RLG00000010947
MYB Family

SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr3
OG0017611
Physical Location & Seq
Forward (+)
5601622 .. 5603155
1534 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000010947

Sequence Viewer

Length: 912 bp
ATGGGTAGAGGTCCTCGGTGTTCTAAGGATGGACTCAACAAAGGGGCTTGGATGGCAGCCGAAGACAAATTGCTCTTGGATTACATCAAGAACCACGGTGAAGGCAAATGGAGCAATGTTGCCAAAGAAACAGGTCTTAAGAGATGTGGGAAGAGCTGCCGGCTTCGGTGGATGAACTATCTGAGACCAGATATTAAGAGAGGCAGCATTTCAGATGATGAAGAAGAACTAATCATCAGACTCCATAAGCTCCTAGGCAACAGATGGTCTCTGATAGCAGGAAGGCTTCCCGGGCGAACAGACAATGAAATCAAGAATTACTGGAACTCCAACTTGGCCAAGAAAATGGCACAAGCTCAAAGTTCATCTCAGTCCAAATGCAATAATGTCATTGTCCAGCAAACCCCTGACCAGGCGCAGCCGCAACAGCAATGCAGTAGGGTCAGCACTGTCGTTCCCCCACGGCCACCTACTAGTACTACTGCTGCAGCTAGTCCACTTCATCATAGAACCCTTGATGACTTCTCTAATAATGTGGCCATCAATAATACCAACGACTTGGTTAAGGCTGTTAATTCTGTCGACTCACGAATCTCCAGCGAAGATGTTTCACTATGTACAACAACCACTACTAGCGATGGTGATGATCAGTTAGGAAGTTCGCCAACGAATTTTATGATGGATTTCAACACTGATGATCACGAGGACTTCTGCAAAATACTGGACTGTGACTTCGCAAATCTGAACAATGCCATTGATGGAGATGATGAGCATCAAGGTAGTCCGGTCTTAGTACTACCTAAGCAGATGATGGACAAGAATATTCAAGCTGCTGATTTTGGGTCCTTGGCTTCATTTCTGGAGTCTGATGAGGATTGGCTTGGGAATGATCTAAATGTCATGTTGAGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-binding

Protein Analysis

304

Amino Acids

33.59

Weight (kDa)

5.19

Isoelectric Point (pI)

43.75

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-binding PF00249 14 - 61 2e-15 Myb-like DNA-binding domain
Myb_DNA-bind_6 PF13921 17 - 76 1.5e-12 Myb-like DNA-binding domain
Myb_DNA-binding PF00249 67 - 112 2.6e-16 Myb-like DNA-binding domain
Myb_DNA-bind_6 PF13921 71 - 119 1.7e-07 Myb-like DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0017611)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g36950 FvH4_2g36950
rosa_chinensis RchiOBHm_Chr6g0304811
rosa_laevigata RLG00000010947
rosa_multiflora Rmu_sc0003120.1_g000001
rosa_roxburghii Rroxscaffold_7G00163450
rosa_rugosa Rorug06G0335000
rosa_samantha Rh6AG446700 Rh6BG454900 Rh6CG460200 Rh6DG447100
rosa_wichuraiana Rw6G038870

