FvH4_5g13091
MYB Family

Transcription factor ASG4-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb5
OG0017666
Physical Location & Seq
Reverse (-)
7383680 .. 7384820
1141 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_5g13091.t1

Sequence Viewer

Length: 1035 bp
ATGGATAAGAAGGAAGAGATTGTGCAGACTGATTTGTCAAAAGCAAGCAACTTCCTCCATAATTGTCGCATTGGCCTGGATTGCATGTACGACCATCCCGTGCGTTGTGTCACCTTAAATCTACAAACCATCTTTGATGAACTGGTCTCGCTTTACATTCCTCTCTTTCAGTGTCAATCGCAACATTTGAAATGGCTAGTGGAAGCATTTGCCCCTCCTTCAGGCATTTCCCCTTGGACATACGCAGCAAGAGCATATATCTCTGCATGGATCCACGATCTATACGTTTCAAATTCCATGGCACTATTCGCCCTACGTACTCCCATTAAGGGAGGTATTGGAGACACTACTTATATTCCCATTCTCAATGGAAGTCCAGCTTGGAATACTGATAATCCATTCCACATTGAGAATTATGTTGTGGATTATCATTTGGTTTCAGGAATAATTCGGAATGTAAAAGGATGGAGAATTTCAACCATTCTATCGAACAAGCTAGGACGCCCCTCCTGGCTGTTTGACTGGCATGAGGAGAAACGGTGTTGTGCTTGGTTTCCTCCTGAGGGAAACTATACAATGGATGATGTTACTATTGCCTACATTGTCGGAGCAGCCTGTACTCCACATCTTGGACCTAGAGACGTTGATGATTGGCAGACTGGAACTTTGCCTGAAAATGTCCATCTCTTCTACTATGAGCGTGTTGCGGGTCGAGGTTTCTATGGTGCATATGAGGTCAGGACCATTGAACAAAGAGATATGGTCCAAACAGTTGTTGAGGATAGTCAGGAAACATTCCAAGGCCATTCTCCTACCAAAAAGAAGAGGACTTCCACTTCAAATGCTGCAGCAGACACTGGAAGCGAGCCATCTGAAGAGGCCATGGCTGCTGACTTTAAGCAACTTGATGCCTTACAGCTAAAGACTAAGCAGTTCCGAATTATTGATTGGATTTACTACTGCCTTGTTGTCAAGGAGATGAATTCCCTTACTAGGTCGCGTGCTCTCTGCTTCGTTGTGCAAAATTCAGATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-binding S10_plectin

Protein Analysis

345

Amino Acids

39.25

Weight (kDa)

5.7

Isoelectric Point (pI)

