FvH4_5g13100
MYB Family

Transcription factor ASG4-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb5
OG0017666
Physical Location & Seq
Reverse (-)
7387683 .. 7388825
1143 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_5g13100.t1

Sequence Viewer

Length: 1143 bp
ATGACTATGTTGGAGATTAAATTGGGGACTGCAATGTCAAAGGCAACCAAGTATCTAGAAGAAATTCACCATGTTTCCATGGTGCACGAGTCTTCTGATATGCGCTGTGTTAGCTTAAATCTCCAGACTATCTTTGATGAACTGGCTTTACTCTACAGTCTTCTATTCAATTGCCAGGAGAAGCGCATTGAATGTCTAATGGAGGAGTTTCCCCCTCCATCGGGTGTTTCTCCAGGAGATCATGGCGCAAGAGCCTACATCTCTGCATGGATTCATGATCTATATGTTTCAAACTGCAAGGCTGTCAGGACACTCTCTGGCTTTCGTTATTTAAAACATTACTTGCATGAAGAAGATTACTACTCATTACGATATGATACATTTCTCATTCATCTGAATGCAGCTATTCGCCCAACTCACATTAGGGGCATAGCAAAAGATACCATTTATATTCCTATACTCCACGACAGTCCAGCTTGGGATACTGATAATCCATTTAACATTGAGAACTTTGTCCTGAACCGTGATCTGCTTTCAGGATTACTTGCGAGTGTTAAAGGATGGAGAATGTCAATCATTGTGTCACACAACCGAGGACGCCCCACCTGGCTGTTTGACTGGCACGATGACAAATGTTGTGCTTGGTTTCCTCTAGGAAACTATACAATGGAGGATGTTACTGTTGCCTATATTGTCGGAGCAGCCTGTACTCCAAATCTTGCACCCAGAGATGTTGATGACTGGCAGAACGGAACTGTGACTGGAAACTACAGCATGGACTATGAACGTGTTGAACCTCGACGCTTTTATGGTGATTATGAGGTCAGGATCCTTGAACAAAGACAAGTTCTCCCTACATTCCCAACCATTGTTGAGGAAACAAATCAAGGCCCTCTCACCAAAAGGCAGAAGACTCTGATCACTGTATCAACTACAGCCACTTCAATGTCTTTGACAGATTCAGGAAGCGGGCCATCCGAATCCACAGCCAGTGCCATAAAGCAACAAGATGCCGAACAGCTGATAGTTTGCCAGTTCAAAATTATAGATTGGACCTGTTACCACAATGTTGTGCGTAAGAGGGATTATGAAACAAGGAACCTTGCTCACTGTTCGATTATGAAATTGGATTTTATTTTATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-binding S10_plectin

Protein Analysis

381

Amino Acids

43.63

Weight (kDa)

5.78

Isoelectric Point (pI)

