Rh6DG447100
MYB Family

SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6D
OG0017611
Physical Location & Seq
Reverse (-)
62042559 .. 62044770
2212 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6DG447100.1

Sequence Viewer

Length: 804 bp
ATGGTGATATATGCAGGTCTTAAGAGATGTGGGAAGAGCTGCCGGCTTCGGTGGATGAACTATCTGAGACCAGATATTAAGAGAGGCAGCATTTCAGATGATGAAGAAGAACTAATCATCAGACTCCATAAGCTCCTAGGCAACAGATGGTCTCTGATCGCAGGAAGACTTCCCGGGCGAACAGACAATGAAATCAAGAATTACTGGAACTCCAACTTAGCCAAGAAAATGGCACAAGCTCAAAGTTCATCTCAGTCCAAATGCAATAATGTCATTGTCCAGCAAACCCCTGACCAGGCGCAGCCGCAGCAGCAATGCAGTAGGGTCAGCACTGTCGTTCCCCCACGGCCACCTACTAGTACTACTGCTGCAGCTAGTCCACTTCCTCATAGAACCCTTGATGACTTCTCTAATAATGTGGCCATCAATAATACCAACAACTTGGTCAAGGCTGTTAATTCTGTCGACTCACGAATCTCCAGCGAAGATGTTTCACTATCTACAACAACCACTACTAATACTACTAGCGATGGTGATGATCAGTTAGGAAGTTCGCCAACGAATTTTATGATGGATTTCAATACTGATGATCACGAGGACTTCTGCAAAATACTGGACTGTGACTTTGCAAATCTGAACAATGCCATTGATGGAGATGATGAGCATCAAGGTAGTCCAGTTTTAGTACTACCTAAGCAGATGATGGACAAGAATATTCAAGCTGCTGATTTTGGGTCCTTGGCTTCATTTCTGGAGTCTGATGAGGATTGGCTTGGGAATGATCTAAATGTCATGTTGAGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-binding

Protein Analysis

267

Amino Acids

29.57

Weight (kDa)

4.84

Isoelectric Point (pI)

48.35

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-binding PF00249 28 - 73 2.1e-16 Myb-like DNA-binding domain
Myb_DNA-bind_6 PF13921 32 - 80 1.3e-07 Myb-like DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0017611)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g36950 FvH4_2g36950
rosa_chinensis RchiOBHm_Chr6g0304811
rosa_laevigata RLG00000010947
rosa_multiflora Rmu_sc0003120.1_g000001
rosa_roxburghii Rroxscaffold_7G00163450
rosa_rugosa Rorug06G0335000
rosa_samantha Rh6AG446700 Rh6BG454900 Rh6CG460200 Rh6DG447100
rosa_wichuraiana Rw6G038870

