Rroxscaffold_7G00163450
MYB Family

SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
OG0017611
Physical Location & Seq
Forward (+)
5701434 .. 5702980
1547 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_7G00163450.1

Sequence Viewer

Length: 774 bp
ATGGGTAGAGGTCCTCGGTGTTCTAAGGATGGACTCAACAAAGGGGCTTGGATGGCAGCCGAAGACAAATTGCTCTTGGATTACATCAAGAACCACGGTGAAGGCAAATGGAGCAATGTTGCCAAAGAAACAGGAAGGCTTCCCGGGCGAACAGACAATGAAATCAAGAATTACTGGAACTCCAACTTAGCCAAGAAAATGGCACAAGCTCAAAGTTCTTCTCAGTCCAAATGCAATAATGTCATTGTCCAGCAAACCCCTGACCAGGCGCAGCCGCAACAGCAATGCAGTAGGGTCAGCACTGTCGTTCCCCCACGGCCACCTACTAGTACTACTGCTGCAGCTAGTCCACTTCATCATAGAACCCTTGATGACTTCTCTAATAATGTGGCCATCAATAATACCAACGACTTGATCAAGGCTGTTAATTCTGTCGACTCACGAATCTCCAGCGAAGATGTTTCACTATCTACAACAACCACTACCAATACTACTAGCGATGGTGATGATCAGTTAGGAAGTTCGCCAACGAATTTTATGATGGATTTCAACACTGATGATCACGAGGACTTCTGCAAAATACTGGACTGTGACTTTGCAAATCTGAACAATGCCATTGATGGAGATGACGAGCATCAAGGTAGTCCGGTTTTAGTACTACCTAAGCAGATGATGGACAAGAATATTCAAGCTGCTGATTTTGGGTCCTTGGCTTCATTTCTGGAGTCTGATGAGGATTGGCTTGGGAATGATCTAAATGTCATGTTGAGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-binding

Protein Analysis

257

Amino Acids

28.11

Weight (kDa)

4.63

Isoelectric Point (pI)

34.78

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-binding PF00249 14 - 63 1.5e-14 Myb-like DNA-binding domain
Myb_DNA-bind_6 PF13921 17 - 70 1.8e-07 Myb-like DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017611)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g36950 FvH4_2g36950
rosa_chinensis RchiOBHm_Chr6g0304811
rosa_laevigata RLG00000010947
rosa_multiflora Rmu_sc0003120.1_g000001
rosa_roxburghii Rroxscaffold_7G00163450
rosa_rugosa Rorug06G0335000
rosa_samantha Rh6AG446700 Rh6BG454900 Rh6CG460200 Rh6DG447100
rosa_wichuraiana Rw6G038870

