAGAACCCCTGACGGGACACAGCCACAACAGCAATACAGTAGGGTCAACACTGTCATTCCAACACAGCCACCACCTGCTACAGCTGCTGCAGCAGCTAGTCCTGTTCATCATAGAAGCCTTAATGACTTCTCTAATAGTGTAGCCATGAATAATACCAACGACTTGGTCAAGGCTATTAATTCTGTCGACTCCCATATGTCCAGGGAAGATGGTTCACCATCTACAACAACTACTACTAATACTACTGGCGATGGTGATGATCGTTTGGGAAGTTCGCCGACGAATTTTATGTTGGACTTCAACACTGATGATCATGAGGACTTCTGCAAAATACTGGACTGTGACTTTGCGAATCTGAACAGTGCCATTGATGGAGATGATGATCATCAGGGCAGTCCGGTTTTAGAACTACCTAAGCAGATGATGGACAAGAATATGCAAGCTGCTGATTTTGGGTCTCTGGCTTCATTTCTGGAGTCTGATGAGGATTGGCTTGGGAATGATCTAAATGTCATGTTGAGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-binding

Protein Analysis

310

Amino Acids

34.06

Weight (kDa)

5.41

Isoelectric Point (pI)

39.1

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-binding PF00249 10 - 55 2e-16 Myb-like DNA-binding domain
Myb_DNA-bind_6 PF13921 14 - 62 1.3e-07 Myb-like DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017611)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g36950 FvH4_2g36950
rosa_chinensis RchiOBHm_Chr6g0304811
rosa_laevigata RLG00000010947
rosa_multiflora Rmu_sc0003120.1_g000001
rosa_roxburghii Rroxscaffold_7G00163450
rosa_rugosa Rorug06G0335000
rosa_samantha Rh6AG446700 Rh6BG454900 Rh6CG460200 Rh6DG447100
rosa_wichuraiana Rw6G038870