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 5
AccI GTMKAC 1 cut(s) 465
AciI CCGC 1 cut(s) 305
AcoI YGGCCR 2 cut(s) 347, 420
AcsI RAATTY 1 cut(s) 562
AfaI GTAC 2 cut(s) 361, 687
AfiI CCNNNNNNNGG 1 cut(s) 295
AflII CTTAAG 1 cut(s) 20
AgsI TTSAA 2 cut(s) 580, 719
AhlI ACTAGT 1 cut(s) 356
AjnI CCWGG 1 cut(s) 294
AluBI AGCT 5 cut(s) 39, 133, 239, 374, 722
AluI AGCT 5 cut(s) 39, 133, 239, 374, 722
Alw26I GTCTC 2 cut(s) 61, 156
Ama87I CYCGRG 1 cut(s) 173
AoxI GGCC 2 cut(s) 347, 420
ApeKI GCWGC 8 cut(s) 39, 87, 301, 307, 310, 368, 371, 722
ApoI RAATTY 1 cut(s) 562
ArsI GACNNNNNNTTYG 2 cut(s) 608, 640
AspA2I CCTAGG 1 cut(s) 136
AspLEI GCGC 1 cut(s) 301
AspS9I GGNCC 1 cut(s) 735
AsuC2I CCSGG 2 cut(s) 174, 175
AsuHPI GGTGA 2 cut(s) 16, 545
AvaI CYCGRG 1 cut(s) 173
AvaII GGWCC 1 cut(s) 735
AvrII CCTAGG 1 cut(s) 136
BalI TGGCCA 1 cut(s) 422
BauI CACGAG 1 cut(s) 593
BbsI GAAGAC 1 cut(s) 172
BbvI GCAGC 8 cut(s) 26, 99, 313, 319, 322, 355, 383, 709
BccI CCATC 6 cut(s) 141, 431, 524, 565, 644, 697
BceAI ACGGC 1 cut(s) 362
BciT130I CCWGG 1 cut(s) 296
BclI TGATCA 2 cut(s) 538, 589
BcnI CCSGG 2 cut(s) 174, 175
BcoDI GTCTC 2 cut(s) 61, 156
BcuI ACTAGT 1 cut(s) 356
BfaI CTAG 4 cut(s) 137, 357, 375, 525
BfmI CTRYAG 1 cut(s) 369
BfrI CTTAAG 1 cut(s) 20
BfuAI ACCTGC 1 cut(s) 5
BisI GCNGC 9 cut(s) 40, 88, 302, 305, 308, 311, 369, 372, 723
BlnI CCTAGG 1 cut(s) 136
BlsI GCNGC 9 cut(s) 41, 89, 303, 306, 309, 312, 370, 373, 724
BmcAI AGTACT 2 cut(s) 361, 687
Bme1390I CCNGG 3 cut(s) 174, 175, 296
Bme18I GGWCC 1 cut(s) 735
BmeT110I CYCGRG 1 cut(s) 173
BmgT120I GGNCC 1 cut(s) 735
BmiI GGNNCC 1 cut(s) 736
BmrFI CCNGG 3 cut(s) 174, 175, 296
BmsI GCATC 1 cut(s) 673
BpiI GAAGAC 1 cut(s) 172
BpmI CTGGAG 2 cut(s) 463, 773
Bpu10I CCTNAGC 1 cut(s) 693
BpuMI CCSGG 2 cut(s) 174, 175
BsaBI GATNNNNATC 1 cut(s) 663
BsaI GGTCTC 2 cut(s) 61, 156
BsaJI CCNNGG 4 cut(s) 136, 173, 344, 738
BsaXI ACNNNNNCTCC 2 cut(s) 194, 224
Bsc4I CCNNNNNNNGG 1 cut(s) 295
Bse118I RCCGGY 1 cut(s) 42
Bse1I ACTGG 3 cut(s) 209, 618, 677
Bse3DI GCAATG 1 cut(s) 320
Bse8I GATNNNNATC 1 cut(s) 663
BseBI CCWGG 1 cut(s) 296
BseDI CCNNGG 4 cut(s) 136, 173, 344, 738
BseGI GGATG 1 cut(s) 60
BseJI GATNNNNATC 1 cut(s) 663
