Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7D

Orthogroup ID

OG0017666

Physical Location & Seq

Genomic Coordinates Forward (+)

4959029 .. 4959717

Gene Structure 689 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7DG063700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 612 bp

ATGGCTAAGATGGAAGGGGTTGTGCAGACTGATTTGTCAAAAGCAACCAACTTCCTCCATCATTGTCGCATTGGGCTGGATGCAATGTACGACCATCCCGTGCGTTGTGTTACCTTAAATCTTCAAACCATCTCTAATGAGCTGGTCTCGCTTTACATTCCTCTCTTTCAGTGTCAGTGGCAACATTTGAAATGGCTAGTGGAAGCATTCGCCCCTCCTTCAGGCATTCCTCCTTGGACATATGCTGCAAGAGCTTATATCTCTGCATGGATCCACCATCTATATGTTTCAATTTCCAAGGCAGCTCAGAAATACTATGACTGCCTATTCGCCCTGCTCACATTAAGGGAGCTATTGGAGACACTATTTATATTCCCATTCTCAATGAATGTCCAGCTTGGAATACTGATAATCGATCCATTCCACATTGAGAACTATGTTGTGGACTATCATTTGGTTTCAGGTAAAATTCAGAATGTTAAAGGATGGAAAATTTCAACCATTGTATCGAACAAGCTAGGACGCCCCTCCTGGCTGTTTGACTGGCATGAAGAGAAAAAGTGTTGCATGCATGTGCTTGGTTTTCTCCTGAAGGGACTATATAATGGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-binding S10_plectin

Protein Analysis

203

Amino Acids

23.46

Weight (kDa)

8.18

Isoelectric Point (pI)