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 582
AciI CCGC 1 cut(s) 422
AcoI YGGCCR 3 cut(s) 336, 464, 537
AcsI RAATTY 1 cut(s) 670
AfaI GTAC 3 cut(s) 478, 619, 795
AfiI CCNNNNNNNGG 1 cut(s) 412
AflII CTTAAG 1 cut(s) 137
AgsI TTSAA 2 cut(s) 688, 827
AhlI ACTAGT 1 cut(s) 473
AjnI CCWGG 1 cut(s) 411
AjuI GAANNNNNNNTTGG 2 cut(s) 317, 349
AluBI AGCT 5 cut(s) 156, 250, 356, 491, 830
AluI AGCT 5 cut(s) 156, 250, 356, 491, 830
Alw26I GTCTC 2 cut(s) 178, 273
Ama87I CYCGRG 1 cut(s) 290
AoxI GGCC 3 cut(s) 336, 464, 537
ApeKI GCWGC 7 cut(s) 56, 156, 204, 418, 485, 488, 830
ApoI RAATTY 1 cut(s) 670
ArsI GACNNNNNNTTYG 2 cut(s) 716, 748
AspA2I CCTAGG 1 cut(s) 253
AspLEI GCGC 1 cut(s) 418
AspS9I GGNCC 2 cut(s) 11, 843
AsuC2I CCSGG 2 cut(s) 291, 292
AsuHPI GGTGA 2 cut(s) 110, 653
AvaI CYCGRG 1 cut(s) 290
AvaII GGWCC 2 cut(s) 11, 843
AvrII CCTAGG 1 cut(s) 253
BalI TGGCCA 2 cut(s) 338, 539
BauI CACGAG 1 cut(s) 701
BbsI GAAGAC 1 cut(s) 69
BbvI GCAGC 7 cut(s) 68, 143, 216, 430, 472, 500, 817
BccI CCATC 8 cut(s) 23, 46, 258, 548, 632, 673, 752, 805
BceAI ACGGC 1 cut(s) 479
BciT130I CCWGG 1 cut(s) 413
BclI TGATCA 2 cut(s) 646, 697
BcnI CCSGG 2 cut(s) 291, 292
BcoDI GTCTC 2 cut(s) 178, 273
BcuI ACTAGT 1 cut(s) 473
BfaI CTAG 4 cut(s) 254, 474, 492, 633
BfmI CTRYAG 1 cut(s) 486
BfrI CTTAAG 1 cut(s) 137
BisI GCNGC 8 cut(s) 57, 157, 205, 419, 422, 486, 489, 831
BlnI CCTAGG 1 cut(s) 253
BlsI GCNGC 8 cut(s) 58, 158, 206, 420, 423, 487, 490, 832
BmcAI AGTACT 2 cut(s) 478, 795
Bme1390I CCNGG 3 cut(s) 291, 292, 413
Bme18I GGWCC 2 cut(s) 11, 843
BmeT110I CYCGRG 1 cut(s) 290
BmgT120I GGNCC 2 cut(s) 11, 843
BmiI GGNNCC 1 cut(s) 844
BmrFI CCNGG 3 cut(s) 291, 292, 413
BmsI GCATC 1 cut(s) 781
BpiI GAAGAC 1 cut(s) 69
BpmI CTGGAG 2 cut(s) 580, 881
Bpu10I CCTNAGC 1 cut(s) 801
BpuMI CCSGG 2 cut(s) 291, 292
BsaBI GATNNNNATC 1 cut(s) 771
BsaI GGTCTC 2 cut(s) 178, 273
BsaJI CCNNGG 6 cut(s) 14, 94, 253, 290, 461, 846
BsaWI WCCGGW 1 cut(s) 784
BsaXI ACNNNNNCTCC 2 cut(s) 311, 341
Bsc4I CCNNNNNNNGG 1 cut(s) 412
Bse118I RCCGGY 1 cut(s) 159
Bse1I ACTGG 2 cut(s) 326, 726
Bse3DI GCAATG 2 cut(s) 121, 437
Bse8I GATNNNNATC 1 cut(s) 771
BseBI CCWGG 1 cut(s) 413
BseDI CCNNGG 6 cut(s) 14, 94, 253, 290, 461, 846
BseGI GGATG 3 cut(s) 34, 57, 177
BseJI GATNNNNATC 1 cut(s) 771