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 487
Acc36I ACCTGC 1 cut(s) 487
AccI GTMKAC 1 cut(s) 591
AcoI YGGCCR 1 cut(s) 336
AcsI RAATTY 1 cut(s) 688
AcuI CTGAAG 1 cut(s) 81
AfiI CCNNNNNNNGG 1 cut(s) 417
AgsI TTSAA 1 cut(s) 706
AjnI CCWGG 1 cut(s) 605
AjuI GAANNNNNNNTTGG 4 cut(s) 317, 349, 680, 712
AluBI AGCT 9 cut(s) 47, 59, 156, 250, 356, 362, 488, 500, 848
AluI AGCT 9 cut(s) 47, 59, 156, 250, 356, 362, 488, 500, 848
Alw26I GTCTC 3 cut(s) 178, 273, 867
AlwNI CAGNNNCTG 1 cut(s) 491
Ama87I CYCGRG 1 cut(s) 290
AoxI GGCC 1 cut(s) 336
ApeKI GCWGC 9 cut(s) 156, 204, 356, 359, 488, 491, 494, 497, 848
ApoI RAATTY 1 cut(s) 688
ArsI GACNNNNNNTTYG 2 cut(s) 734, 766
AseI ATTAAT 1 cut(s) 582
AspA2I CCTAGG 1 cut(s) 253
AspS9I GGNCC 1 cut(s) 11
AsuC2I CCSGG 2 cut(s) 291, 292
AsuHPI GGTGA 3 cut(s) 110, 612, 671
AvaI CYCGRG 1 cut(s) 290
AvaII GGWCC 1 cut(s) 11
AvrII CCTAGG 1 cut(s) 253
BalI TGGCCA 1 cut(s) 338
BbsI GAAGAC 1 cut(s) 289
BbvI GCAGC 9 cut(s) 143, 216, 343, 371, 475, 478, 506, 509, 835
BccI CCATC 7 cut(s) 23, 258, 608, 631, 650, 770, 823
BciT130I CCWGG 1 cut(s) 607
BclI TGATCA 2 cut(s) 715, 787
BcnI CCSGG 2 cut(s) 291, 292
BcoDI GTCTC 3 cut(s) 178, 273, 867
BfaI CTAG 2 cut(s) 254, 501
BfmI CTRYAG 3 cut(s) 357, 483, 492
BfuAI ACCTGC 1 cut(s) 487
BisI GCNGC 9 cut(s) 157, 205, 357, 360, 489, 492, 495, 498, 849
BlnI CCTAGG 1 cut(s) 253
BlsI GCNGC 9 cut(s) 158, 206, 358, 361, 490, 493, 496, 499, 850
Bme1390I CCNGG 3 cut(s) 291, 292, 607
Bme18I GGWCC 1 cut(s) 11
BmeT110I CYCGRG 1 cut(s) 290
BmgT120I GGNCC 1 cut(s) 11
BmrFI CCNGG 3 cut(s) 291, 292, 607
BpiI GAAGAC 1 cut(s) 289
BpmI CTGGAG 1 cut(s) 899
Bpu10I CCTNAGC 2 cut(s) 123, 819
BpuMI CCSGG 2 cut(s) 291, 292
BsaBI GATNNNNATC 2 cut(s) 786, 789
BsaI GGTCTC 3 cut(s) 178, 273, 867
BsaJI CCNNGG 5 cut(s) 14, 94, 253, 290, 606
BsaWI WCCGGW 1 cut(s) 802
BsaXI ACNNNNNCTCC 2 cut(s) 311, 341
Bsc4I CCNNNNNNNGG 1 cut(s) 417
Bse1I ACTGG 3 cut(s) 326, 655, 744
Bse3DI GCAATG 1 cut(s) 121
Bse8I GATNNNNATC 2 cut(s) 786, 789
BseBI CCWGG 1 cut(s) 607
BseDI CCNNGG 5 cut(s) 14, 94, 253, 290, 606
BseGI GGATG 2 cut(s) 34, 177
BseJI GATNNNNATC 2 cut(s) 786, 789
BseLI CCNNNNNNNGG 1 cut(s) 417
BseMI GCAATG 1 cut(s) 121
BseMII CTCAG 2 cut(s) 173, 389
BseNI ACTGG 3 cut(s) 326, 655, 744
BseXI GCAGC 9 cut(s) 143, 216, 343, 371, 475, 478, 506, 509, 835
BshFI GGCC 1 cut(s) 338
BsiHKCI CYCGRG 1 cut(s) 290
BsiSI CCGG 3 cut(s) 279, 291, 803
BslFI GGGAC 1 cut(s) 433
BslI CCNNNNNNNGG 1 cut(s) 417
BsmAI GTCTC 3 cut(s) 178, 273, 867
BsmFI GGGAC 1 cut(s) 433
BsnI GGCC 1 cut(s) 338
Bso31I GGTCTC 3 cut(s) 178, 273, 867
BsoBI CYCGRG 1 cut(s) 290
Bsp143I GATC 4 cut(s) 664, 715, 787, 907
Bsp19I CCATGG 1 cut(s) 94
BspANI GGCC 1 cut(s) 338
BspCNI CTCAG 2 cut(s) 174, 388
BspHI TCATGA 1 cut(s) 718
BspMAI CTGCAG 2 cut(s) 361, 496
BspMI ACCTGC 1 cut(s) 487
BspQI GCTCTTC 1 cut(s) 146