37.18

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0017666)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g13091 FvH4_5g13100
rosa_laevigata	RLG00000005007
rosa_roxburghii	Rroxscaffold_3G00269960
rosa_samantha	Rh7AG063100 Rh7AG063200 Rh7AG063300 Rh7BG063300 Rh7BG063400 Rh7CG064300 Rh7DG063700 Rh7DG063800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	34
AclWI	GGATC	3 cut(s)	265, 278, 410
AcsI	RAATTY	2 cut(s)	468, 492
AcuI	CTGAAG	2 cut(s)	204, 611
AcyI	GRCGYC	1 cut(s)	523
AfaI	GTAC	1 cut(s)	89
AfiI	CCNNNNNNNGG	1 cut(s)	221
AgsI	TTSAA	4 cut(s)	125, 190, 291, 498
AjnI	CCWGG	1 cut(s)	530
AluBI	AGCT	6 cut(s)	142, 254, 305, 352, 397, 517
AluI	AGCT	6 cut(s)	142, 254, 305, 352, 397, 517
Alw26I	GTCTC	2 cut(s)	151, 353
AlwI	GGATC	3 cut(s)	265, 278, 410
ApeKI	GCWGC	2 cut(s)	245, 302
ApoI	RAATTY	2 cut(s)	468, 492
ArsI	GACNNNNNNTTYG	2 cut(s)	311, 343
BaeI	ACNNNNGTAYC	2 cut(s)	489, 522
BamHI	GGATCC	1 cut(s)	270
BbvI	GCAGC	2 cut(s)	232, 314
BccI	CCATC	6 cut(s)	4, 66, 102, 137, 285, 480
BciT130I	CCWGG	1 cut(s)	532
BcoDI	GTCTC	2 cut(s)	151, 353
BfaI	CTAG	2 cut(s)	197, 518
BisI	GCNGC	2 cut(s)	246, 303
BlsI	GCNGC	2 cut(s)	247, 304
Bme1390I	CCNGG	1 cut(s)	532
BmiI	GGNNCC	1 cut(s)	272
BmrFI	CCNGG	1 cut(s)	532
BmsI	GCATC	1 cut(s)	70
BplI	GAGNNNNNCTC	2 cut(s)	131, 163
Bsa29I	ATCGAT	1 cut(s)	414
BsaHI	GRCGYC	1 cut(s)	523
BsaI	GGTCTC	1 cut(s)	151
BsaJI	CCNNGG	2 cut(s)	233, 297
Bsc4I	CCNNNNNNNGG	1 cut(s)	221
Bse1I	ACTGG	1 cut(s)	548
Bse3DI	GCAATG	1 cut(s)	90
BseBI	CCWGG	1 cut(s)	532
BseCI	ATCGAT	1 cut(s)	414
BseDI	CCNNGG	2 cut(s)	233, 297
BseGI	GGATG	3 cut(s)	85, 94, 491
BseLI	CCNNNNNNNGG	1 cut(s)	221
BseMI	GCAATG	1 cut(s)	90
BseMII	CTCAG	1 cut(s)	320
BseNI	ACTGG	1 cut(s)	548
BseXI	GCAGC	2 cut(s)	232, 314
BsgI	GTGCAG	1 cut(s)	44
BshVI	ATCGAT	1 cut(s)	414
BslI	CCNNNNNNNGG	1 cut(s)	221
BsmAI	GTCTC	2 cut(s)	151, 353
BsmI	GAATGC	2 cut(s)	206, 225
Bso31I	GGTCTC	1 cut(s)	151
Bsp143I	GATC	2 cut(s)	270, 415
BspCNI	CTCAG	1 cut(s)	319
BspDI	ATCGAT	1 cut(s)	414
BspLI	GGNNCC	1 cut(s)	272
BspPI	GGATC	3 cut(s)	265, 278, 410
BspTNI	GGTCTC	1 cut(s)	151
BsrDI	GCAATG	1 cut(s)	90
BsrI	ACTGG	1 cut(s)	548
BssECI	CCNNGG	2 cut(s)	233, 297
BssMI	GATC	2 cut(s)	270, 415
BssNI	GRCGYC	1 cut(s)	523
BssT1I	CCWWGG	2 cut(s)	233, 297
Bst2UI	CCWGG	1 cut(s)	532
Bst6I	CTCTTC	1 cut(s)	546
BstACI	GRCGYC	1 cut(s)	523
BstC8I	GCNNGC	1 cut(s)	569
BstDEI	CTNAG	2 cut(s)	6, 306
BstENI	CCTNNNNNAGG	1 cut(s)	219
BstF5I	GGATG	3 cut(s)	85, 94, 491
BstKTI	GATC	2 cut(s)	273, 418
BstMAI	GTCTC	2 cut(s)	151, 353
BstMBI	GATC	2 cut(s)	270, 415
BstMWI	GCNNNNNNNGC	2 cut(s)	148, 251
BstNI	CCWGG	1 cut(s)	532
BstNSI	RCATGY	2 cut(s)	571, 575
BstSCI	CCNGG	1 cut(s)	530
BstV1I	GCAGC	2 cut(s)	232, 314
BstX2I	RGATCY	1 cut(s)	270
BstYI	RGATCY	1 cut(s)	270
Bsu15I	ATCGAT	1 cut(s)	414
BsuTUI	ATCGAT	1 cut(s)	414
BtsCI	GGATG	3 cut(s)	85, 94, 491
BtsIMutI	CAGTG	2 cut(s)	176, 182
Cac8I	GCNNGC	1 cut(s)	569
ClaI	ATCGAT	1 cut(s)	414
CseI	GACGC	1 cut(s)	531
Csp6I	GTAC	1 cut(s)	88
CviAII	CATG	4 cut(s)	267, 548, 568, 572