BseLI CCNNNNNNNGG 1 cut(s) 412
BseMI GCAATG 2 cut(s) 121, 437
BseMII CTCAG 2 cut(s) 173, 383
BseNI ACTGG 2 cut(s) 326, 726
BseXI GCAGC 7 cut(s) 68, 143, 216, 430, 472, 500, 817
BshFI GGCC 3 cut(s) 338, 466, 539
BsiHKCI CYCGRG 1 cut(s) 290
BsiSI CCGG 3 cut(s) 160, 291, 785
BslI CCNNNNNNNGG 1 cut(s) 412
BsmAI GTCTC 2 cut(s) 178, 273
BsnI GGCC 3 cut(s) 338, 466, 539
Bso31I GGTCTC 2 cut(s) 178, 273
BsoBI CYCGRG 1 cut(s) 290
Bsp1407I TGTACA 1 cut(s) 617
Bsp143I GATC 3 cut(s) 646, 697, 889
BspACI CCGC 1 cut(s) 422
BspANI GGCC 3 cut(s) 338, 466, 539
BspCNI CTCAG 2 cut(s) 174, 382
BspLI GGNNCC 1 cut(s) 844
BspMAI CTGCAG 1 cut(s) 490
BspQI GCTCTTC 1 cut(s) 146
BspTI CTTAAG 1 cut(s) 137
BspTNI GGTCTC 2 cut(s) 178, 273
BsrDI GCAATG 2 cut(s) 121, 437
BsrFI RCCGGY 1 cut(s) 159
BsrGI TGTACA 1 cut(s) 617
BsrI ACTGG 2 cut(s) 326, 726
BssAI RCCGGY 1 cut(s) 159
BssECI CCNNGG 6 cut(s) 14, 94, 253, 290, 461, 846
BssMI GATC 3 cut(s) 646, 697, 889
BssSI CACGAG 1 cut(s) 701
BssT1I CCWWGG 2 cut(s) 253, 846
Bst2BI CACGAG 1 cut(s) 701
Bst2UI CCWGG 1 cut(s) 413
Bst4CI ACNGT 3 cut(s) 98, 451, 728
Bst6I CTCTTC 1 cut(s) 146
BstAFI CTTAAG 1 cut(s) 137
BstAUI TGTACA 1 cut(s) 617
BstC8I GCNNGC 1 cut(s) 161
BstDEI CTNAG 5 cut(s) 24, 182, 369, 790, 801
BstDSI CCRYGG 2 cut(s) 94, 461
BstF5I GGATG 3 cut(s) 34, 57, 177
BstHHI GCGC 1 cut(s) 418
BstKTI GATC 3 cut(s) 649, 700, 892
BstMAI GTCTC 2 cut(s) 178, 273
BstMBI GATC 3 cut(s) 646, 697, 889
BstMWI GCNNNNNNNGC 4 cut(s) 53, 111, 292, 427
BstNI CCWGG 1 cut(s) 413
BstSCI CCNGG 3 cut(s) 289, 290, 411
BstSFI CTRYAG 1 cut(s) 486
BstV1I GCAGC 7 cut(s) 68, 143, 216, 430, 472, 500, 817
BstV2I GAAGAC 1 cut(s) 69
BstXI CCANNNNNNTGG 2 cut(s) 346, 559
BsuRI GGCC 3 cut(s) 338, 466, 539
BtgI CCRYGG 2 cut(s) 94, 461
BtgZI GCGATG 1 cut(s) 651
BtsCI GGATG 3 cut(s) 34, 57, 177
BtsIMutI CAGTG 2 cut(s) 447, 690
Cac8I GCNNGC 1 cut(s) 161
CfoI GCGC 1 cut(s) 418
Cfr10I RCCGGY 1 cut(s) 159
Cfr13I GGNCC 2 cut(s) 11, 843
Cfr9I CCCGGG 1 cut(s) 290
Csp6I GTAC 3 cut(s) 477, 618, 794
CviAII CATG 1 cut(s) 901
CviQI GTAC 3 cut(s) 477, 618, 794
DdeI CTNAG 5 cut(s) 24, 182, 369, 790, 801
DpnI GATC 3 cut(s) 648, 699, 891
DpnII GATC 3 cut(s) 646, 697, 889
EaeI YGGCCR 3 cut(s) 336, 464, 537
Eam1104I CTCTTC 1 cut(s) 146
EarI CTCTTC 1 cut(s) 146
Eco130I CCWWGG 2 cut(s) 253, 846
