RchiOBHm_Chr6g0304811
MYB Family

SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
OG0017611
Physical Location & Seq
Reverse (-)
63977134 .. 63978851
1718 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ27391

Sequence Viewer

Length: 921 bp
ATGGGTAGAGGTCCTCGGTGTTCGAAGGATGGACTCAACAAAGGGGCTTGGATGGCAGCCGAAGACAAATTGCTCTTGGATTACATCAAGAACCACGGTGAAGGCAAATGGAGCAATGTTGCCAAAGAAACAGGTCTTAAGAGATGTGGGAAGAGCTGCCGGCTTCGGTGGATGAACTATCTGAGACCAGATATTAAGAGAGGCAGCATTTCAGATGATGAAGAAGAACTAATCATCAGACTCCATAAGCTCCTAGGCAACAGATGGTCTCTGATAGCAGGAAGACTTCCCGGGCGAACAGACAATGAAATCAAGAATTACTGGAACTCCAACTTAGCCAAGAAAATGGCACAAGCTCAAAGTTCACCTCAGTCCAAATGCAATAATGTCATTGTCCAGCAAACCCCTGACCAGGCGCAGCCGCAGCAGCAATGCAGTAGGGTCAGCACTGTCGTTCCCCCGCGGCCACCTACTAGTACTATTGCTGCAGCTAGTCCACTTCATCATAGAACCCTTGATGACTTCTGTAATAATGTGGCCATCAATAATACCAACAACTTGGTCAAGGCTGTTAATTCTGTCGACTCACGAATCTCCAGCGAAGATGTTTCACTATCTACAACAGCCACTACTAATACTACTAGCGATGGTGATGATCAGTTAGGAAGTTCGCCAACGAATTTTATGATGGATTTCAACTCTGATGATCACGAGGACTTCTGCAAAATACTGGACTGTGACTTTGCAAATCTGAACAATGCCATTGATGGAGATGATGAGCATCAAGGTAGTCCGGTTTTAGTACTACCAAAGCAGATGATGGACAAGAATATTCAAGCTGCTGATTTTGGGTCCTTGGCTTCATTTCTGGAGTCTGATGAGGATTGGCTTGGGAATGATCTAAATGTCATGTTGAGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-binding

Protein Analysis

306

Amino Acids

33.89

Weight (kDa)

5.3

Isoelectric Point (pI)

42.67

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-binding PF00249 14 - 61 2e-15 Myb-like DNA-binding domain
Myb_DNA-bind_6 PF13921 17 - 76 1.5e-12 Myb-like DNA-binding domain
Myb_DNA-binding PF00249 67 - 112 2.6e-16 Myb-like DNA-binding domain
Myb_DNA-bind_6 PF13921 71 - 120 1.4e-07 Myb-like DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017611)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g36950 FvH4_2g36950
rosa_chinensis RchiOBHm_Chr6g0304811
rosa_laevigata RLG00000010947
rosa_multiflora Rmu_sc0003120.1_g000001
rosa_roxburghii Rroxscaffold_7G00163450
rosa_rugosa Rorug06G0335000
rosa_samantha Rh6AG446700 Rh6BG454900 Rh6CG460200 Rh6DG447100
rosa_wichuraiana Rw6G038870

