Rh6CG460200
MYB Family

SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6C
OG0017611
Physical Location & Seq
Reverse (-)
63422702 .. 63424736
2035 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6CG460200.1

Sequence Viewer

Length: 672 bp
ATGTTATTTTGCAGATGGTCTCTGATCGCAGGAAGACTTCCCGGGCGAACAGACAATGAAATCAAGAATTACTGGAACTCCAACTTAGCCAAGAAAATGGCGCAAGCTCAAAGTTCATCTCAGTCCAAATGCAATAATGTCATTGTCCAGCAAACCCCTGACCAGGCGCAGCCGCAGCAGCAATGCAGTAGGGTCAGCACTGTCGTTCCCCCACGGCCACCTACTAGTACTACTGCTGCAGCTAGTCCACTTCCTCATAGAACCCTTGATGACTTCTCTAATAATGTGGCCATCAATAATACCAGCGACTTGGTCGAGGCTGTTAATTCTGTCGACTCACGAATCTCCAGCGAAGATGTTTCACTATCTACAACAACCACTACTAATACTACTAGCGATGGTGATGATCAGTTAGGAAGTTCGCCAACGAATTTTATGATGGATTTCAACACTGACGATCACGAGGACTTCTGCAAAATACTGGACTGTGACTTTGCAAATCTGAACAATGCCATTGATGGAGATGATGAGCATCAAGGTAGTCCGGTTTTAGTACTACCTAAGCAGATGATGGACAAGAATATTCAAGCTGCTGATTTTGGGTCCTTGGCTTCATTTCTGGAGTCTGATGAGGATTGGCTTGGGAATGATCTAAATGTCATGTTGAGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-binding

Protein Analysis

223

Amino Acids

24.4

Weight (kDa)

4.23

Isoelectric Point (pI)

43.69

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-binding PF00249 5 - 29 2.2e-07 Myb-like DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017611)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g36950 FvH4_2g36950
rosa_chinensis RchiOBHm_Chr6g0304811
rosa_laevigata RLG00000010947
rosa_multiflora Rmu_sc0003120.1_g000001
rosa_roxburghii Rroxscaffold_7G00163450
rosa_rugosa Rorug06G0335000
rosa_samantha Rh6AG446700 Rh6BG454900 Rh6CG460200 Rh6DG447100
rosa_wichuraiana Rw6G038870