BseLI CCNNNNNNNGG 1 cut(s) 295
BseMI GCAATG 1 cut(s) 320
BseMII CTCAG 2 cut(s) 56, 266
BseNI ACTGG 3 cut(s) 209, 618, 677
BseXI GCAGC 8 cut(s) 26, 99, 313, 319, 322, 355, 383, 709
BshFI GGCC 2 cut(s) 349, 422
BsiHKCI CYCGRG 1 cut(s) 173
BsiSI CCGG 2 cut(s) 43, 174
BslI CCNNNNNNNGG 1 cut(s) 295
BsmAI GTCTC 2 cut(s) 61, 156
BsnI GGCC 2 cut(s) 349, 422
Bso31I GGTCTC 2 cut(s) 61, 156
BsoBI CYCGRG 1 cut(s) 173
Bsp143I GATC 4 cut(s) 156, 538, 589, 781
BspACI CCGC 1 cut(s) 305
BspANI GGCC 2 cut(s) 349, 422
BspCNI CTCAG 2 cut(s) 57, 265
BspLI GGNNCC 1 cut(s) 736
BspMAI CTGCAG 1 cut(s) 373
BspMI ACCTGC 1 cut(s) 5
BspQI GCTCTTC 1 cut(s) 29
BspTI CTTAAG 1 cut(s) 20
BspTNI GGTCTC 2 cut(s) 61, 156
BsrDI GCAATG 1 cut(s) 320
BsrFI RCCGGY 1 cut(s) 42
BsrI ACTGG 3 cut(s) 209, 618, 677
BssAI RCCGGY 1 cut(s) 42
BssECI CCNNGG 4 cut(s) 136, 173, 344, 738
BssMI GATC 4 cut(s) 156, 538, 589, 781
BssSI CACGAG 1 cut(s) 593
BssT1I CCWWGG 2 cut(s) 136, 738
Bst2BI CACGAG 1 cut(s) 593
Bst2UI CCWGG 1 cut(s) 296
Bst4CI ACNGT 2 cut(s) 334, 620
Bst6I CTCTTC 1 cut(s) 29
BstAFI CTTAAG 1 cut(s) 20
BstC8I GCNNGC 1 cut(s) 44
BstDEI CTNAG 4 cut(s) 65, 217, 252, 693
BstDSI CCRYGG 1 cut(s) 344
BstF5I GGATG 1 cut(s) 60
BstHHI GCGC 1 cut(s) 301
BstKTI GATC 4 cut(s) 159, 541, 592, 784
BstMAI GTCTC 2 cut(s) 61, 156
BstMBI GATC 4 cut(s) 156, 538, 589, 781
BstMWI GCNNNNNNNGC 2 cut(s) 307, 310
BstNI CCWGG 1 cut(s) 296
BstSCI CCNGG 3 cut(s) 172, 173, 294
BstSFI CTRYAG 1 cut(s) 369
BstV1I GCAGC 8 cut(s) 26, 99, 313, 319, 322, 355, 383, 709
BstV2I GAAGAC 1 cut(s) 172
BstXI CCANNNNNNTGG 2 cut(s) 229, 442
BsuRI GGCC 2 cut(s) 349, 422
BtgI CCRYGG 1 cut(s) 344
BtgZI GCGATG 1 cut(s) 543
BtsCI GGATG 1 cut(s) 60
BtsIMutI CAGTG 1 cut(s) 330
BveI ACCTGC 1 cut(s) 5
Cac8I GCNNGC 1 cut(s) 44
CfoI GCGC 1 cut(s) 301
Cfr10I RCCGGY 1 cut(s) 42
Cfr13I GGNCC 1 cut(s) 735
Cfr9I CCCGGG 1 cut(s) 173
Csp6I GTAC 2 cut(s) 360, 686
CviAII CATG 1 cut(s) 793
CviQI GTAC 2 cut(s) 360, 686
DdeI CTNAG 4 cut(s) 65, 217, 252, 693
DpnI GATC 4 cut(s) 158, 540, 591, 783
DpnII GATC 4 cut(s) 156, 538, 589, 781
EaeI YGGCCR 2 cut(s) 347, 420
Eam1104I CTCTTC 1 cut(s) 29
EarI CTCTTC 1 cut(s) 29
Eco130I CCWWGG 2 cut(s) 136, 738