45.28

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 34
AciI CCGC 1 cut(s) 969
AclWI GGATC 2 cut(s) 823, 836
AcsI RAATTY 1 cut(s) 63
AcyI GRCGYC 1 cut(s) 598
AfaI GTAC 1 cut(s) 709
AfiI CCNNNNNNNGG 2 cut(s) 220, 221
AflIII ACRYGT 1 cut(s) 787
AgsI TTSAA 7 cut(s) 169, 191, 291, 794, 836, 945, 1039
AjnI CCWGG 3 cut(s) 174, 232, 605
AluBI AGCT 4 cut(s) 114, 404, 476, 1021
AluI AGCT 4 cut(s) 114, 404, 476, 1021
Alw21I GWGCWC 1 cut(s) 87
Alw44I GTGCAC 1 cut(s) 83
AlwI GGATC 2 cut(s) 823, 836
AoxI GGCC 2 cut(s) 889, 971
ApaLI GTGCAC 1 cut(s) 83
ApeKI GCWGC 2 cut(s) 401, 701
ApoI RAATTY 1 cut(s) 63
Asp700I GAANNNNTTC 1 cut(s) 63
AspLEI GCGC 3 cut(s) 105, 186, 248
AspS9I GGNCC 3 cut(s) 890, 971, 1053
AsuHPI GGTGA 3 cut(s) 59, 824, 889
AvaII GGWCC 1 cut(s) 1053
BaeGI GKGCMC 1 cut(s) 87
BamHI GGATCC 1 cut(s) 828
BauI CACGAG 1 cut(s) 86
BbsI GAAGAC 3 cut(s) 84, 152, 917
Bbv12I GWGCWC 1 cut(s) 87
BbvI GCAGC 2 cut(s) 413, 713
BccI CCATC 3 cut(s) 226, 555, 982
BciT130I CCWGG 3 cut(s) 176, 234, 607
BciVI GTATCC 1 cut(s) 475
BclI TGATCA 1 cut(s) 918
BfaI CTAG 2 cut(s) 56, 653
BfmI CTRYAG 3 cut(s) 154, 769, 933
BfuI GTATCC 1 cut(s) 475
BisI GCNGC 2 cut(s) 402, 702
BlsI GCNGC 2 cut(s) 403, 703
Bme1390I CCNGG 3 cut(s) 176, 234, 607
Bme18I GGWCC 1 cut(s) 1053
BmgT120I GGNCC 3 cut(s) 890, 971, 1053
BmiI GGNNCC 2 cut(s) 830, 1100
BmrFI CCNGG 3 cut(s) 176, 234, 607
BmsI GCATC 1 cut(s) 1000
BpiI GAAGAC 3 cut(s) 84, 152, 917
BpmI CTGGAG 2 cut(s) 107, 216
BsaHI GRCGYC 1 cut(s) 598
BsaJI CCNNGG 2 cut(s) 78, 592
BsaXI ACNNNNNCTCC 2 cut(s) 834, 864
Bsc4I CCNNNNNNNGG 2 cut(s) 220, 221
Bse1I ACTGG 6 cut(s) 147, 623, 746, 766, 990, 1033
Bse3DI GCAATG 1 cut(s) 39
BseBI CCWGG 3 cut(s) 176, 234, 607
BseDI CCNNGG 2 cut(s) 78, 592
BseGI GGATG 3 cut(s) 566, 679, 974
BseLI CCNNNNNNNGG 2 cut(s) 220, 221
BseMI GCAATG 1 cut(s) 39
BseNI ACTGG 6 cut(s) 147, 623, 746, 766, 990, 1033
BseRI GAGGAG 1 cut(s) 218
BseSI GKGCMC 1 cut(s) 87
BseXI GCAGC 2 cut(s) 413, 713
BshFI GGCC 2 cut(s) 891, 973
BsiHKAI GWGCWC 1 cut(s) 87
BslFI GGGAC 1 cut(s) 40
BslI CCNNNNNNNGG 2 cut(s) 220, 221
BsmFI GGGAC 1 cut(s) 40
BsmI GAATGC 1 cut(s) 403
BsnI GGCC 2 cut(s) 891, 973
Bsp1286I GDGCHC 1 cut(s) 87
Bsp143I GATC 5 cut(s) 238, 277, 526, 828, 918
Bsp19I CCATGG 1 cut(s) 78
BspACI CCGC 1 cut(s) 969
BspANI GGCC 2 cut(s) 891, 973
BspHI TCATGA 1 cut(s) 274
BspLI GGNNCC 2 cut(s) 830, 1100
BspPI GGATC 2 cut(s) 823, 836
BsrDI GCAATG 1 cut(s) 39
BsrI ACTGG 6 cut(s) 147, 623, 746, 766, 990, 1033
BssECI CCNNGG 2 cut(s) 78, 592
BssMI GATC 5 cut(s) 238, 277, 526, 828, 918
BssNI GRCGYC 1 cut(s) 598
BssSI CACGAG 1 cut(s) 86
BssT1I CCWWGG 1 cut(s) 78
Bst2BI CACGAG 1 cut(s) 86
Bst2UI CCWGG 3 cut(s) 176, 234, 607
