Rh7BG063400

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7B
OG0017666
Physical Location & Seq
Forward (+)
4224402 .. 4225130
729 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7BG063400.1

Sequence Viewer

Length: 318 bp
ATGAGGTCAGGACCATTGAACGTACAAAGAGAAATGGTTCAAACAATTGTCGAGGAAACTTTCCAAGGCCATTCTCCGACCAAAAGGAAGAAGACTTCCACCAGCTCCATGACTGGCACTTCAAATGCTGCAGCAGACACTGGAAGCAAGCCATCTGAGGAGGCCATAGCCACTGATTTCAAGCAACAAGATGCCCTACAGCTGATGCCTAAGCAGTTCAGAATAATTGATTGGACTTGCTACATCCGTGTTATCGTGGAGATGAATTCCCGTACTAGGTCGCGTGCTCTTTGCTTCGTTGTGCAAAATTCGGATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

105

Amino Acids

11.82

Weight (kDa)

9.14

Isoelectric Point (pI)

45.29

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 283
AcsI RAATTY 2 cut(s) 265, 307
AfaI GTAC 2 cut(s) 24, 274
AfiI CCNNNNNNNGG 1 cut(s) 276
AgsI TTSAA 4 cut(s) 19, 41, 123, 181
AjuI GAANNNNNNNTTGG 2 cut(s) 214, 246
AluBI AGCT 2 cut(s) 105, 202
AluI AGCT 2 cut(s) 105, 202
Alw21I GWGCWC 1 cut(s) 289
AlwNI CAGNNNCTG 1 cut(s) 140
AoxI GGCC 2 cut(s) 67, 162
ApeKI GCWGC 2 cut(s) 128, 131
ApoI RAATTY 2 cut(s) 265, 307
Asp700I GAANNNNTTC 1 cut(s) 36
AspS9I GGNCC 1 cut(s) 11
AvaII GGWCC 1 cut(s) 11
BbsI GAAGAC 1 cut(s) 98
Bbv12I GWGCWC 1 cut(s) 289
BbvI GCAGC 2 cut(s) 115, 143
BccI CCATC 1 cut(s) 160
BfaI CTAG 1 cut(s) 276
BfmI CTRYAG 2 cut(s) 129, 197
BisI GCNGC 2 cut(s) 129, 132
BlsI GCNGC 2 cut(s) 130, 133
Bme18I GGWCC 1 cut(s) 11
BmgT120I GGNCC 1 cut(s) 11
BmsI GCATC 2 cut(s) 181, 195
BpiI GAAGAC 1 cut(s) 98
Bpu10I CCTNAGC 1 cut(s) 210
BsaJI CCNNGG 1 cut(s) 64
Bsc4I CCNNNNNNNGG 1 cut(s) 276
Bse1I ACTGG 2 cut(s) 118, 145
BseDI CCNNGG 1 cut(s) 64
BseGI GGATG 1 cut(s) 243
BseLI CCNNNNNNNGG 1 cut(s) 276
BseMII CTCAG 1 cut(s) 147
BseNI ACTGG 2 cut(s) 118, 145
BseRI GAGGAG 1 cut(s) 173
BseXI GCAGC 2 cut(s) 115, 143
Bsh1236I CGCG 1 cut(s) 283
BshFI GGCC 2 cut(s) 69, 164
BsiHKAI GWGCWC 1 cut(s) 289
BslI CCNNNNNNNGG 1 cut(s) 276
BsnI GGCC 2 cut(s) 69, 164
Bsp1286I GDGCHC 1 cut(s) 289
BspANI GGCC 2 cut(s) 69, 164
BspCNI CTCAG 1 cut(s) 148
BspFNI CGCG 1 cut(s) 283
BspMAI CTGCAG 1 cut(s) 133
BsrI ACTGG 2 cut(s) 118, 145
BssECI CCNNGG 1 cut(s) 64
BssT1I CCWWGG 1 cut(s) 64
BstC8I GCNNGC 2 cut(s) 149, 285
BstDEI CTNAG 2 cut(s) 156, 210
BstF5I GGATG 1 cut(s) 243
BstFNI CGCG 1 cut(s) 283
BstSFI CTRYAG 2 cut(s) 129, 197
BstUI CGCG 1 cut(s) 283
BstV1I GCAGC 2 cut(s) 115, 143