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 582
AccII CGCG 1 cut(s) 463
AciI CCGC 3 cut(s) 422, 461, 463
AcoI YGGCCR 2 cut(s) 464, 537
AcsI RAATTY 1 cut(s) 679
AfaI GTAC 2 cut(s) 478, 804
AfiI CCNNNNNNNGG 1 cut(s) 412
AflII CTTAAG 1 cut(s) 137
AgsI TTSAA 2 cut(s) 697, 836
AhlI ACTAGT 1 cut(s) 473
AjnI CCWGG 1 cut(s) 411
AluBI AGCT 5 cut(s) 156, 250, 356, 491, 839
AluI AGCT 5 cut(s) 156, 250, 356, 491, 839
Alw26I GTCTC 2 cut(s) 178, 273
Ama87I CYCGRG 1 cut(s) 290
AoxI GGCC 2 cut(s) 464, 537
ApeKI GCWGC 9 cut(s) 56, 156, 204, 418, 424, 427, 485, 488, 839
ApoI RAATTY 1 cut(s) 679
ArsI GACNNNNNNTTYG 2 cut(s) 725, 757
AspA2I CCTAGG 1 cut(s) 253
AspLEI GCGC 1 cut(s) 418
AspS9I GGNCC 2 cut(s) 11, 852
AsuC2I CCSGG 2 cut(s) 291, 292
AsuHPI GGTGA 3 cut(s) 110, 357, 662
AsuII TTCGAA 1 cut(s) 23
AvaI CYCGRG 1 cut(s) 290
AvaII GGWCC 2 cut(s) 11, 852
AvrII CCTAGG 1 cut(s) 253
BalI TGGCCA 1 cut(s) 539
BauI CACGAG 1 cut(s) 710
BbsI GAAGAC 2 cut(s) 69, 289
BbvI GCAGC 9 cut(s) 68, 143, 216, 430, 436, 439, 472, 500, 826
BccI CCATC 8 cut(s) 23, 46, 258, 548, 641, 682, 761, 814
BciT130I CCWGG 1 cut(s) 413
BclI TGATCA 2 cut(s) 655, 706
BcnI CCSGG 2 cut(s) 291, 292
BcoDI GTCTC 2 cut(s) 178, 273
BcuI ACTAGT 1 cut(s) 473
BfaI CTAG 4 cut(s) 254, 474, 492, 642
BfmI CTRYAG 1 cut(s) 486
BfrI CTTAAG 1 cut(s) 137
BlnI CCTAGG 1 cut(s) 253
BmcAI AGTACT 2 cut(s) 478, 804
Bme1390I CCNGG 3 cut(s) 291, 292, 413
Bme18I GGWCC 2 cut(s) 11, 852
BmeT110I CYCGRG 1 cut(s) 290
BmgT120I GGNCC 2 cut(s) 11, 852
BmiI GGNNCC 1 cut(s) 853
BmrFI CCNGG 3 cut(s) 291, 292, 413
BmsI GCATC 1 cut(s) 790
BpiI GAAGAC 2 cut(s) 69, 289
BpmI CTGGAG 2 cut(s) 580, 890
Bpu14I TTCGAA 1 cut(s) 23
BpuMI CCSGG 2 cut(s) 291, 292
BsaBI GATNNNNATC 1 cut(s) 780
BsaI GGTCTC 2 cut(s) 178, 273
BsaJI CCNNGG 6 cut(s) 14, 94, 253, 290, 461, 855
BsaWI WCCGGW 1 cut(s) 793
BsaXI ACNNNNNCTCC 2 cut(s) 311, 341
Bsc4I CCNNNNNNNGG 1 cut(s) 412
Bse118I RCCGGY 1 cut(s) 159
Bse1I ACTGG 2 cut(s) 326, 735
Bse3DI GCAATG 2 cut(s) 121, 437
Bse8I GATNNNNATC 1 cut(s) 780
BseBI CCWGG 1 cut(s) 413
BseDI CCNNGG 6 cut(s) 14, 94, 253, 290, 461, 855
BseGI GGATG 3 cut(s) 34, 57, 177
BseJI GATNNNNATC 1 cut(s) 780
BseLI CCNNNNNNNGG 1 cut(s) 412
BseMI GCAATG 2 cut(s) 121, 437
BseMII CTCAG 2 cut(s) 173, 383