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 435
AciI CCGC 1 cut(s) 275
AcoI YGGCCR 2 cut(s) 317, 390
AcsI RAATTY 1 cut(s) 532
AfaI GTAC 2 cut(s) 331, 657
AfiI CCNNNNNNNGG 1 cut(s) 265
AgsI TTSAA 2 cut(s) 550, 689
AhlI ACTAGT 1 cut(s) 326
AjnI CCWGG 1 cut(s) 264
AluBI AGCT 3 cut(s) 209, 344, 692
AluI AGCT 3 cut(s) 209, 344, 692
Ama87I CYCGRG 1 cut(s) 143
AoxI GGCC 2 cut(s) 317, 390
ApeKI GCWGC 5 cut(s) 56, 271, 338, 341, 692
ApoI RAATTY 1 cut(s) 532
ArsI GACNNNNNNTTYG 2 cut(s) 578, 610
AspLEI GCGC 1 cut(s) 271
AspS9I GGNCC 2 cut(s) 11, 705
AsuC2I CCSGG 2 cut(s) 144, 145
AsuHPI GGTGA 2 cut(s) 110, 515
AvaI CYCGRG 1 cut(s) 143
AvaII GGWCC 2 cut(s) 11, 705
BalI TGGCCA 1 cut(s) 392
BauI CACGAG 1 cut(s) 563
BbsI GAAGAC 1 cut(s) 69
BbvI GCAGC 5 cut(s) 68, 283, 325, 353, 679
BccI CCATC 7 cut(s) 23, 46, 401, 494, 535, 614, 667
BceAI ACGGC 1 cut(s) 332
BciT130I CCWGG 1 cut(s) 266
BclI TGATCA 3 cut(s) 414, 508, 559
BcnI CCSGG 2 cut(s) 144, 145
BcuI ACTAGT 1 cut(s) 326
BfaI CTAG 3 cut(s) 327, 345, 495
BfmI CTRYAG 1 cut(s) 339
BisI GCNGC 6 cut(s) 57, 272, 275, 339, 342, 693
BlsI GCNGC 6 cut(s) 58, 273, 276, 340, 343, 694
BmcAI AGTACT 2 cut(s) 331, 657
Bme1390I CCNGG 3 cut(s) 144, 145, 266
Bme18I GGWCC 2 cut(s) 11, 705
BmeT110I CYCGRG 1 cut(s) 143
BmgT120I GGNCC 2 cut(s) 11, 705
BmiI GGNNCC 1 cut(s) 706
BmrFI CCNGG 3 cut(s) 144, 145, 266
BmsI GCATC 1 cut(s) 643
BpiI GAAGAC 1 cut(s) 69
BpmI CTGGAG 2 cut(s) 433, 743
Bpu10I CCTNAGC 1 cut(s) 663
BpuMI CCSGG 2 cut(s) 144, 145
BsaJI CCNNGG 5 cut(s) 14, 94, 143, 314, 708
BsaWI WCCGGW 1 cut(s) 646
BsaXI ACNNNNNCTCC 2 cut(s) 164, 194
Bsc4I CCNNNNNNNGG 1 cut(s) 265
Bse1I ACTGG 2 cut(s) 179, 588
Bse3DI GCAATG 2 cut(s) 121, 290
BseBI CCWGG 1 cut(s) 266
BseDI CCNNGG 5 cut(s) 14, 94, 143, 314, 708
BseGI GGATG 2 cut(s) 34, 57
BseLI CCNNNNNNNGG 1 cut(s) 265
BseMI GCAATG 2 cut(s) 121, 290
BseMII CTCAG 1 cut(s) 236
BseNI ACTGG 2 cut(s) 179, 588
BseXI GCAGC 5 cut(s) 68, 283, 325, 353, 679
BshFI GGCC 2 cut(s) 319, 392
BsiHKCI CYCGRG 1 cut(s) 143
BsiSI CCGG 2 cut(s) 144, 647
BslI CCNNNNNNNGG 1 cut(s) 265
BsnI GGCC 2 cut(s) 319, 392
BsoBI CYCGRG 1 cut(s) 143
Bsp143I GATC 4 cut(s) 414, 508, 559, 751
BspACI CCGC 1 cut(s) 275
BspANI GGCC 2 cut(s) 319, 392
BspCNI CTCAG 1 cut(s) 235
BspLI GGNNCC 1 cut(s) 706
BspMAI CTGCAG 1 cut(s) 343
BsrDI GCAATG 2 cut(s) 121, 290
BsrI ACTGG 2 cut(s) 179, 588
BssECI CCNNGG 5 cut(s) 14, 94, 143, 314, 708
BssMI GATC 4 cut(s) 414, 508, 559, 751
BssSI CACGAG 1 cut(s) 563