BspTNI GGTCTC 3 cut(s) 178, 273, 867
BsrDI GCAATG 1 cut(s) 121
BsrI ACTGG 3 cut(s) 326, 655, 744
BssECI CCNNGG 5 cut(s) 14, 94, 253, 290, 606
BssMI GATC 4 cut(s) 664, 715, 787, 907
BssT1I CCWWGG 3 cut(s) 14, 94, 253
Bst2UI CCWGG 1 cut(s) 607
Bst4CI ACNGT 4 cut(s) 443, 457, 746, 767
Bst6I CTCTTC 1 cut(s) 146
BstAPI GCANNNNNTGC 1 cut(s) 356
BstC8I GCNNGC 1 cut(s) 846
BstDEI CTNAG 5 cut(s) 24, 123, 182, 375, 819
BstDSI CCRYGG 1 cut(s) 94
BstF5I GGATG 2 cut(s) 34, 177
BstKTI GATC 4 cut(s) 667, 718, 790, 910
BstMAI GTCTC 3 cut(s) 178, 273, 867
BstMBI GATC 4 cut(s) 664, 715, 787, 907
BstMWI GCNNNNNNNGC 6 cut(s) 111, 356, 433, 488, 494, 497
BstNI CCWGG 1 cut(s) 607
BstSCI CCNGG 3 cut(s) 289, 290, 605
BstSFI CTRYAG 3 cut(s) 357, 483, 492
BstV1I GCAGC 9 cut(s) 143, 216, 343, 371, 475, 478, 506, 509, 835
BstV2I GAAGAC 1 cut(s) 289
BstXI CCANNNNNNTGG 2 cut(s) 346, 568
BsuRI GGCC 1 cut(s) 338
BtgI CCRYGG 1 cut(s) 94
BtgZI GCGATG 1 cut(s) 669
BtsCI GGATG 2 cut(s) 34, 177
BtsIMutI CAGTG 3 cut(s) 453, 708, 772
BveI ACCTGC 1 cut(s) 487
Cac8I GCNNGC 1 cut(s) 846
CaiI CAGNNNCTG 1 cut(s) 491
CciI TCATGA 1 cut(s) 718
Cfr13I GGNCC 1 cut(s) 11
Cfr9I CCCGGG 1 cut(s) 290
CviAII CATG 4 cut(s) 95, 550, 719, 919
DdeI CTNAG 5 cut(s) 24, 123, 182, 375, 819
DpnI GATC 4 cut(s) 666, 717, 789, 909
DpnII GATC 4 cut(s) 664, 715, 787, 907
EaeI YGGCCR 1 cut(s) 336
Eam1104I CTCTTC 1 cut(s) 146
EarI CTCTTC 1 cut(s) 146
Eco130I CCWWGG 3 cut(s) 14, 94, 253
Eco31I GGTCTC 3 cut(s) 178, 273, 867
Eco47I GGWCC 1 cut(s) 11
Eco57I CTGAAG 1 cut(s) 81
Eco88I CYCGRG 1 cut(s) 290
EcoRII CCWGG 1 cut(s) 605
EcoT14I CCWWGG 3 cut(s) 14, 94, 253
ErhI CCWWGG 3 cut(s) 14, 94, 253
FaeI CATG 4 cut(s) 98, 553, 722, 922
FaqI GGGAC 1 cut(s) 433
FatI CATG 4 cut(s) 94, 549, 718, 918
FauNDI CATATG 1 cut(s) 600
FbaI TGATCA 2 cut(s) 715, 787
FblI GTMKAC 1 cut(s) 591
Fnu4HI GCNGC 9 cut(s) 157, 205, 357, 360, 489, 492, 495, 498, 849
FokI GGATG 2 cut(s) 41, 184
Fsp4HI GCNGC 9 cut(s) 157, 205, 357, 360, 489, 492, 495, 498, 849
FspBI CTAG 2 cut(s) 254, 501
GluI GCNGC 9 cut(s) 157, 205, 357, 360, 489, 492, 495, 498, 849
GsuI CTGGAG 1 cut(s) 899
HaeIII GGCC 1 cut(s) 338
HapII CCGG 3 cut(s) 279, 291, 803
Hin1II CATG 4 cut(s) 98, 553, 722, 922
HincII GTYRAC 2 cut(s) 451, 592
HindII GTYRAC 2 cut(s) 451, 592
HinfI GANTC 5 cut(s) 33, 240, 593, 757, 881
HpaII CCGG 3 cut(s) 279, 291, 803
HphI GGTGA 3 cut(s) 110, 612, 671
Hpy166II GTNNAC 3 cut(s) 451, 592, 620
Hpy188I TCNGA 6 cut(s) 183, 214, 239, 273, 762, 886
Hpy188III TCNNGA 4 cut(s) 88, 313, 719, 878
Hpy8I GTNNAC 3 cut(s) 451, 592, 620
Hpy99I CGWCG 1 cut(s) 688
HpyAV CCTTC 1 cut(s) 95
HpyCH4III ACNGT 4 cut(s) 443, 457, 746, 767
HpyCH4V TGCA 6 cut(s) 359, 387, 395, 494, 732, 844
HpyF10VI GCNNNNNNNGC 6 cut(s) 111, 356, 433, 488, 494, 497
HpyF3I CTNAG 5 cut(s) 24, 123, 182, 375, 819
Hsp92II CATG 4 cut(s) 98, 553, 722, 922