BseNI ACTGG 2 cut(s) 326, 735
BseXI GCAGC 9 cut(s) 68, 143, 216, 430, 436, 439, 472, 500, 826
Bsh1236I CGCG 1 cut(s) 463
BshFI GGCC 2 cut(s) 466, 539
BsiHKCI CYCGRG 1 cut(s) 290
BsiSI CCGG 3 cut(s) 160, 291, 794
BslI CCNNNNNNNGG 1 cut(s) 412
BsmAI GTCTC 2 cut(s) 178, 273
BsnI GGCC 2 cut(s) 466, 539
Bso31I GGTCTC 2 cut(s) 178, 273
BsoBI CYCGRG 1 cut(s) 290
Bsp119I TTCGAA 1 cut(s) 23
Bsp143I GATC 3 cut(s) 655, 706, 898
BspACI CCGC 3 cut(s) 422, 461, 463
BspANI GGCC 2 cut(s) 466, 539
BspCNI CTCAG 2 cut(s) 174, 382
BspFNI CGCG 1 cut(s) 463
BspLI GGNNCC 1 cut(s) 853
BspMAI CTGCAG 1 cut(s) 490
BspQI GCTCTTC 1 cut(s) 146
BspT104I TTCGAA 1 cut(s) 23
BspTI CTTAAG 1 cut(s) 137
BspTNI GGTCTC 2 cut(s) 178, 273
BsrDI GCAATG 2 cut(s) 121, 437
BsrFI RCCGGY 1 cut(s) 159
BsrI ACTGG 2 cut(s) 326, 735
BssAI RCCGGY 1 cut(s) 159
BssECI CCNNGG 6 cut(s) 14, 94, 253, 290, 461, 855
BssMI GATC 3 cut(s) 655, 706, 898
BssSI CACGAG 1 cut(s) 710
BssT1I CCWWGG 2 cut(s) 253, 855
Bst2BI CACGAG 1 cut(s) 710
Bst2UI CCWGG 1 cut(s) 413
Bst4CI ACNGT 3 cut(s) 98, 451, 737
Bst6I CTCTTC 1 cut(s) 146
BstAFI CTTAAG 1 cut(s) 137
BstBI TTCGAA 1 cut(s) 23
BstC8I GCNNGC 1 cut(s) 161
BstDEI CTNAG 3 cut(s) 182, 334, 369
BstDSI CCRYGG 2 cut(s) 94, 461
BstF5I GGATG 3 cut(s) 34, 57, 177
BstFNI CGCG 1 cut(s) 463
BstHHI GCGC 1 cut(s) 418
BstKTI GATC 3 cut(s) 658, 709, 901
BstMAI GTCTC 2 cut(s) 178, 273
BstMBI GATC 3 cut(s) 655, 706, 898
BstMWI GCNNNNNNNGC 4 cut(s) 53, 111, 424, 427
BstNI CCWGG 1 cut(s) 413
BstSCI CCNGG 3 cut(s) 289, 290, 411
BstSFI CTRYAG 1 cut(s) 486
BstUI CGCG 1 cut(s) 463
BstV1I GCAGC 9 cut(s) 68, 143, 216, 430, 436, 439, 472, 500, 826
BstV2I GAAGAC 2 cut(s) 69, 289
BstXI CCANNNNNNTGG 2 cut(s) 346, 559
BsuRI GGCC 2 cut(s) 466, 539
BtgI CCRYGG 2 cut(s) 94, 461
BtgZI GCGATG 1 cut(s) 660
BtsCI GGATG 3 cut(s) 34, 57, 177
BtsIMutI CAGTG 1 cut(s) 447
Cac8I GCNNGC 1 cut(s) 161
CfoI GCGC 1 cut(s) 418
Cfr10I RCCGGY 1 cut(s) 159
Cfr13I GGNCC 2 cut(s) 11, 852
Cfr42I CCGCGG 1 cut(s) 464
Cfr9I CCCGGG 1 cut(s) 290
Csp6I GTAC 2 cut(s) 477, 803
CviAII CATG 1 cut(s) 910
CviQI GTAC 2 cut(s) 477, 803
DdeI CTNAG 3 cut(s) 182, 334, 369
DpnI GATC 3 cut(s) 657, 708, 900
DpnII GATC 3 cut(s) 655, 706, 898
EaeI YGGCCR 2 cut(s) 464, 537
Eam1104I CTCTTC 1 cut(s) 146