Eco31I GGTCTC 2 cut(s) 178, 273
Eco47I GGWCC 2 cut(s) 11, 843
Eco88I CYCGRG 1 cut(s) 290
EcoO109I RGGNCCY 2 cut(s) 11, 843
EcoRII CCWGG 1 cut(s) 411
EcoT14I CCWWGG 2 cut(s) 253, 846
ErhI CCWWGG 2 cut(s) 253, 846
FaeI CATG 1 cut(s) 904
FaiI YATR 5 cut(s) 246, 507, 616, 677, 902
FatI CATG 1 cut(s) 900
FbaI TGATCA 2 cut(s) 646, 697
FblI GTMKAC 1 cut(s) 582
Fnu4HI GCNGC 8 cut(s) 57, 157, 205, 419, 422, 486, 489, 831
FokI GGATG 3 cut(s) 41, 64, 184
Fsp4HI GCNGC 8 cut(s) 57, 157, 205, 419, 422, 486, 489, 831
FspBI CTAG 4 cut(s) 254, 474, 492, 633
GlaI GCGC 1 cut(s) 417
GluI GCNGC 8 cut(s) 57, 157, 205, 419, 422, 486, 489, 831
GsuI CTGGAG 2 cut(s) 580, 881
HaeIII GGCC 3 cut(s) 338, 466, 539
HapII CCGG 3 cut(s) 160, 291, 785
HhaI GCGC 1 cut(s) 418
Hin1II CATG 1 cut(s) 904
Hin6I GCGC 1 cut(s) 416
HinP1I GCGC 1 cut(s) 416
HincII GTYRAC 1 cut(s) 583
HindII GTYRAC 1 cut(s) 583
HinfI GANTC 5 cut(s) 33, 240, 584, 591, 863
HpaII CCGG 3 cut(s) 160, 291, 785
HphI GGTGA 2 cut(s) 110, 653
Hpy166II GTNNAC 2 cut(s) 497, 583
Hpy188I TCNGA 6 cut(s) 183, 214, 239, 273, 744, 868
Hpy188III TCNNGA 5 cut(s) 88, 313, 588, 701, 860
Hpy8I GTNNAC 2 cut(s) 497, 583
HpyAV CCTTC 2 cut(s) 95, 276
HpyCH4III ACNGT 3 cut(s) 98, 451, 728
HpyCH4V TGCA 4 cut(s) 381, 435, 488, 714
HpyF10VI GCNNNNNNNGC 4 cut(s) 53, 111, 292, 427
HpyF3I CTNAG 5 cut(s) 24, 182, 369, 790, 801
Hsp92II CATG 1 cut(s) 904
HspAI GCGC 1 cut(s) 416
KroI GCCGGC 1 cut(s) 159
KroNI GCCGGC 1 cut(s) 161
Ksp22I TGATCA 2 cut(s) 646, 697
Kzo9I GATC 3 cut(s) 646, 697, 889
LguI GCTCTTC 1 cut(s) 146
LmnI GCTCC 2 cut(s) 111, 255
Lsp1109I GCAGC 7 cut(s) 68, 143, 216, 430, 472, 500, 817
LweI GCATC 1 cut(s) 781
MaeI CTAG 4 cut(s) 254, 474, 492, 633
MaeIII GTNAC 1 cut(s) 728
MalI GATC 3 cut(s) 648, 699, 891
MboI GATC 3 cut(s) 646, 697, 889
MboII GAAGA 5 cut(s) 74, 163, 233, 236, 614
MlsI TGGCCA 2 cut(s) 338, 539
MluCI AATT 4 cut(s) 68, 316, 574, 670
MluNI TGGCCA 2 cut(s) 338, 539
MlyI GAGTC 4 cut(s) 27, 234, 578, 872
MmeI TCCRAC 1 cut(s) 354
MnlI CCTC 4 cut(s) 24, 194, 697, 865
Mox20I TGGCCA 2 cut(s) 338, 539
MroNI GCCGGC 1 cut(s) 159
MscI TGGCCA 2 cut(s) 338, 539
MseI TTAA 5 cut(s) 138, 195, 564, 573, 910
Msp20I TGGCCA 2 cut(s) 338, 539
MspCI CTTAAG 1 cut(s) 137
MspI CCGG 3 cut(s) 160, 291, 785