Bst4CI ACNGT 7 cut(s) 158, 470, 524, 682, 757, 925, 1112
BstACI GRCGYC 1 cut(s) 598
BstC8I GCNNGC 1 cut(s) 971
BstDSI CCRYGG 1 cut(s) 78
BstF5I GGATG 3 cut(s) 566, 679, 974
BstHHI GCGC 3 cut(s) 105, 186, 248
BstKTI GATC 5 cut(s) 241, 280, 529, 831, 921
BstMBI GATC 5 cut(s) 238, 277, 526, 828, 918
BstMWI GCNNNNNNNGC 1 cut(s) 111
BstNI CCWGG 3 cut(s) 176, 234, 607
BstSCI CCNGG 3 cut(s) 174, 232, 605
BstSFI CTRYAG 3 cut(s) 154, 769, 933
BstSLI GKGCMC 1 cut(s) 87
BstV1I GCAGC 2 cut(s) 413, 713
BstV2I GAAGAC 3 cut(s) 84, 152, 917
BstX2I RGATCY 1 cut(s) 828
BstYI RGATCY 1 cut(s) 828
BsuI GTATCC 1 cut(s) 475
BsuRI GGCC 2 cut(s) 891, 973
BtgI CCRYGG 1 cut(s) 78
BtsCI GGATG 3 cut(s) 566, 679, 974
BtsIMutI CAGTG 3 cut(s) 921, 997, 1108
Cac8I GCNNGC 1 cut(s) 971
CciI TCATGA 1 cut(s) 274
CfoI GCGC 3 cut(s) 105, 186, 248
Cfr13I GGNCC 3 cut(s) 890, 971, 1053
CseI GACGC 2 cut(s) 606, 810
Csp6I GTAC 1 cut(s) 708
CviAII CATG 7 cut(s) 71, 79, 242, 267, 275, 347, 775
CviQI GTAC 1 cut(s) 708
DpnI GATC 5 cut(s) 240, 279, 528, 830, 920
DpnII GATC 5 cut(s) 238, 277, 526, 828, 918
DraI TTTAAA 1 cut(s) 333
DrdI GACNNNNNNGTC 1 cut(s) 34
DseDI GACNNNNNNGTC 1 cut(s) 34
Eco130I CCWWGG 1 cut(s) 78
Eco47I GGWCC 1 cut(s) 1053
EcoO109I RGGNCCY 1 cut(s) 890
EcoRII CCWGG 3 cut(s) 174, 232, 605
EcoT14I CCWWGG 1 cut(s) 78
ErhI CCWWGG 1 cut(s) 78
FaeI CATG 7 cut(s) 74, 82, 245, 270, 278, 350, 778
FaqI GGGAC 1 cut(s) 40
FatI CATG 7 cut(s) 70, 78, 241, 266, 274, 346, 774
FauI CCCGC 1 cut(s) 962
FbaI TGATCA 1 cut(s) 918
Fnu4HI GCNGC 2 cut(s) 402, 702
FokI GGATG 3 cut(s) 573, 686, 961
Fsp4HI GCNGC 2 cut(s) 402, 702
FspBI CTAG 2 cut(s) 56, 653
GlaI GCGC 3 cut(s) 104, 185, 247
GluI GCNGC 2 cut(s) 402, 702
GsuI CTGGAG 2 cut(s) 107, 216
HaeIII GGCC 2 cut(s) 891, 973
HgaI GACGC 2 cut(s) 606, 810
HhaI GCGC 3 cut(s) 105, 186, 248
Hin1I GRCGYC 1 cut(s) 598
Hin1II CATG 7 cut(s) 74, 82, 245, 270, 278, 350, 778
Hin6I GCGC 3 cut(s) 103, 184, 246
HinP1I GCGC 3 cut(s) 103, 184, 246
HinfI GANTC 5 cut(s) 89, 271, 913, 959, 980
HphI GGTGA 3 cut(s) 59, 824, 889
Hpy166II GTNNAC 1 cut(s) 85
Hpy188I TCNGA 5 cut(s) 97, 396, 698, 918, 979
Hpy188III TCNNGA 8 cut(s) 56, 124, 275, 307, 517, 537, 826, 963
Hpy8I GTNNAC 1 cut(s) 85
Hpy99I CGWCG 1 cut(s) 804
HpyCH4III ACNGT 7 cut(s) 158, 470, 524, 682, 757, 925, 1112
HpyCH4IV ACGT 1 cut(s) 787
HpyCH4V TGCA 7 cut(s) 32, 85, 266, 297, 346, 401, 722
HpyF10VI GCNNNNNNNGC 1 cut(s) 111
HpySE526I ACGT 1 cut(s) 787
Hsp92I GRCGYC 1 cut(s) 598
Hsp92II CATG 7 cut(s) 74, 82, 245, 270, 278, 350, 778
HspAI GCGC 3 cut(s) 103, 184, 246
Ksp22I TGATCA 1 cut(s) 918
Kzo9I GATC 5 cut(s) 238, 277, 526, 828, 918
LmnI GCTCC 1 cut(s) 698
Lsp1109I GCAGC 2 cut(s) 413, 713