EarI CTCTTC 1 cut(s) 146
Eco130I CCWWGG 2 cut(s) 253, 855
Eco31I GGTCTC 2 cut(s) 178, 273
Eco47I GGWCC 2 cut(s) 11, 852
Eco88I CYCGRG 1 cut(s) 290
EcoO109I RGGNCCY 2 cut(s) 11, 852
EcoRII CCWGG 1 cut(s) 411
EcoT14I CCWWGG 2 cut(s) 253, 855
ErhI CCWWGG 2 cut(s) 253, 855
FaeI CATG 1 cut(s) 913
FaiI YATR 4 cut(s) 246, 507, 686, 911
FatI CATG 1 cut(s) 909
FauI CCCGC 1 cut(s) 468
FbaI TGATCA 2 cut(s) 655, 706
FblI GTMKAC 1 cut(s) 582
FokI GGATG 3 cut(s) 41, 64, 184
FspBI CTAG 4 cut(s) 254, 474, 492, 642
GlaI GCGC 1 cut(s) 417
GsuI CTGGAG 2 cut(s) 580, 890
HaeIII GGCC 2 cut(s) 466, 539
HapII CCGG 3 cut(s) 160, 291, 794
HhaI GCGC 1 cut(s) 418
Hin1II CATG 1 cut(s) 913
Hin6I GCGC 1 cut(s) 416
HinP1I GCGC 1 cut(s) 416
HincII GTYRAC 1 cut(s) 583
HindII GTYRAC 1 cut(s) 583
HinfI GANTC 5 cut(s) 33, 240, 584, 591, 872
HpaII CCGG 3 cut(s) 160, 291, 794
HphI GGTGA 3 cut(s) 110, 357, 662
Hpy166II GTNNAC 3 cut(s) 365, 497, 583
Hpy188I TCNGA 7 cut(s) 183, 214, 239, 273, 703, 753, 877
Hpy188III TCNNGA 5 cut(s) 88, 313, 588, 710, 869
Hpy8I GTNNAC 3 cut(s) 365, 497, 583
HpyAV CCTTC 2 cut(s) 19, 95
HpyCH4III ACNGT 3 cut(s) 98, 451, 737
HpyCH4V TGCA 5 cut(s) 381, 435, 488, 723, 746
HpyF10VI GCNNNNNNNGC 4 cut(s) 53, 111, 424, 427
HpyF3I CTNAG 3 cut(s) 182, 334, 369
Hsp92II CATG 1 cut(s) 913
HspAI GCGC 1 cut(s) 416
KroI GCCGGC 1 cut(s) 159
KroNI GCCGGC 1 cut(s) 161
Ksp22I TGATCA 2 cut(s) 655, 706
KspI CCGCGG 1 cut(s) 464
Kzo9I GATC 3 cut(s) 655, 706, 898
LguI GCTCTTC 1 cut(s) 146
LmnI GCTCC 2 cut(s) 111, 255
Lsp1109I GCAGC 9 cut(s) 68, 143, 216, 430, 436, 439, 472, 500, 826
LweI GCATC 1 cut(s) 790
MaeI CTAG 4 cut(s) 254, 474, 492, 642
MaeIII GTNAC 1 cut(s) 737
MalI GATC 3 cut(s) 657, 708, 900
MboI GATC 3 cut(s) 655, 706, 898
MboII GAAGA 6 cut(s) 74, 163, 233, 236, 294, 614
MlsI TGGCCA 1 cut(s) 539
MluCI AATT 4 cut(s) 68, 316, 574, 679
MluNI TGGCCA 1 cut(s) 539
MlyI GAGTC 4 cut(s) 27, 234, 578, 881
MmeI TCCRAC 1 cut(s) 354
MnlI CCTC 5 cut(s) 24, 194, 378, 706, 874
Mox20I TGGCCA 1 cut(s) 539
MroNI GCCGGC 1 cut(s) 159
MscI TGGCCA 1 cut(s) 539
MseI TTAA 4 cut(s) 138, 195, 573, 919
Msp20I TGGCCA 1 cut(s) 539
MspA1I CMGCKG 1 cut(s) 463
MspCI CTTAAG 1 cut(s) 137
MspI CCGG 3 cut(s) 160, 291, 794
MspR9I CCNGG 3 cut(s) 291, 292, 413
