Rh7BG063300
MYB Family

Transcription factor ASG4-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7B
OG0017666
Physical Location & Seq
Forward (+)
4223274 .. 4223621
348 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7BG063300.1

Sequence Viewer

Length: 348 bp
ATGGCTAAGATGGAAGGGGTTGTGCAGACTGATTTGTCAAAAGCAACCAACTTCCTCCATCATTGTCGCATTGGGCTGGATGCAATGTACGACCATCCCGTGCGTTGTGTTACCTTAAATCTTCAAACCATCTCTAATGAGCTGGTCTCGCTTTACATTCCTCTCTTTCAGTGTCAGTGGCAACATTTGAAATGGCTAGTGGAAGCATTCGCCCCTCCTTCAGGCATTCCTCCTTGGACATATGCTGCAAGAGCTTATACCTCTGCATGGATCCACCATCTATATGTTTCAACTTCCAAGGCAGCTCAGAAATACTATGACTGCATAATTATAGTGTTACTCTCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-binding S10_plectin

Protein Analysis

115

Amino Acids

13.15

Weight (kDa)

7.73

Isoelectric Point (pI)

25.9

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 34
AclWI GGATC 2 cut(s) 265, 278
AcuI CTGAAG 1 cut(s) 204
AfaI GTAC 1 cut(s) 89
AfiI CCNNNNNNNGG 2 cut(s) 221, 267
AgsI TTSAA 3 cut(s) 125, 190, 291
AluBI AGCT 3 cut(s) 142, 254, 305
AluI AGCT 3 cut(s) 142, 254, 305
Alw26I GTCTC 1 cut(s) 151
AlwI GGATC 2 cut(s) 265, 278
ApeKI GCWGC 2 cut(s) 245, 302
BamHI GGATCC 1 cut(s) 270
BbvI GCAGC 2 cut(s) 232, 314
BccI CCATC 5 cut(s) 4, 66, 102, 137, 285
BcoDI GTCTC 1 cut(s) 151
BfaI CTAG 1 cut(s) 197
BisI GCNGC 2 cut(s) 246, 303
BlsI GCNGC 2 cut(s) 247, 304
BmiI GGNNCC 1 cut(s) 272
BmsI GCATC 1 cut(s) 70
BplI GAGNNNNNCTC 2 cut(s) 131, 163
BsaI GGTCTC 1 cut(s) 151
BsaJI CCNNGG 2 cut(s) 233, 297
Bsc4I CCNNNNNNNGG 2 cut(s) 221, 267
Bse3DI GCAATG 1 cut(s) 90
BseDI CCNNGG 2 cut(s) 233, 297
BseGI GGATG 2 cut(s) 85, 94
BseLI CCNNNNNNNGG 2 cut(s) 221, 267
BseMI GCAATG 1 cut(s) 90
BseMII CTCAG 1 cut(s) 320
BseXI GCAGC 2 cut(s) 232, 314
BsgI GTGCAG 1 cut(s) 44
BslI CCNNNNNNNGG 2 cut(s) 221, 267
BsmAI GTCTC 1 cut(s) 151
BsmI GAATGC 2 cut(s) 206, 225
Bso31I GGTCTC 1 cut(s) 151
Bsp143I GATC 1 cut(s) 270
BspCNI CTCAG 1 cut(s) 319
BspHI TCATGA 1 cut(s) 344
BspLI GGNNCC 1 cut(s) 272
BspPI GGATC 2 cut(s) 265, 278
BspTNI GGTCTC 1 cut(s) 151
BsrDI GCAATG 1 cut(s) 90
BssECI CCNNGG 2 cut(s) 233, 297
BssMI GATC 1 cut(s) 270
BssT1I CCWWGG 2 cut(s) 233, 297
BstDEI CTNAG 2 cut(s) 6, 306
BstENI CCTNNNNNAGG 1 cut(s) 219
BstF5I GGATG 2 cut(s) 85, 94
BstKTI GATC 1 cut(s) 273
BstMAI GTCTC 1 cut(s) 151
BstMBI GATC 1 cut(s) 270
BstMWI GCNNNNNNNGC 2 cut(s) 148, 251
BstV1I GCAGC 2 cut(s) 232, 314
BstX2I RGATCY 1 cut(s) 270