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 333
AciI CCGC 1 cut(s) 173
AcoI YGGCCR 2 cut(s) 215, 288
AcsI RAATTY 1 cut(s) 430
AfaI GTAC 2 cut(s) 229, 555
AfiI CCNNNNNNNGG 1 cut(s) 163
AgsI TTSAA 2 cut(s) 448, 587
AhlI ACTAGT 1 cut(s) 224
AjnI CCWGG 1 cut(s) 162
AluBI AGCT 3 cut(s) 107, 242, 590
AluI AGCT 3 cut(s) 107, 242, 590
Alw26I GTCTC 1 cut(s) 24
Ama87I CYCGRG 1 cut(s) 41
AoxI GGCC 2 cut(s) 215, 288
ApeKI GCWGC 6 cut(s) 169, 175, 178, 236, 239, 590
ApoI RAATTY 1 cut(s) 430
ArsI GACNNNNNNTTYG 2 cut(s) 476, 508
AspLEI GCGC 2 cut(s) 103, 169
AspS9I GGNCC 1 cut(s) 603
AsuC2I CCSGG 2 cut(s) 42, 43
AsuHPI GGTGA 1 cut(s) 413
AvaI CYCGRG 1 cut(s) 41
AvaII GGWCC 1 cut(s) 603
BalI TGGCCA 1 cut(s) 290
BauI CACGAG 1 cut(s) 461
BbsI GAAGAC 1 cut(s) 40
BbvI GCAGC 6 cut(s) 181, 187, 190, 223, 251, 577
BccI CCATC 6 cut(s) 9, 299, 392, 433, 512, 565
BceAI ACGGC 1 cut(s) 230
BciT130I CCWGG 1 cut(s) 164
BclI TGATCA 1 cut(s) 406
BcnI CCSGG 2 cut(s) 42, 43
BcoDI GTCTC 1 cut(s) 24
BcuI ACTAGT 1 cut(s) 224
BfaI CTAG 3 cut(s) 225, 243, 393
BfmI CTRYAG 1 cut(s) 237
BisI GCNGC 7 cut(s) 170, 173, 176, 179, 237, 240, 591
BlsI GCNGC 7 cut(s) 171, 174, 177, 180, 238, 241, 592
BmcAI AGTACT 2 cut(s) 229, 555
Bme1390I CCNGG 3 cut(s) 42, 43, 164
Bme18I GGWCC 1 cut(s) 603
BmeT110I CYCGRG 1 cut(s) 41
BmgT120I GGNCC 1 cut(s) 603
BmiI GGNNCC 1 cut(s) 604
BmrFI CCNGG 3 cut(s) 42, 43, 164
BmsI GCATC 1 cut(s) 541
BpiI GAAGAC 1 cut(s) 40
BpmI CTGGAG 2 cut(s) 331, 641
Bpu10I CCTNAGC 1 cut(s) 561
BpuMI CCSGG 2 cut(s) 42, 43
BsaBI GATNNNNATC 1 cut(s) 531
BsaI GGTCTC 1 cut(s) 24
BsaJI CCNNGG 3 cut(s) 41, 212, 606
BsaWI WCCGGW 1 cut(s) 544
BsaXI ACNNNNNCTCC 2 cut(s) 62, 92
Bsc4I CCNNNNNNNGG 1 cut(s) 163
Bse1I ACTGG 2 cut(s) 77, 486
Bse3DI GCAATG 1 cut(s) 188
Bse8I GATNNNNATC 1 cut(s) 531
BseBI CCWGG 1 cut(s) 164
BseDI CCNNGG 3 cut(s) 41, 212, 606
BseJI GATNNNNATC 1 cut(s) 531
BseLI CCNNNNNNNGG 1 cut(s) 163
BseMI GCAATG 1 cut(s) 188
BseMII CTCAG 1 cut(s) 134
BseNI ACTGG 2 cut(s) 77, 486
BseXI GCAGC 6 cut(s) 181, 187, 190, 223, 251, 577
BshFI GGCC 2 cut(s) 217, 290
BsiHKCI CYCGRG 1 cut(s) 41
BsiSI CCGG 2 cut(s) 42, 545
BslI CCNNNNNNNGG 1 cut(s) 163
BsmAI GTCTC 1 cut(s) 24
BsnI GGCC 2 cut(s) 217, 290
Bso31I GGTCTC 1 cut(s) 24
BsoBI CYCGRG 1 cut(s) 41
Bsp143I GATC 4 cut(s) 24, 406, 457, 649
BspACI CCGC 1 cut(s) 173
BspANI GGCC 2 cut(s) 217, 290
BspCNI CTCAG 1 cut(s) 133
BspLI GGNNCC 1 cut(s) 604
BspMAI CTGCAG 1 cut(s) 241
BspTNI GGTCTC 1 cut(s) 24
BsrDI GCAATG 1 cut(s) 188
BsrI ACTGG 2 cut(s) 77, 486