BssT1I CCWWGG 1 cut(s) 708
Bst2BI CACGAG 1 cut(s) 563
Bst2UI CCWGG 1 cut(s) 266
Bst4CI ACNGT 3 cut(s) 98, 304, 590
BstDEI CTNAG 4 cut(s) 24, 187, 222, 663
BstDSI CCRYGG 2 cut(s) 94, 314
BstF5I GGATG 2 cut(s) 34, 57
BstHHI GCGC 1 cut(s) 271
BstKTI GATC 4 cut(s) 417, 511, 562, 754
BstMBI GATC 4 cut(s) 414, 508, 559, 751
BstMWI GCNNNNNNNGC 4 cut(s) 53, 111, 145, 280
BstNI CCWGG 1 cut(s) 266
BstSCI CCNGG 3 cut(s) 142, 143, 264
BstSFI CTRYAG 1 cut(s) 339
BstV1I GCAGC 5 cut(s) 68, 283, 325, 353, 679
BstV2I GAAGAC 1 cut(s) 69
BstXI CCANNNNNNTGG 1 cut(s) 199
BsuRI GGCC 2 cut(s) 319, 392
BtgI CCRYGG 2 cut(s) 94, 314
BtgZI GCGATG 1 cut(s) 513
BtsCI GGATG 2 cut(s) 34, 57
BtsIMutI CAGTG 2 cut(s) 300, 552
CfoI GCGC 1 cut(s) 271
Cfr13I GGNCC 2 cut(s) 11, 705
Cfr9I CCCGGG 1 cut(s) 143
Csp6I GTAC 2 cut(s) 330, 656
CviAII CATG 1 cut(s) 763
CviQI GTAC 2 cut(s) 330, 656
DdeI CTNAG 4 cut(s) 24, 187, 222, 663
DpnI GATC 4 cut(s) 416, 510, 561, 753
DpnII GATC 4 cut(s) 414, 508, 559, 751
EaeI YGGCCR 2 cut(s) 317, 390
Eco130I CCWWGG 1 cut(s) 708
Eco47I GGWCC 2 cut(s) 11, 705
Eco88I CYCGRG 1 cut(s) 143
EcoO109I RGGNCCY 2 cut(s) 11, 705
EcoRII CCWGG 1 cut(s) 264
EcoT14I CCWWGG 1 cut(s) 708
ErhI CCWWGG 1 cut(s) 708
FaeI CATG 1 cut(s) 766
FaiI YATR 3 cut(s) 360, 539, 764
FatI CATG 1 cut(s) 762
FbaI TGATCA 3 cut(s) 414, 508, 559
FblI GTMKAC 1 cut(s) 435
Fnu4HI GCNGC 6 cut(s) 57, 272, 275, 339, 342, 693
FokI GGATG 2 cut(s) 41, 64
Fsp4HI GCNGC 6 cut(s) 57, 272, 275, 339, 342, 693
FspBI CTAG 3 cut(s) 327, 345, 495
GlaI GCGC 1 cut(s) 270
GluI GCNGC 6 cut(s) 57, 272, 275, 339, 342, 693
GsuI CTGGAG 2 cut(s) 433, 743
HaeIII GGCC 2 cut(s) 319, 392
HapII CCGG 2 cut(s) 144, 647
HhaI GCGC 1 cut(s) 271
Hin1II CATG 1 cut(s) 766
Hin6I GCGC 1 cut(s) 269
HinP1I GCGC 1 cut(s) 269
HincII GTYRAC 1 cut(s) 436
HindII GTYRAC 1 cut(s) 436
HinfI GANTC 4 cut(s) 33, 437, 444, 725
HpaII CCGG 2 cut(s) 144, 647
HphI GGTGA 2 cut(s) 110, 515
Hpy166II GTNNAC 2 cut(s) 350, 436
Hpy188I TCNGA 2 cut(s) 606, 730
Hpy188III TCNNGA 5 cut(s) 88, 166, 441, 563, 722
Hpy8I GTNNAC 2 cut(s) 350, 436
HpyAV CCTTC 2 cut(s) 95, 129
HpyCH4III ACNGT 3 cut(s) 98, 304, 590
HpyCH4V TGCA 5 cut(s) 234, 288, 341, 576, 599
HpyF10VI GCNNNNNNNGC 4 cut(s) 53, 111, 145, 280
HpyF3I CTNAG 4 cut(s) 24, 187, 222, 663
Hsp92II CATG 1 cut(s) 766
HspAI GCGC 1 cut(s) 269
Ksp22I TGATCA 3 cut(s) 414, 508, 559
Kzo9I GATC 4 cut(s) 414, 508, 559, 751
LmnI GCTCC 1 cut(s) 111
Lsp1109I GCAGC 5 cut(s) 68, 283, 325, 353, 679