BstYI RGATCY 1 cut(s) 270
BtsCI GGATG 2 cut(s) 85, 94
BtsIMutI CAGTG 2 cut(s) 176, 182
CciI TCATGA 1 cut(s) 344
Csp6I GTAC 1 cut(s) 88
CviAII CATG 2 cut(s) 267, 345
CviJI RGCY 6 cut(s) 5, 76, 142, 196, 254, 305
CviKI_1 RGCY 6 cut(s) 5, 76, 142, 196, 254, 305
CviQI GTAC 1 cut(s) 88
DdeI CTNAG 2 cut(s) 6, 306
DpnI GATC 1 cut(s) 272
DpnII GATC 1 cut(s) 270
DrdI GACNNNNNNGTC 1 cut(s) 34
DseDI GACNNNNNNGTC 1 cut(s) 34
Eco130I CCWWGG 2 cut(s) 233, 297
Eco31I GGTCTC 1 cut(s) 151
Eco57I CTGAAG 1 cut(s) 204
EcoNI CCTNNNNNAGG 1 cut(s) 219
EcoT14I CCWWGG 2 cut(s) 233, 297
ErhI CCWWGG 2 cut(s) 233, 297
FaeI CATG 2 cut(s) 270, 348
FatI CATG 2 cut(s) 266, 344
FauNDI CATATG 1 cut(s) 241
Fnu4HI GCNGC 2 cut(s) 246, 303
FokI GGATG 2 cut(s) 81, 92
Fsp4HI GCNGC 2 cut(s) 246, 303
FspBI CTAG 1 cut(s) 197
GluI GCNGC 2 cut(s) 246, 303
Hin1II CATG 2 cut(s) 270, 348
Hpy188I TCNGA 1 cut(s) 309
Hpy188III TCNNGA 1 cut(s) 345
HpyAV CCTTC 2 cut(s) 8, 228
HpyCH4V TGCA 5 cut(s) 25, 83, 248, 266, 324
HpyF10VI GCNNNNNNNGC 2 cut(s) 148, 251
HpyF3I CTNAG 2 cut(s) 6, 306
Hsp92II CATG 2 cut(s) 270, 348
Kzo9I GATC 1 cut(s) 270
LpnPI CCDG 3 cut(s) 62, 128, 207
Lsp1109I GCAGC 2 cut(s) 232, 314
LweI GCATC 1 cut(s) 70
MaeI CTAG 1 cut(s) 197
MaeIII GTNAC 2 cut(s) 109, 336
MalI GATC 1 cut(s) 272
MboI GATC 1 cut(s) 270
MboII GAAGA 1 cut(s) 113
MflI RGATCY 1 cut(s) 270
MluCI AATT 1 cut(s) 327
MnlI CCTC 5 cut(s) 65, 171, 225, 240, 271
MseI TTAA 1 cut(s) 116
MslI CAYNNNNRTG 1 cut(s) 282
Mva1269I GAATGC 2 cut(s) 206, 225
MwoI GCNNNNNNNGC 2 cut(s) 148, 251
NdeI CATATG 1 cut(s) 241
NdeII GATC 1 cut(s) 270
NlaIII CATG 2 cut(s) 270, 348
NlaIV GGNNCC 1 cut(s) 272
PagI TCATGA 1 cut(s) 344
PcsI WCGNNNNNNNCGW 1 cut(s) 96
PctI GAATGC 2 cut(s) 206, 225
PkrI GCNGC 2 cut(s) 247, 304
PspN4I GGNNCC 1 cut(s) 272
PsuI RGATCY 1 cut(s) 270
RsaI GTAC 1 cut(s) 89
RsaNI GTAC 1 cut(s) 88
RseI CAYNNNNRTG 1 cut(s) 282
SaqAI TTAA 1 cut(s) 116
SatI GCNGC 2 cut(s) 246, 303
Sau3AI GATC 1 cut(s) 270
SetI ASST 5 cut(s) 116, 144, 256, 263, 307
SfaNI GCATC 1 cut(s) 70
SmiMI CAYNNNNRTG 1 cut(s) 282
Sse9I AATT 1 cut(s) 327
SspMI CTAG 1 cut(s) 197
StyI CCWWGG 2 cut(s) 233, 297
TasI AATT 1 cut(s) 327
Tru1I TTAA 1 cut(s) 116
Tru9I TTAA 1 cut(s) 116
TscAI CASTG 2 cut(s) 176, 182
TseI GCWGC 2 cut(s) 245, 302
TspRI CASTG 2 cut(s) 176, 182
XagI CCTNNNNNAGG 1 cut(s) 219
XspI CTAG 1 cut(s) 197
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.