BssECI CCNNGG 3 cut(s) 41, 212, 606
BssMI GATC 4 cut(s) 24, 406, 457, 649
BssSI CACGAG 1 cut(s) 461
BssT1I CCWWGG 1 cut(s) 606
Bst2BI CACGAG 1 cut(s) 461
Bst2UI CCWGG 1 cut(s) 164
Bst4CI ACNGT 2 cut(s) 202, 488
BstC8I GCNNGC 1 cut(s) 105
BstDEI CTNAG 3 cut(s) 85, 120, 561
BstDSI CCRYGG 1 cut(s) 212
BstHHI GCGC 2 cut(s) 103, 169
BstKTI GATC 4 cut(s) 27, 409, 460, 652
BstMAI GTCTC 1 cut(s) 24
BstMBI GATC 4 cut(s) 24, 406, 457, 649
BstMWI GCNNNNNNNGC 2 cut(s) 175, 178
BstNI CCWGG 1 cut(s) 164
BstSCI CCNGG 3 cut(s) 40, 41, 162
BstSFI CTRYAG 1 cut(s) 237
BstV1I GCAGC 6 cut(s) 181, 187, 190, 223, 251, 577
BstV2I GAAGAC 1 cut(s) 40
BstXI CCANNNNNNTGG 2 cut(s) 97, 310
BsuRI GGCC 2 cut(s) 217, 290
BtgI CCRYGG 1 cut(s) 212
BtgZI GCGATG 1 cut(s) 411
BtsIMutI CAGTG 2 cut(s) 198, 450
Cac8I GCNNGC 1 cut(s) 105
CfoI GCGC 2 cut(s) 103, 169
Cfr13I GGNCC 1 cut(s) 603
Cfr9I CCCGGG 1 cut(s) 41
Csp6I GTAC 2 cut(s) 228, 554
CviAII CATG 1 cut(s) 661
CviQI GTAC 2 cut(s) 228, 554
DdeI CTNAG 3 cut(s) 85, 120, 561
DpnI GATC 4 cut(s) 26, 408, 459, 651
DpnII GATC 4 cut(s) 24, 406, 457, 649
EaeI YGGCCR 2 cut(s) 215, 288
Eco130I CCWWGG 1 cut(s) 606
Eco31I GGTCTC 1 cut(s) 24
Eco47I GGWCC 1 cut(s) 603
Eco88I CYCGRG 1 cut(s) 41
EcoO109I RGGNCCY 1 cut(s) 603
EcoRII CCWGG 1 cut(s) 162
EcoT14I CCWWGG 1 cut(s) 606
ErhI CCWWGG 1 cut(s) 606
FaeI CATG 1 cut(s) 664
FaiI YATR 3 cut(s) 258, 437, 662
FatI CATG 1 cut(s) 660
FbaI TGATCA 1 cut(s) 406
FblI GTMKAC 1 cut(s) 333
Fnu4HI GCNGC 7 cut(s) 170, 173, 176, 179, 237, 240, 591
Fsp4HI GCNGC 7 cut(s) 170, 173, 176, 179, 237, 240, 591
FspBI CTAG 3 cut(s) 225, 243, 393
GlaI GCGC 2 cut(s) 102, 168
GluI GCNGC 7 cut(s) 170, 173, 176, 179, 237, 240, 591
GsuI CTGGAG 2 cut(s) 331, 641
HaeIII GGCC 2 cut(s) 217, 290
HapII CCGG 2 cut(s) 42, 545
HhaI GCGC 2 cut(s) 103, 169
Hin1II CATG 1 cut(s) 664
Hin6I GCGC 2 cut(s) 101, 167
HinP1I GCGC 2 cut(s) 101, 167
HincII GTYRAC 1 cut(s) 334
HindII GTYRAC 1 cut(s) 334
HinfI GANTC 3 cut(s) 335, 342, 623
HpaII CCGG 2 cut(s) 42, 545
HphI GGTGA 1 cut(s) 413
Hpy166II GTNNAC 2 cut(s) 248, 334
Hpy188I TCNGA 3 cut(s) 24, 504, 628
Hpy188III TCNNGA 4 cut(s) 64, 339, 461, 620
Hpy8I GTNNAC 2 cut(s) 248, 334
HpyCH4III ACNGT 2 cut(s) 202, 488
HpyCH4V TGCA 6 cut(s) 12, 132, 186, 239, 474, 497
HpyF10VI GCNNNNNNNGC 2 cut(s) 175, 178
HpyF3I CTNAG 3 cut(s) 85, 120, 561
Hsp92II CATG 1 cut(s) 664
HspAI GCGC 2 cut(s) 101, 167
Ksp22I TGATCA 1 cut(s) 406
Kzo9I GATC 4 cut(s) 24, 406, 457, 649
Lsp1109I GCAGC 6 cut(s) 181, 187, 190, 223, 251, 577