Eco31I GGTCTC 2 cut(s) 61, 156
Eco47I GGWCC 1 cut(s) 735
Eco88I CYCGRG 1 cut(s) 173
EcoO109I RGGNCCY 1 cut(s) 735
EcoRII CCWGG 1 cut(s) 294
EcoT14I CCWWGG 2 cut(s) 136, 738
ErhI CCWWGG 2 cut(s) 136, 738
FaeI CATG 1 cut(s) 796
FaiI YATR 6 cut(s) 10, 12, 129, 390, 569, 794
FatI CATG 1 cut(s) 792
FbaI TGATCA 2 cut(s) 538, 589
FblI GTMKAC 1 cut(s) 465
Fnu4HI GCNGC 9 cut(s) 40, 88, 302, 305, 308, 311, 369, 372, 723
FokI GGATG 1 cut(s) 67
Fsp4HI GCNGC 9 cut(s) 40, 88, 302, 305, 308, 311, 369, 372, 723
FspBI CTAG 4 cut(s) 137, 357, 375, 525
GlaI GCGC 1 cut(s) 300
GluI GCNGC 9 cut(s) 40, 88, 302, 305, 308, 311, 369, 372, 723
GsuI CTGGAG 2 cut(s) 463, 773
HaeIII GGCC 2 cut(s) 349, 422
HapII CCGG 2 cut(s) 43, 174
HhaI GCGC 1 cut(s) 301
Hin1II CATG 1 cut(s) 796
Hin6I GCGC 1 cut(s) 299
HinP1I GCGC 1 cut(s) 299
HincII GTYRAC 1 cut(s) 466
HindII GTYRAC 1 cut(s) 466
HinfI GANTC 4 cut(s) 123, 467, 474, 755
HpaII CCGG 2 cut(s) 43, 174
HphI GGTGA 2 cut(s) 16, 545
Hpy166II GTNNAC 2 cut(s) 380, 466
Hpy188I TCNGA 6 cut(s) 66, 97, 122, 156, 636, 760
Hpy188III TCNNGA 4 cut(s) 196, 471, 593, 752
Hpy8I GTNNAC 2 cut(s) 380, 466
HpyCH4III ACNGT 2 cut(s) 334, 620
HpyCH4V TGCA 6 cut(s) 14, 264, 318, 371, 606, 629
HpyF10VI GCNNNNNNNGC 2 cut(s) 307, 310
HpyF3I CTNAG 4 cut(s) 65, 217, 252, 693
Hsp92II CATG 1 cut(s) 796
HspAI GCGC 1 cut(s) 299
KroI GCCGGC 1 cut(s) 42
KroNI GCCGGC 1 cut(s) 44
Ksp22I TGATCA 2 cut(s) 538, 589
Kzo9I GATC 4 cut(s) 156, 538, 589, 781
LguI GCTCTTC 1 cut(s) 29
LmnI GCTCC 1 cut(s) 138
Lsp1109I GCAGC 8 cut(s) 26, 99, 313, 319, 322, 355, 383, 709
LweI GCATC 1 cut(s) 673
MaeI CTAG 4 cut(s) 137, 357, 375, 525
MaeIII GTNAC 1 cut(s) 620
MalI GATC 4 cut(s) 158, 540, 591, 783
MboI GATC 4 cut(s) 156, 538, 589, 781
MboII GAAGA 5 cut(s) 46, 116, 119, 177, 497
MlsI TGGCCA 1 cut(s) 422
MluCI AATT 3 cut(s) 199, 457, 562
MluNI TGGCCA 1 cut(s) 422
MlyI GAGTC 3 cut(s) 117, 461, 764
MmeI TCCRAC 1 cut(s) 237
MnlI CCTC 4 cut(s) 77, 396, 589, 757
Mox20I TGGCCA 1 cut(s) 422
MroNI GCCGGC 1 cut(s) 42
MscI TGGCCA 1 cut(s) 422
MseI TTAA 4 cut(s) 21, 78, 456, 802
Msp20I TGGCCA 1 cut(s) 422
MspCI CTTAAG 1 cut(s) 20
MspI CCGG 2 cut(s) 43, 174
MspR9I CCNGG 3 cut(s) 174, 175, 296
MvaI CCWGG 1 cut(s) 296