Ksp22I TGATCA 2 cut(s) 715, 787
Kzo9I GATC 4 cut(s) 664, 715, 787, 907
LguI GCTCTTC 1 cut(s) 146
LmnI GCTCC 3 cut(s) 44, 111, 255
Lsp1109I GCAGC 9 cut(s) 143, 216, 343, 371, 475, 478, 506, 509, 835
MaeI CTAG 2 cut(s) 254, 501
MaeIII GTNAC 2 cut(s) 80, 746
MalI GATC 4 cut(s) 666, 717, 789, 909
MboI GATC 4 cut(s) 664, 715, 787, 907
MboII GAAGA 6 cut(s) 74, 163, 233, 236, 294, 623
MfeI CAATTG 1 cut(s) 396
MlsI TGGCCA 1 cut(s) 338
MluCI AATT 5 cut(s) 68, 316, 396, 583, 688
MluNI TGGCCA 1 cut(s) 338
MlyI GAGTC 4 cut(s) 27, 234, 587, 890
MmeI TCCRAC 5 cut(s) 33, 149, 354, 488, 678
MnlI CCTC 3 cut(s) 192, 715, 883
Mox20I TGGCCA 1 cut(s) 338
MscI TGGCCA 1 cut(s) 338
MseI TTAA 4 cut(s) 195, 525, 582, 928
Msp20I TGGCCA 1 cut(s) 338
MspA1I CMGCKG 1 cut(s) 488
MspI CCGG 3 cut(s) 279, 291, 803
MspR9I CCNGG 3 cut(s) 291, 292, 607
MunI CAATTG 1 cut(s) 396
MvaI CCWGG 1 cut(s) 607
MwoI GCNNNNNNNGC 6 cut(s) 111, 356, 433, 488, 494, 497
NciI CCSGG 2 cut(s) 291, 292
NcoI CCATGG 1 cut(s) 94
NdeI CATATG 1 cut(s) 600
NdeII GATC 4 cut(s) 664, 715, 787, 907
NlaIII CATG 4 cut(s) 98, 553, 722, 922
NmuCI GTSAC 1 cut(s) 746
PagI TCATGA 1 cut(s) 718
PaqCI CACCTGC 1 cut(s) 487
PciSI GCTCTTC 1 cut(s) 146
PfeI GAWTC 1 cut(s) 757
PflFI GACNNNGTC 1 cut(s) 569
PkrI GCNGC 9 cut(s) 158, 206, 358, 361, 490, 493, 496, 499, 850
PleI GAGTC 4 cut(s) 27, 234, 587, 889
PpsI GAGTC 4 cut(s) 27, 234, 587, 889
PshBI ATTAAT 1 cut(s) 582
Psp6I CCWGG 1 cut(s) 605
PspGI CCWGG 1 cut(s) 605
PspPI GGNCC 1 cut(s) 11
PstI CTGCAG 2 cut(s) 361, 496
PstNI CAGNNNCTG 1 cut(s) 491
PsyI GACNNNGTC 1 cut(s) 569
PvuII CAGCTG 1 cut(s) 488
SalI GTCGAC 1 cut(s) 590
SapI GCTCTTC 1 cut(s) 146
SaqAI TTAA 4 cut(s) 195, 525, 582, 928
SatI GCNGC 9 cut(s) 157, 205, 357, 360, 489, 492, 495, 498, 849
Sau3AI GATC 4 cut(s) 664, 715, 787, 907
Sau96I GGNCC 1 cut(s) 11
SchI GAGTC 4 cut(s) 27, 234, 587, 890
ScrFI CCNGG 3 cut(s) 291, 292, 607
SfcI CTRYAG 3 cut(s) 357, 483, 492
SinI GGWCC 1 cut(s) 11
SmaI CCCGGG 1 cut(s) 292
Sse9I AATT 5 cut(s) 68, 316, 396, 583, 688
SspMI CTAG 2 cut(s) 254, 501
StyD4I CCNGG 3 cut(s) 289, 290, 605
StyI CCWWGG 3 cut(s) 14, 94, 253
TaaI ACNGT 4 cut(s) 443, 457, 746, 767
TaqI TCGA 1 cut(s) 591
TasI AATT 5 cut(s) 68, 316, 396, 583, 688
TfiI GAWTC 1 cut(s) 757
Tru1I TTAA 4 cut(s) 195, 525, 582, 928
Tru9I TTAA 4 cut(s) 195, 525, 582, 928
TscAI CASTG 3 cut(s) 460, 715, 772
TseFI GTSAC 1 cut(s) 746
TseI GCWGC 9 cut(s) 156, 204, 356, 359, 488, 491, 494, 497, 848
Tsp45I GTSAC 1 cut(s) 746
TspDTI ATGAA 7 cut(s) 188, 234, 321, 360, 500, 566, 861
TspMI CCCGGG 1 cut(s) 290
TspRI CASTG 3 cut(s) 460, 715, 772
Tth111I GACNNNGTC 1 cut(s) 569
VpaK11BI GGWCC 1 cut(s) 11
VspI ATTAAT 1 cut(s) 582
XapI RAATTY 1 cut(s) 688
XmaI CCCGGG 1 cut(s) 290
XmaJI CCTAGG 1 cut(s) 253
XmiI GTMKAC 1 cut(s) 591
XspI CTAG 2 cut(s) 254, 501
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.