LweI GCATC 1 cut(s) 541
MaeI CTAG 3 cut(s) 225, 243, 393
MaeIII GTNAC 1 cut(s) 488
MalI GATC 4 cut(s) 26, 408, 459, 651
MboI GATC 4 cut(s) 24, 406, 457, 649
MboII GAAGA 2 cut(s) 45, 365
MlsI TGGCCA 1 cut(s) 290
MluCI AATT 3 cut(s) 67, 325, 430
MluNI TGGCCA 1 cut(s) 290
MlyI GAGTC 2 cut(s) 329, 632
MmeI TCCRAC 1 cut(s) 105
MnlI CCTC 4 cut(s) 264, 310, 457, 625
Mox20I TGGCCA 1 cut(s) 290
MscI TGGCCA 1 cut(s) 290
MseI TTAA 2 cut(s) 324, 670
Msp20I TGGCCA 1 cut(s) 290
MspI CCGG 2 cut(s) 42, 545
MspR9I CCNGG 3 cut(s) 42, 43, 164
MvaI CCWGG 1 cut(s) 164
MwoI GCNNNNNNNGC 2 cut(s) 175, 178
NciI CCSGG 2 cut(s) 42, 43
NdeII GATC 4 cut(s) 24, 406, 457, 649
NlaIII CATG 1 cut(s) 664
NlaIV GGNNCC 1 cut(s) 604
NmuCI GTSAC 1 cut(s) 488
PfeI GAWTC 1 cut(s) 342
PflFI GACNNNGTC 1 cut(s) 311
PkrI GCNGC 7 cut(s) 171, 174, 177, 180, 238, 241, 592
PleI GAGTC 2 cut(s) 329, 631
PpsI GAGTC 2 cut(s) 329, 631
PpuMI RGGWCCY 1 cut(s) 603
Psp5II RGGWCCY 1 cut(s) 603
Psp6I CCWGG 1 cut(s) 162
PspGI CCWGG 1 cut(s) 162
PspN4I GGNNCC 1 cut(s) 604
PspPI GGNCC 1 cut(s) 603
PspPPI RGGWCCY 1 cut(s) 603
PstI CTGCAG 1 cut(s) 241
PsyI GACNNNGTC 1 cut(s) 311
RsaI GTAC 2 cut(s) 229, 555
RsaNI GTAC 2 cut(s) 228, 554
SalI GTCGAC 1 cut(s) 332
SaqAI TTAA 2 cut(s) 324, 670
SatI GCNGC 7 cut(s) 170, 173, 176, 179, 237, 240, 591
Sau3AI GATC 4 cut(s) 24, 406, 457, 649
Sau96I GGNCC 1 cut(s) 603
ScaI AGTACT 2 cut(s) 229, 555
SchI GAGTC 2 cut(s) 329, 632
ScrFI CCNGG 3 cut(s) 42, 43, 164
SetI ASST 6 cut(s) 109, 223, 244, 541, 562, 592
SfaNI GCATC 1 cut(s) 541
SfcI CTRYAG 1 cut(s) 237
SinI GGWCC 1 cut(s) 603
SmaI CCCGGG 1 cut(s) 43
SpeI ACTAGT 1 cut(s) 224
Sse9I AATT 3 cut(s) 67, 325, 430
SsiI CCGC 1 cut(s) 173
SspI AATATT 1 cut(s) 583
SspMI CTAG 3 cut(s) 225, 243, 393
StyD4I CCNGG 3 cut(s) 40, 41, 162
StyI CCWWGG 1 cut(s) 606
TaaI ACNGT 2 cut(s) 202, 488
TaqI TCGA 2 cut(s) 315, 333
TasI AATT 3 cut(s) 67, 325, 430
TatI WGTACW 2 cut(s) 227, 553
TauI GCSGC 1 cut(s) 175
TfiI GAWTC 1 cut(s) 342
Tru1I TTAA 2 cut(s) 324, 670
Tru9I TTAA 2 cut(s) 324, 670
TscAI CASTG 2 cut(s) 205, 457
TseFI GTSAC 1 cut(s) 488
TseI GCWGC 6 cut(s) 169, 175, 178, 236, 239, 590
Tsp45I GTSAC 1 cut(s) 488
TspDTI ATGAA 3 cut(s) 72, 105, 603
TspMI CCCGGG 1 cut(s) 41
TspRI CASTG 2 cut(s) 205, 457
Tth111I GACNNNGTC 1 cut(s) 311
VpaK11BI GGWCC 1 cut(s) 603
XapI RAATTY 1 cut(s) 430
XmaI CCCGGG 1 cut(s) 41
XmiI GTMKAC 1 cut(s) 333
XspI CTAG 3 cut(s) 225, 243, 393
ZrmI AGTACT 2 cut(s) 229, 555
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.