BstV2I GAAGAC 1 cut(s) 98
BsuRI GGCC 2 cut(s) 69, 164
BtsCI GGATG 1 cut(s) 243
BtsIMutI CAGTG 2 cut(s) 138, 171
Cac8I GCNNGC 2 cut(s) 149, 285
CaiI CAGNNNCTG 1 cut(s) 140
Cfr13I GGNCC 1 cut(s) 11
Csp6I GTAC 2 cut(s) 23, 273
CviAII CATG 1 cut(s) 109
CviJI RGCY 6 cut(s) 69, 105, 151, 164, 170, 202
CviKI_1 RGCY 6 cut(s) 69, 105, 151, 164, 170, 202
CviQI GTAC 2 cut(s) 23, 273
DdeI CTNAG 2 cut(s) 156, 210
Eco130I CCWWGG 1 cut(s) 64
Eco47I GGWCC 1 cut(s) 11
EcoRI GAATTC 1 cut(s) 265
EcoT14I CCWWGG 1 cut(s) 64
ErhI CCWWGG 1 cut(s) 64
FaeI CATG 1 cut(s) 112
FaiI YATR 2 cut(s) 110, 167
FatI CATG 1 cut(s) 108
Fnu4HI GCNGC 2 cut(s) 129, 132
FokI GGATG 1 cut(s) 230
Fsp4HI GCNGC 2 cut(s) 129, 132
FspBI CTAG 1 cut(s) 276
GluI GCNGC 2 cut(s) 129, 132
HaeIII GGCC 2 cut(s) 69, 164
Hin1II CATG 1 cut(s) 112
Hpy188I TCNGA 4 cut(s) 78, 157, 221, 313
Hpy188III TCNNGA 1 cut(s) 9
HpyCH4IV ACGT 1 cut(s) 21
HpyCH4V TGCA 2 cut(s) 131, 304
HpyF3I CTNAG 2 cut(s) 156, 210
HpySE526I ACGT 1 cut(s) 21
Hsp92II CATG 1 cut(s) 112
LmnI GCTCC 1 cut(s) 110
LpnPI CCDG 3 cut(s) 99, 115, 126
Lsp1109I GCAGC 2 cut(s) 115, 143
LweI GCATC 2 cut(s) 181, 195
MaeI CTAG 1 cut(s) 276
MaeII ACGT 1 cut(s) 21
MboII GAAGA 2 cut(s) 100, 103
MfeI CAATTG 1 cut(s) 45
MhlI GDGCHC 1 cut(s) 289
MluCI AATT 4 cut(s) 45, 225, 265, 307
MmeI TCCRAC 1 cut(s) 101
MnlI CCTC 3 cut(s) 46, 151, 154
MroXI GAANNNNTTC 1 cut(s) 36
MspA1I CMGCKG 1 cut(s) 202
MunI CAATTG 1 cut(s) 45
MvnI CGCG 1 cut(s) 283
NlaIII CATG 1 cut(s) 112
PdmI GAANNNNTTC 1 cut(s) 36
PkrI GCNGC 2 cut(s) 130, 133
PspPI GGNCC 1 cut(s) 11
PstI CTGCAG 1 cut(s) 133
PstNI CAGNNNCTG 1 cut(s) 140
PvuII CAGCTG 1 cut(s) 202
RsaI GTAC 2 cut(s) 24, 274
RsaNI GTAC 2 cut(s) 23, 273
SatI GCNGC 2 cut(s) 129, 132
Sau96I GGNCC 1 cut(s) 11
SduI GDGCHC 1 cut(s) 289
SetI ASST 5 cut(s) 8, 24, 107, 204, 281
SfaNI GCATC 2 cut(s) 181, 195
SfcI CTRYAG 2 cut(s) 129, 197
SinI GGWCC 1 cut(s) 11
Sse9I AATT 4 cut(s) 45, 225, 265, 307
SspMI CTAG 1 cut(s) 276
StyI CCWWGG 1 cut(s) 64
TaiI ACGT 1 cut(s) 24
TaqI TCGA 1 cut(s) 51
TasI AATT 4 cut(s) 45, 225, 265, 307
TscAI CASTG 2 cut(s) 145, 178
TseI GCWGC 2 cut(s) 128, 131
TspDTI ATGAA 1 cut(s) 278
TspGWI ACGGA 1 cut(s) 236
TspRI CASTG 2 cut(s) 145, 178
VpaK11BI GGWCC 1 cut(s) 11
XapI RAATTY 2 cut(s) 265, 307
XmnI GAANNNNTTC 1 cut(s) 36
XspI CTAG 1 cut(s) 276
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.