MspR9I CCNGG 3 cut(s) 291, 292, 413
MvaI CCWGG 1 cut(s) 413
MwoI GCNNNNNNNGC 4 cut(s) 53, 111, 292, 427
NaeI GCCGGC 1 cut(s) 161
NciI CCSGG 2 cut(s) 291, 292
NdeII GATC 3 cut(s) 646, 697, 889
NgoMIV GCCGGC 1 cut(s) 159
NlaIII CATG 1 cut(s) 904
NlaIV GGNNCC 1 cut(s) 844
NmuCI GTSAC 1 cut(s) 728
PciSI GCTCTTC 1 cut(s) 146
PdiI GCCGGC 1 cut(s) 161
PfeI GAWTC 1 cut(s) 591
PkrI GCNGC 8 cut(s) 58, 158, 206, 420, 423, 487, 490, 832
PleI GAGTC 4 cut(s) 27, 234, 578, 871
PpsI GAGTC 4 cut(s) 27, 234, 578, 871
PpuMI RGGWCCY 2 cut(s) 11, 843
Psp5II RGGWCCY 2 cut(s) 11, 843
Psp6I CCWGG 1 cut(s) 411
PspGI CCWGG 1 cut(s) 411
PspN4I GGNNCC 1 cut(s) 844
PspPI GGNCC 2 cut(s) 11, 843
PspPPI RGGWCCY 2 cut(s) 11, 843
PstI CTGCAG 1 cut(s) 490
RsaI GTAC 3 cut(s) 478, 619, 795
RsaNI GTAC 3 cut(s) 477, 618, 794
SalI GTCGAC 1 cut(s) 581
SapI GCTCTTC 1 cut(s) 146
SaqAI TTAA 5 cut(s) 138, 195, 564, 573, 910
SatI GCNGC 8 cut(s) 57, 157, 205, 419, 422, 486, 489, 831
Sau3AI GATC 3 cut(s) 646, 697, 889
Sau96I GGNCC 2 cut(s) 11, 843
ScaI AGTACT 2 cut(s) 478, 795
SchI GAGTC 4 cut(s) 27, 234, 578, 872
ScrFI CCNGG 3 cut(s) 291, 292, 413
SfaNI GCATC 1 cut(s) 781
SfcI CTRYAG 1 cut(s) 486
SinI GGWCC 2 cut(s) 11, 843
SmaI CCCGGG 1 cut(s) 292
SmlI CTYRAG 1 cut(s) 137
SmoI CTYRAG 1 cut(s) 137
SpeI ACTAGT 1 cut(s) 473
Sse9I AATT 4 cut(s) 68, 316, 574, 670
SsiI CCGC 1 cut(s) 422
SspI AATATT 1 cut(s) 823
SspMI CTAG 4 cut(s) 254, 474, 492, 633
StyD4I CCNGG 3 cut(s) 289, 290, 411
StyI CCWWGG 2 cut(s) 253, 846
TaaI ACNGT 3 cut(s) 98, 451, 728
TaqI TCGA 1 cut(s) 582
TasI AATT 4 cut(s) 68, 316, 574, 670
TatI WGTACW 3 cut(s) 476, 617, 793
TauI GCSGC 1 cut(s) 424
TfiI GAWTC 1 cut(s) 591
Tru1I TTAA 5 cut(s) 138, 195, 564, 573, 910
Tru9I TTAA 5 cut(s) 138, 195, 564, 573, 910
TscAI CASTG 2 cut(s) 454, 697
TseFI GTSAC 1 cut(s) 728
TseI GCWGC 7 cut(s) 56, 156, 204, 418, 485, 488, 830
Tsp45I GTSAC 1 cut(s) 728
TspDTI ATGAA 6 cut(s) 188, 234, 321, 354, 491, 843
TspMI CCCGGG 1 cut(s) 290
TspRI CASTG 2 cut(s) 454, 697
Vha464I CTTAAG 1 cut(s) 137
VpaK11BI GGWCC 2 cut(s) 11, 843
XapI RAATTY 1 cut(s) 670
XmaI CCCGGG 1 cut(s) 290
XmaJI CCTAGG 1 cut(s) 253
XmiI GTMKAC 1 cut(s) 582
XspI CTAG 4 cut(s) 254, 474, 492, 633
ZrmI AGTACT 2 cut(s) 478, 795
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.