CviQI	GTAC	1 cut(s)	88
DdeI	CTNAG	2 cut(s)	6, 306
DpnI	GATC	2 cut(s)	272, 417
DpnII	GATC	2 cut(s)	270, 415
DrdI	GACNNNNNNGTC	1 cut(s)	34
DseDI	GACNNNNNNGTC	1 cut(s)	34
Eam1104I	CTCTTC	1 cut(s)	546
EarI	CTCTTC	1 cut(s)	546
Eco130I	CCWWGG	2 cut(s)	233, 297
Eco31I	GGTCTC	1 cut(s)	151
Eco57I	CTGAAG	2 cut(s)	204, 611
EcoNI	CCTNNNNNAGG	1 cut(s)	219
EcoRII	CCWGG	1 cut(s)	530
EcoT14I	CCWWGG	2 cut(s)	233, 297
EcoT22I	ATGCAT	1 cut(s)	573
ErhI	CCWWGG	2 cut(s)	233, 297
FaeI	CATG	4 cut(s)	270, 551, 571, 575
FatI	CATG	4 cut(s)	266, 547, 567, 571
FauNDI	CATATG	1 cut(s)	241
Fnu4HI	GCNGC	2 cut(s)	246, 303
FokI	GGATG	3 cut(s)	81, 92, 498
Fsp4HI	GCNGC	2 cut(s)	246, 303
FspBI	CTAG	2 cut(s)	197, 518
GluI	GCNGC	2 cut(s)	246, 303
HgaI	GACGC	1 cut(s)	531
Hin1I	GRCGYC	1 cut(s)	523
Hin1II	CATG	4 cut(s)	270, 551, 571, 575
Hpy166II	GTNNAC	1 cut(s)	445
Hpy188I	TCNGA	2 cut(s)	309, 474
Hpy188III	TCNNGA	1 cut(s)	589
Hpy8I	GTNNAC	1 cut(s)	445
HpyAV	CCTTC	3 cut(s)	8, 228, 586
HpyCH4V	TGCA	6 cut(s)	25, 83, 248, 266, 567, 571
HpyF10VI	GCNNNNNNNGC	2 cut(s)	148, 251
HpyF3I	CTNAG	2 cut(s)	6, 306
Hsp92I	GRCGYC	1 cut(s)	523
Hsp92II	CATG	4 cut(s)	270, 551, 571, 575
Kzo9I	GATC	2 cut(s)	270, 415
LmnI	GCTCC	1 cut(s)	349
Lsp1109I	GCAGC	2 cut(s)	232, 314
LweI	GCATC	1 cut(s)	70
MaeI	CTAG	2 cut(s)	197, 518
MaeIII	GTNAC	1 cut(s)	109
MalI	GATC	2 cut(s)	272, 417
MboI	GATC	2 cut(s)	270, 415
MboII	GAAGA	2 cut(s)	113, 563
MflI	RGATCY	1 cut(s)	270
MluCI	AATT	3 cut(s)	291, 468, 492
MnlI	CCTC	5 cut(s)	65, 171, 225, 240, 538
Mph1103I	ATGCAT	1 cut(s)	573
MseI	TTAA	3 cut(s)	116, 344, 480
MslI	CAYNNNNRTG	2 cut(s)	282, 572
MspR9I	CCNGG	1 cut(s)	532
Mva1269I	GAATGC	2 cut(s)	206, 225
MvaI	CCWGG	1 cut(s)	532
MwoI	GCNNNNNNNGC	2 cut(s)	148, 251
NdeI	CATATG	1 cut(s)	241
NdeII	GATC	2 cut(s)	270, 415
NlaIII	CATG	4 cut(s)	270, 551, 571, 575
NlaIV	GGNNCC	1 cut(s)	272
NsiI	ATGCAT	1 cut(s)	573
NspI	RCATGY	2 cut(s)	571, 575
PaeI	GCATGC	1 cut(s)	571
PcsI	WCGNNNNNNNCGW	1 cut(s)	96
PctI	GAATGC	2 cut(s)	206, 225
PkrI	GCNGC	2 cut(s)	247, 304
Psp6I	CCWGG	1 cut(s)	530
PspGI	CCWGG	1 cut(s)	530
PspN4I	GGNNCC	1 cut(s)	272
PsuI	RGATCY	1 cut(s)	270
RsaI	GTAC	1 cut(s)	89
RsaNI	GTAC	1 cut(s)	88
RseI	CAYNNNNRTG	2 cut(s)	282, 572
SaqAI	TTAA	3 cut(s)	116, 344, 480
SatI	GCNGC	2 cut(s)	246, 303
Sau3AI	GATC	2 cut(s)	270, 415
ScrFI	CCNGG	1 cut(s)	532
SetI	ASST	8 cut(s)	116, 144, 256, 307, 354, 399, 466, 519
SfaNI	GCATC	1 cut(s)	70
SmiMI	CAYNNNNRTG	2 cut(s)	282, 572
SphI	GCATGC	1 cut(s)	571
Sse9I	AATT	3 cut(s)	291, 468, 492
SspMI	CTAG	2 cut(s)	197, 518
StyD4I	CCNGG	1 cut(s)	530
StyI	CCWWGG	2 cut(s)	233, 297
TaqI	TCGA	2 cut(s)	414, 509
TasI	AATT	3 cut(s)	291, 468, 492
Tru1I	TTAA	3 cut(s)	116, 344, 480
Tru9I	TTAA	3 cut(s)	116, 344, 480
TscAI	CASTG	2 cut(s)	176, 182
TseI	GCWGC	2 cut(s)	245, 302
TspDTI	ATGAA	2 cut(s)	401, 564
TspRI	CASTG	2 cut(s)	176, 182
XagI	CCTNNNNNAGG	1 cut(s)	219
XapI	RAATTY	2 cut(s)	468, 492
XceI	RCATGY	2 cut(s)	571, 575
XspI	CTAG	2 cut(s)	197, 518
Zsp2I	ATGCAT	1 cut(s)	573

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.