46.32

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 34
AccB7I CCANNNNNTGG 1 cut(s) 629
AccII CGCG 1 cut(s) 1000
AciI CCGC 1 cut(s) 707
AclWI GGATC 2 cut(s) 265, 278
AcsI RAATTY 4 cut(s) 292, 471, 982, 1024
AcuI CTGAAG 2 cut(s) 204, 894
AcyI GRCGYC 1 cut(s) 502
AfaI GTAC 3 cut(s) 89, 319, 619
AfiI CCNNNNNNNGG 5 cut(s) 221, 329, 563, 629, 993
AgsI TTSAA 5 cut(s) 190, 291, 477, 749, 840
AjnI CCWGG 2 cut(s) 75, 509
AjuI GAANNNNNNNTTGG 4 cut(s) 364, 396, 931, 963
AluBI AGCT 3 cut(s) 380, 496, 919
AluI AGCT 3 cut(s) 380, 496, 919
Alw21I GWGCWC 1 cut(s) 1006
Alw26I GTCTC 3 cut(s) 151, 336, 633
AlwI GGATC 2 cut(s) 265, 278
AlwNI CAGNNNCTG 1 cut(s) 857
AoxI GGCC 3 cut(s) 73, 802, 879
ApeKI GCWGC 5 cut(s) 245, 611, 845, 848, 887
ApoI RAATTY 4 cut(s) 292, 471, 982, 1024
ArsI GACNNNNNNTTYG 2 cut(s) 649, 681
AspS9I GGNCC 3 cut(s) 632, 741, 763
AsuHPI GGTGA 1 cut(s) 103
AvaII GGWCC 3 cut(s) 632, 741, 763
AxyI CCTNAGG 1 cut(s) 561
BamHI GGATCC 1 cut(s) 270
Bbv12I GWGCWC 1 cut(s) 1006
BbvI GCAGC 5 cut(s) 257, 623, 832, 860, 874
BccI CCATC 5 cut(s) 102, 137, 459, 690, 877
BciT130I CCWGG 2 cut(s) 77, 511
BcoDI GTCTC 3 cut(s) 151, 336, 633
BfaI CTAG 4 cut(s) 197, 497, 636, 993
BfmI CTRYAG 1 cut(s) 846
BisI GCNGC 5 cut(s) 246, 612, 846, 849, 888
BlsI GCNGC 5 cut(s) 247, 613, 847, 850, 889
Bme1390I CCNGG 2 cut(s) 77, 511
Bme18I GGWCC 3 cut(s) 632, 741, 763
BmgT120I GGNCC 3 cut(s) 632, 741, 763
BmiI GGNNCC 1 cut(s) 272
BmrFI CCNGG 2 cut(s) 77, 511
BmsI GCATC 1 cut(s) 898
BsaAI YACGTR 1 cut(s) 317
BsaHI GRCGYC 1 cut(s) 502
BsaI GGTCTC 1 cut(s) 151
BsaJI CCNNGG 4 cut(s) 233, 297, 799, 882
BsaXI ACNNNNNCTCC 2 cut(s) 524, 554
Bsc4I CCNNNNNNNGG 5 cut(s) 221, 329, 563, 629, 993
Bse1I ACTGG 4 cut(s) 147, 527, 664, 862
Bse21I CCTNAGG 1 cut(s) 561
BseBI CCWGG 2 cut(s) 77, 511
BseDI CCNNGG 4 cut(s) 233, 297, 799, 882
BseGI GGATG 3 cut(s) 94, 470, 586
BseLI CCNNNNNNNGG 5 cut(s) 221, 329, 563, 629, 993
BseMII CTCAG 1 cut(s) 552
BseNI ACTGG 4 cut(s) 147, 527, 664, 862
BseRI GAGGAG 1 cut(s) 545
BseXI GCAGC 5 cut(s) 257, 623, 832, 860, 874
BsgI GTGCAG 1 cut(s) 44
Bsh1236I CGCG 1 cut(s) 1000
BshFI GGCC 3 cut(s) 75, 804, 881
BsiHKAI GWGCWC 1 cut(s) 1006
BslI CCNNNNNNNGG 5 cut(s) 221, 329, 563, 629, 993
BsmAI GTCTC 3 cut(s) 151, 336, 633
BsmBI CGTCTC 1 cut(s) 633
BsnI GGCC 3 cut(s) 75, 804, 881
Bso31I GGTCTC 1 cut(s) 151
Bsp1286I GDGCHC 1 cut(s) 1006
Bsp143I GATC 2 cut(s) 270, 277
Bsp19I CCATGG 2 cut(s) 297, 882
BspACI CCGC 1 cut(s) 707
BspANI GGCC 3 cut(s) 75, 804, 881
BspCNI CTCAG 1 cut(s) 553
BspFNI CGCG 1 cut(s) 1000
BspLI GGNNCC 1 cut(s) 272
BspMAI CTGCAG 1 cut(s) 850
BspPI GGATC 2 cut(s) 265, 278
BspTNI GGTCTC 1 cut(s) 151