LweI GCATC 1 cut(s) 643
MaeI CTAG 3 cut(s) 327, 345, 495
MaeIII GTNAC 1 cut(s) 590
MalI GATC 4 cut(s) 416, 510, 561, 753
MboI GATC 4 cut(s) 414, 508, 559, 751
MboII GAAGA 3 cut(s) 74, 210, 467
MlsI TGGCCA 1 cut(s) 392
MluCI AATT 4 cut(s) 68, 169, 427, 532
MluNI TGGCCA 1 cut(s) 392
MlyI GAGTC 3 cut(s) 27, 431, 734
MmeI TCCRAC 1 cut(s) 207
MnlI CCTC 3 cut(s) 24, 559, 727
Mox20I TGGCCA 1 cut(s) 392
MscI TGGCCA 1 cut(s) 392
MseI TTAA 2 cut(s) 426, 772
Msp20I TGGCCA 1 cut(s) 392
MspI CCGG 2 cut(s) 144, 647
MspR9I CCNGG 3 cut(s) 144, 145, 266
MvaI CCWGG 1 cut(s) 266
MwoI GCNNNNNNNGC 4 cut(s) 53, 111, 145, 280
NciI CCSGG 2 cut(s) 144, 145
NdeII GATC 4 cut(s) 414, 508, 559, 751
NlaIII CATG 1 cut(s) 766
NlaIV GGNNCC 1 cut(s) 706
NmuCI GTSAC 1 cut(s) 590
PfeI GAWTC 1 cut(s) 444
PkrI GCNGC 6 cut(s) 58, 273, 276, 340, 343, 694
PleI GAGTC 3 cut(s) 27, 431, 733
PpsI GAGTC 3 cut(s) 27, 431, 733
PpuMI RGGWCCY 2 cut(s) 11, 705
Psp5II RGGWCCY 2 cut(s) 11, 705
Psp6I CCWGG 1 cut(s) 264
PspGI CCWGG 1 cut(s) 264
PspN4I GGNNCC 1 cut(s) 706
PspPI GGNCC 2 cut(s) 11, 705
PspPPI RGGWCCY 2 cut(s) 11, 705
PstI CTGCAG 1 cut(s) 343
RsaI GTAC 2 cut(s) 331, 657
RsaNI GTAC 2 cut(s) 330, 656
SalI GTCGAC 1 cut(s) 434
SaqAI TTAA 2 cut(s) 426, 772
SatI GCNGC 6 cut(s) 57, 272, 275, 339, 342, 693
Sau3AI GATC 4 cut(s) 414, 508, 559, 751
Sau96I GGNCC 2 cut(s) 11, 705
ScaI AGTACT 2 cut(s) 331, 657
SchI GAGTC 3 cut(s) 27, 431, 734
ScrFI CCNGG 3 cut(s) 144, 145, 266
SetI ASST 7 cut(s) 13, 211, 325, 346, 643, 664, 694
SfaNI GCATC 1 cut(s) 643
SfcI CTRYAG 1 cut(s) 339
SinI GGWCC 2 cut(s) 11, 705
SmaI CCCGGG 1 cut(s) 145
SpeI ACTAGT 1 cut(s) 326
Sse9I AATT 4 cut(s) 68, 169, 427, 532
SsiI CCGC 1 cut(s) 275
SspI AATATT 1 cut(s) 685
SspMI CTAG 3 cut(s) 327, 345, 495
StyD4I CCNGG 3 cut(s) 142, 143, 264
StyI CCWWGG 1 cut(s) 708
TaaI ACNGT 3 cut(s) 98, 304, 590
TaqI TCGA 1 cut(s) 435
TasI AATT 4 cut(s) 68, 169, 427, 532
TatI WGTACW 2 cut(s) 329, 655
TauI GCSGC 1 cut(s) 277
TfiI GAWTC 1 cut(s) 444
Tru1I TTAA 2 cut(s) 426, 772
Tru9I TTAA 2 cut(s) 426, 772
TscAI CASTG 2 cut(s) 307, 559
TseFI GTSAC 1 cut(s) 590
TseI GCWGC 5 cut(s) 56, 271, 338, 341, 692
Tsp45I GTSAC 1 cut(s) 590
TspDTI ATGAA 3 cut(s) 174, 344, 705
TspMI CCCGGG 1 cut(s) 143
TspRI CASTG 2 cut(s) 307, 559
VpaK11BI GGWCC 2 cut(s) 11, 705
XapI RAATTY 1 cut(s) 532
XmaI CCCGGG 1 cut(s) 143
XmiI GTMKAC 1 cut(s) 435
XspI CTAG 3 cut(s) 327, 345, 495
ZrmI AGTACT 2 cut(s) 331, 657
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.