MwoI GCNNNNNNNGC 2 cut(s) 307, 310
NaeI GCCGGC 1 cut(s) 44
NciI CCSGG 2 cut(s) 174, 175
NdeII GATC 4 cut(s) 156, 538, 589, 781
NgoMIV GCCGGC 1 cut(s) 42
NlaIII CATG 1 cut(s) 796
NlaIV GGNNCC 1 cut(s) 736
NmuCI GTSAC 1 cut(s) 620
PciSI GCTCTTC 1 cut(s) 29
PdiI GCCGGC 1 cut(s) 44
PfeI GAWTC 1 cut(s) 474
PkrI GCNGC 9 cut(s) 41, 89, 303, 306, 309, 312, 370, 373, 724
PleI GAGTC 3 cut(s) 117, 461, 763
PpsI GAGTC 3 cut(s) 117, 461, 763
PpuMI RGGWCCY 1 cut(s) 735
Psp5II RGGWCCY 1 cut(s) 735
Psp6I CCWGG 1 cut(s) 294
PspGI CCWGG 1 cut(s) 294
PspN4I GGNNCC 1 cut(s) 736
PspPI GGNCC 1 cut(s) 735
PspPPI RGGWCCY 1 cut(s) 735
PstI CTGCAG 1 cut(s) 373
RsaI GTAC 2 cut(s) 361, 687
RsaNI GTAC 2 cut(s) 360, 686
SalI GTCGAC 1 cut(s) 464
SapI GCTCTTC 1 cut(s) 29
SaqAI TTAA 4 cut(s) 21, 78, 456, 802
SatI GCNGC 9 cut(s) 40, 88, 302, 305, 308, 311, 369, 372, 723
Sau3AI GATC 4 cut(s) 156, 538, 589, 781
Sau96I GGNCC 1 cut(s) 735
ScaI AGTACT 2 cut(s) 361, 687
SchI GAGTC 3 cut(s) 117, 461, 764
ScrFI CCNGG 3 cut(s) 174, 175, 296
SetI ASST 9 cut(s) 19, 41, 135, 241, 355, 376, 673, 694, 724
SfaNI GCATC 1 cut(s) 673
SfcI CTRYAG 1 cut(s) 369
SinI GGWCC 1 cut(s) 735
SmaI CCCGGG 1 cut(s) 175
SmlI CTYRAG 1 cut(s) 20
SmoI CTYRAG 1 cut(s) 20
SpeI ACTAGT 1 cut(s) 356
Sse9I AATT 3 cut(s) 199, 457, 562
SsiI CCGC 1 cut(s) 305
SspI AATATT 1 cut(s) 715
SspMI CTAG 4 cut(s) 137, 357, 375, 525
StyD4I CCNGG 3 cut(s) 172, 173, 294
StyI CCWWGG 2 cut(s) 136, 738
TaaI ACNGT 2 cut(s) 334, 620
TaqI TCGA 1 cut(s) 465
TasI AATT 3 cut(s) 199, 457, 562
TatI WGTACW 2 cut(s) 359, 685
TauI GCSGC 1 cut(s) 307
TfiI GAWTC 1 cut(s) 474
Tru1I TTAA 4 cut(s) 21, 78, 456, 802
Tru9I TTAA 4 cut(s) 21, 78, 456, 802
TscAI CASTG 1 cut(s) 337
TseFI GTSAC 1 cut(s) 620
TseI GCWGC 8 cut(s) 39, 87, 301, 307, 310, 368, 371, 722
Tsp45I GTSAC 1 cut(s) 620
TspDTI ATGAA 5 cut(s) 71, 117, 204, 237, 735
TspMI CCCGGG 1 cut(s) 173
TspRI CASTG 1 cut(s) 337
Vha464I CTTAAG 1 cut(s) 20
VpaK11BI GGWCC 1 cut(s) 735
XapI RAATTY 1 cut(s) 562
XmaI CCCGGG 1 cut(s) 173
XmaJI CCTAGG 1 cut(s) 136
XmiI GTMKAC 1 cut(s) 465
XspI CTAG 4 cut(s) 137, 357, 375, 525
ZrmI AGTACT 2 cut(s) 361, 687
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.