MvaI CCWGG 1 cut(s) 413
MvnI CGCG 1 cut(s) 463
MwoI GCNNNNNNNGC 4 cut(s) 53, 111, 424, 427
NaeI GCCGGC 1 cut(s) 161
NciI CCSGG 2 cut(s) 291, 292
NdeII GATC 3 cut(s) 655, 706, 898
NgoMIV GCCGGC 1 cut(s) 159
NlaIII CATG 1 cut(s) 913
NlaIV GGNNCC 1 cut(s) 853
NmuCI GTSAC 1 cut(s) 737
NspV TTCGAA 1 cut(s) 23
PciSI GCTCTTC 1 cut(s) 146
PdiI GCCGGC 1 cut(s) 161
PfeI GAWTC 1 cut(s) 591
PleI GAGTC 4 cut(s) 27, 234, 578, 880
PpsI GAGTC 4 cut(s) 27, 234, 578, 880
PpuMI RGGWCCY 2 cut(s) 11, 852
Psp5II RGGWCCY 2 cut(s) 11, 852
Psp6I CCWGG 1 cut(s) 411
PspGI CCWGG 1 cut(s) 411
PspN4I GGNNCC 1 cut(s) 853
PspPI GGNCC 2 cut(s) 11, 852
PspPPI RGGWCCY 2 cut(s) 11, 852
PstI CTGCAG 1 cut(s) 490
RsaI GTAC 2 cut(s) 478, 804
RsaNI GTAC 2 cut(s) 477, 803
SacII CCGCGG 1 cut(s) 464
SalI GTCGAC 1 cut(s) 581
SapI GCTCTTC 1 cut(s) 146
SaqAI TTAA 4 cut(s) 138, 195, 573, 919
Sau3AI GATC 3 cut(s) 655, 706, 898
Sau96I GGNCC 2 cut(s) 11, 852
ScaI AGTACT 2 cut(s) 478, 804
SchI GAGTC 4 cut(s) 27, 234, 578, 881
ScrFI CCNGG 3 cut(s) 291, 292, 413
SfaNI GCATC 1 cut(s) 790
SfcI CTRYAG 1 cut(s) 486
Sfr303I CCGCGG 1 cut(s) 464
SfuI TTCGAA 1 cut(s) 23
SgrBI CCGCGG 1 cut(s) 464
SinI GGWCC 2 cut(s) 11, 852
SmaI CCCGGG 1 cut(s) 292
SmlI CTYRAG 1 cut(s) 137
SmoI CTYRAG 1 cut(s) 137
SpeI ACTAGT 1 cut(s) 473
Sse9I AATT 4 cut(s) 68, 316, 574, 679
SsiI CCGC 3 cut(s) 422, 461, 463
SspI AATATT 1 cut(s) 832
SspMI CTAG 4 cut(s) 254, 474, 492, 642
StyD4I CCNGG 3 cut(s) 289, 290, 411
StyI CCWWGG 2 cut(s) 253, 855
TaaI ACNGT 3 cut(s) 98, 451, 737
TaqI TCGA 2 cut(s) 23, 582
TasI AATT 4 cut(s) 68, 316, 574, 679
TatI WGTACW 2 cut(s) 476, 802
TauI GCSGC 2 cut(s) 424, 466
TfiI GAWTC 1 cut(s) 591
Tru1I TTAA 4 cut(s) 138, 195, 573, 919
Tru9I TTAA 4 cut(s) 138, 195, 573, 919
TscAI CASTG 1 cut(s) 454
TseFI GTSAC 1 cut(s) 737
TseI GCWGC 9 cut(s) 56, 156, 204, 418, 424, 427, 485, 488, 839
Tsp45I GTSAC 1 cut(s) 737
TspDTI ATGAA 5 cut(s) 188, 234, 321, 491, 852
TspMI CCCGGG 1 cut(s) 290
TspRI CASTG 1 cut(s) 454
Vha464I CTTAAG 1 cut(s) 137
VpaK11BI GGWCC 2 cut(s) 11, 852
XapI RAATTY 1 cut(s) 679
XmaI CCCGGG 1 cut(s) 290
XmaJI CCTAGG 1 cut(s) 253
XmiI GTMKAC 1 cut(s) 582
XspI CTAG 4 cut(s) 254, 474, 492, 642
ZrmI AGTACT 2 cut(s) 478, 804
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.