LweI GCATC 1 cut(s) 1000
MaeI CTAG 2 cut(s) 56, 653
MaeII ACGT 1 cut(s) 787
MaeIII GTNAC 4 cut(s) 582, 676, 757, 1058
MalI GATC 5 cut(s) 240, 279, 528, 830, 920
MboI GATC 5 cut(s) 238, 277, 526, 828, 918
MboII GAAGA 6 cut(s) 71, 84, 152, 362, 365, 922
MfeI CAATTG 1 cut(s) 169
MflI RGATCY 1 cut(s) 828
MhlI GDGCHC 1 cut(s) 87
MluCI AATT 5 cut(s) 20, 63, 169, 1041, 1124
MlyI GAGTC 2 cut(s) 98, 907
MmeI TCCRAC 1 cut(s) 676
MroXI GAANNNNTTC 1 cut(s) 63
MseI TTAA 5 cut(s) 18, 116, 332, 498, 555
MslI CAYNNNNRTG 2 cut(s) 396, 944
MspA1I CMGCKG 1 cut(s) 1021
MspR9I CCNGG 3 cut(s) 176, 234, 607
MunI CAATTG 1 cut(s) 169
Mva1269I GAATGC 1 cut(s) 403
MvaI CCWGG 3 cut(s) 176, 234, 607
MwoI GCNNNNNNNGC 1 cut(s) 111
NcoI CCATGG 1 cut(s) 78
NdeII GATC 5 cut(s) 238, 277, 526, 828, 918
NlaIII CATG 7 cut(s) 74, 82, 245, 270, 278, 350, 778
NlaIV GGNNCC 2 cut(s) 830, 1100
NmuCI GTSAC 2 cut(s) 582, 757
PagI TCATGA 1 cut(s) 274
PctI GAATGC 1 cut(s) 403
PdmI GAANNNNTTC 1 cut(s) 63
PfeI GAWTC 3 cut(s) 271, 959, 980
PfoI TCCNGGA 1 cut(s) 232
PkrI GCNGC 2 cut(s) 403, 703
PleI GAGTC 2 cut(s) 97, 907
PpsI GAGTC 2 cut(s) 97, 907
Psp6I CCWGG 3 cut(s) 174, 232, 605
PspGI CCWGG 3 cut(s) 174, 232, 605
PspN4I GGNNCC 2 cut(s) 830, 1100
PspPI GGNCC 3 cut(s) 890, 971, 1053
PsrI GAACNNNNNNTAC 2 cut(s) 132, 164
PsuI RGATCY 1 cut(s) 828
PvuII CAGCTG 1 cut(s) 1021
RsaI GTAC 1 cut(s) 709
RsaNI GTAC 1 cut(s) 708
RseI CAYNNNNRTG 2 cut(s) 396, 944
SaqAI TTAA 5 cut(s) 18, 116, 332, 498, 555
SatI GCNGC 2 cut(s) 402, 702
Sau3AI GATC 5 cut(s) 238, 277, 526, 828, 918
Sau96I GGNCC 3 cut(s) 890, 971, 1053
SchI GAGTC 2 cut(s) 98, 907
ScrFI CCNGG 3 cut(s) 176, 234, 607
SduI GDGCHC 1 cut(s) 87
SfaNI GCATC 1 cut(s) 1000
SfcI CTRYAG 3 cut(s) 154, 769, 933
SinI GGWCC 1 cut(s) 1053
SmiMI CAYNNNNRTG 2 cut(s) 396, 944
Sse9I AATT 5 cut(s) 20, 63, 169, 1041, 1124
SsiI CCGC 1 cut(s) 969
SspMI CTAG 2 cut(s) 56, 653
StyD4I CCNGG 3 cut(s) 174, 232, 605
StyI CCWWGG 1 cut(s) 78
TaaI ACNGT 7 cut(s) 158, 470, 524, 682, 757, 925, 1112
TaiI ACGT 1 cut(s) 790
TaqI TCGA 2 cut(s) 799, 1115
TasI AATT 5 cut(s) 20, 63, 169, 1041, 1124
TatI WGTACW 1 cut(s) 707
TfiI GAWTC 3 cut(s) 271, 959, 980
Tru1I TTAA 5 cut(s) 18, 116, 332, 498, 555
Tru9I TTAA 5 cut(s) 18, 116, 332, 498, 555
TscAI CASTG 3 cut(s) 928, 997, 1115
TseFI GTSAC 2 cut(s) 582, 757
TseI GCWGC 2 cut(s) 401, 701
Tsp45I GTSAC 2 cut(s) 582, 757
TspDTI ATGAA 7 cut(s) 153, 263, 363, 380, 798, 1104, 1136
TspGWI ACGGA 1 cut(s) 765
TspRI CASTG 3 cut(s) 928, 997, 1115
VneI GTGCAC 1 cut(s) 83
VpaK11BI GGWCC 1 cut(s) 1053
XapI RAATTY 1 cut(s) 63
XbaI TCTAGA 1 cut(s) 55
XmnI GAANNNNTTC 1 cut(s) 63
XspI CTAG 2 cut(s) 56, 653
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.