BsrI ACTGG 4 cut(s) 147, 527, 664, 862
BssECI CCNNGG 4 cut(s) 233, 297, 799, 882
BssMI GATC 2 cut(s) 270, 277
BssNI GRCGYC 1 cut(s) 502
BssT1I CCWWGG 4 cut(s) 233, 297, 799, 882
Bst2UI CCWGG 2 cut(s) 77, 511
Bst4CI ACNGT 2 cut(s) 540, 772
Bst6I CTCTTC 4 cut(s) 9, 692, 818, 870
BstACI GRCGYC 1 cut(s) 502
BstBAI YACGTR 1 cut(s) 317
BstC8I GCNNGC 3 cut(s) 46, 866, 1002
BstDEI CTNAG 2 cut(s) 561, 927
BstDSI CCRYGG 2 cut(s) 297, 882
BstENI CCTNNNNNAGG 1 cut(s) 219
BstF5I GGATG 3 cut(s) 94, 470, 586
BstFNI CGCG 1 cut(s) 1000
BstKTI GATC 2 cut(s) 273, 280
BstMAI GTCTC 3 cut(s) 151, 336, 633
BstMBI GATC 2 cut(s) 270, 277
BstMWI GCNNNNNNNGC 4 cut(s) 81, 251, 308, 887
BstNI CCWGG 2 cut(s) 77, 511
BstNSI RCATGY 1 cut(s) 88
BstSCI CCNGG 2 cut(s) 75, 509
BstSFI CTRYAG 1 cut(s) 846
BstSNI TACGTA 1 cut(s) 317
BstUI CGCG 1 cut(s) 1000
BstV1I GCAGC 5 cut(s) 257, 623, 832, 860, 874
BstX2I RGATCY 1 cut(s) 270
BstYI RGATCY 1 cut(s) 270
Bsu36I CCTNAGG 1 cut(s) 561
BsuRI GGCC 3 cut(s) 75, 804, 881
BtgI CCRYGG 2 cut(s) 297, 882
BtsCI GGATG 3 cut(s) 94, 470, 586
BtsIMutI CAGTG 2 cut(s) 176, 855
Cac8I GCNNGC 3 cut(s) 46, 866, 1002
CaiI CAGNNNCTG 1 cut(s) 857
Cfr13I GGNCC 3 cut(s) 632, 741, 763
CseI GACGC 1 cut(s) 510
Csp6I GTAC 3 cut(s) 88, 318, 618
CviAII CATG 5 cut(s) 85, 267, 298, 527, 883
CviQI GTAC 3 cut(s) 88, 318, 618
DdeI CTNAG 2 cut(s) 561, 927
DpnI GATC 2 cut(s) 272, 279
DpnII GATC 2 cut(s) 270, 277
DrdI GACNNNNNNGTC 1 cut(s) 34
DseDI GACNNNNNNGTC 1 cut(s) 34
Eam1104I CTCTTC 4 cut(s) 9, 692, 818, 870
EarI CTCTTC 4 cut(s) 9, 692, 818, 870
Eco105I TACGTA 1 cut(s) 317
Eco130I CCWWGG 4 cut(s) 233, 297, 799, 882
Eco31I GGTCTC 1 cut(s) 151
Eco47I GGWCC 3 cut(s) 632, 741, 763
Eco57I CTGAAG 2 cut(s) 204, 894
Eco81I CCTNAGG 1 cut(s) 561
EcoNI CCTNNNNNAGG 1 cut(s) 219
EcoRI GAATTC 1 cut(s) 982
EcoRII CCWGG 2 cut(s) 75, 509
EcoT14I CCWWGG 4 cut(s) 233, 297, 799, 882
ErhI CCWWGG 4 cut(s) 233, 297, 799, 882
Esp3I CGTCTC 1 cut(s) 633
FaeI CATG 5 cut(s) 88, 270, 301, 530, 886
FalI AAGNNNNNCTT 2 cut(s) 364, 396
FatI CATG 5 cut(s) 84, 266, 297, 526, 882
FauI CCCGC 1 cut(s) 700
FauNDI CATATG 1 cut(s) 730
Fnu4HI GCNGC 5 cut(s) 246, 612, 846, 849, 888
FokI GGATG 3 cut(s) 81, 477, 593
Fsp4HI GCNGC 5 cut(s) 246, 612, 846, 849, 888
FspBI CTAG 4 cut(s) 197, 497, 636, 993
GluI GCNGC 5 cut(s) 246, 612, 846, 849, 888
HaeIII GGCC 3 cut(s) 75, 804, 881
HgaI GACGC 1 cut(s) 510
Hin1I GRCGYC 1 cut(s) 502
Hin1II CATG 5 cut(s) 88, 270, 301, 530, 886
HphI GGTGA 1 cut(s) 103
Hpy188I TCNGA 5 cut(s) 453, 608, 874, 938, 1030
Hpy188III TCNNGA 4 cut(s) 441, 560, 739, 788
HpyAV CCTTC 2 cut(s) 4, 228
HpyCH4III ACNGT 2 cut(s) 540, 772
HpyCH4IV ACGT 3 cut(s) 285, 316, 642
HpyCH4V TGCA 6 cut(s) 25, 84, 266, 728, 848, 1021
HpyF10VI GCNNNNNNNGC 4 cut(s) 81, 251, 308, 887
HpyF3I CTNAG 2 cut(s) 561, 927
HpySE526I ACGT 3 cut(s) 285, 316, 642
Hsp92I GRCGYC 1 cut(s) 502
Hsp92II CATG 5 cut(s) 88, 270, 301, 530, 886
Kzo9I GATC 2 cut(s) 270, 277
LmnI GCTCC 1 cut(s) 608
Lsp1109I GCAGC 5 cut(s) 257, 623, 832, 860, 874
LweI GCATC 1 cut(s) 898
MaeI CTAG 4 cut(s) 197, 497, 636, 993
MaeII ACGT 3 cut(s) 285, 316, 642
MaeIII GTNAC 2 cut(s) 109, 586
MalI GATC 2 cut(s) 272, 279
MboI GATC 2 cut(s) 270, 277
MboII GAAGA 4 cut(s) 26, 679, 835, 887
MflI RGATCY 1 cut(s) 270
MhlI GDGCHC 1 cut(s) 1006
MluCI AATT 8 cut(s) 61, 292, 412, 447, 471, 939, 982, 1024
MmeI TCCRAC 1 cut(s) 586
MseI TTAA 3 cut(s) 116, 327, 897
MspR9I CCNGG 2 cut(s) 77, 511
MvaI CCWGG 2 cut(s) 77, 511
MvnI CGCG 1 cut(s) 1000
MwoI GCNNNNNNNGC 4 cut(s) 81, 251, 308, 887
NcoI CCATGG 2 cut(s) 297, 882
NdeI CATATG 1 cut(s) 730
NdeII GATC 2 cut(s) 270, 277
NlaIII CATG 5 cut(s) 88, 270, 301, 530, 886
NlaIV GGNNCC 1 cut(s) 272
NmuCI GTSAC 1 cut(s) 109
NspI RCATGY 1 cut(s) 88
PcsI WCGNNNNNNNCGW 2 cut(s) 96, 282
PflMI CCANNNNNTGG 1 cut(s) 629
PkrI GCNGC 5 cut(s) 247, 613, 847, 850, 889
Ppu21I YACGTR 1 cut(s) 317
Psp6I CCWGG 2 cut(s) 75, 509
PspGI CCWGG 2 cut(s) 75, 509
PspN4I GGNNCC 1 cut(s) 272
PspPI GGNCC 3 cut(s) 632, 741, 763
PstI CTGCAG 1 cut(s) 850
PstNI CAGNNNCTG 1 cut(s) 857
PsuI RGATCY 1 cut(s) 270
RsaI GTAC 3 cut(s) 89, 319, 619
RsaNI GTAC 3 cut(s) 88, 318, 618
SaqAI TTAA 3 cut(s) 116, 327, 897
SatI GCNGC 5 cut(s) 246, 612, 846, 849, 888
Sau3AI GATC 2 cut(s) 270, 277
Sau96I GGNCC 3 cut(s) 632, 741, 763
ScrFI CCNGG 2 cut(s) 77, 511
SduI GDGCHC 1 cut(s) 1006
SfaNI GCATC 1 cut(s) 898
SfcI CTRYAG 1 cut(s) 846
SinI GGWCC 3 cut(s) 632, 741, 763
SnaBI TACGTA 1 cut(s) 317
Sse9I AATT 8 cut(s) 61, 292, 412, 447, 471, 939, 982, 1024
SsiI CCGC 1 cut(s) 707
SspMI CTAG 4 cut(s) 197, 497, 636, 993
StyD4I CCNGG 2 cut(s) 75, 509
StyI CCWWGG 4 cut(s) 233, 297, 799, 882
TaaI ACNGT 2 cut(s) 540, 772
TaiI ACGT 3 cut(s) 288, 319, 645
TaqI TCGA 2 cut(s) 488, 712
TasI AATT 8 cut(s) 61, 292, 412, 447, 471, 939, 982, 1024
TatI WGTACW 1 cut(s) 617
Tru1I TTAA 3 cut(s) 116, 327, 897
Tru9I TTAA 3 cut(s) 116, 327, 897
TscAI CASTG 2 cut(s) 176, 862
TseFI GTSAC 1 cut(s) 109
TseI GCWGC 5 cut(s) 245, 611, 845, 848, 887
Tsp45I GTSAC 1 cut(s) 109
TspDTI ATGAA 2 cut(s) 153, 995
TspRI CASTG 2 cut(s) 176, 862
Van91I CCANNNNNTGG 1 cut(s) 629
VpaK11BI GGWCC 3 cut(s) 632, 741, 763
XagI CCTNNNNNAGG 1 cut(s) 219
XapI RAATTY 4 cut(s) 292, 471, 982, 1024
XceI RCATGY 1 cut(s) 88
XspI CTAG 4 cut(s) 197, 497, 636, 993
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.