Rh7AG063100

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7A
OG0017666
Physical Location & Seq
Forward (+)
4393847 .. 4394149
303 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7AG063100.1

Sequence Viewer

Length: 303 bp
ATGGCTAAGATGGAAGGGGTTGTGCAGACTGATTTGTCAAAAGCAACCAACTTCCTCCATCATTGTCGCATTGGGCTGGATGCAATGTACGACCATCCCGTGCGTTGTGTTACCTTAAATCTTCAAACCATCTCTAATGAGCTGGTCTCGCTTTACATTCCTCTCTTTCAGTGTCAGTGGCAACATTTGAAATGGCTAGTGGAAGCATTCGCCCCTCCTTCAGGCATTCCTCCTTGGACATATCTCTGCATGGATCCACCATCTATATGTTTCAACCTCCAAGGCAGCTCAGAAATACTATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

100

Amino Acids

11.36

Weight (kDa)

5.66

Isoelectric Point (pI)

40.86

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 34
AclWI GGATC 2 cut(s) 248, 261
AcuI CTGAAG 1 cut(s) 204
AfaI GTAC 1 cut(s) 89
AfiI CCNNNNNNNGG 1 cut(s) 221
AgsI TTSAA 3 cut(s) 125, 190, 274
AluBI AGCT 2 cut(s) 142, 288
AluI AGCT 2 cut(s) 142, 288
Alw26I GTCTC 1 cut(s) 151
AlwI GGATC 2 cut(s) 248, 261
ApeKI GCWGC 1 cut(s) 285
BamHI GGATCC 1 cut(s) 253
BbvI GCAGC 1 cut(s) 297
BccI CCATC 5 cut(s) 4, 66, 102, 137, 268
BcoDI GTCTC 1 cut(s) 151
BfaI CTAG 1 cut(s) 197
BisI GCNGC 1 cut(s) 286
BlsI GCNGC 1 cut(s) 287
BmiI GGNNCC 1 cut(s) 255
BmsI GCATC 1 cut(s) 70
BplI GAGNNNNNCTC 2 cut(s) 131, 163
BsaI GGTCTC 1 cut(s) 151
BsaJI CCNNGG 2 cut(s) 233, 280
Bsc4I CCNNNNNNNGG 1 cut(s) 221
Bse3DI GCAATG 1 cut(s) 90
BseDI CCNNGG 2 cut(s) 233, 280
BseGI GGATG 2 cut(s) 85, 94
BseLI CCNNNNNNNGG 1 cut(s) 221
BseMI GCAATG 1 cut(s) 90
BseMII CTCAG 1 cut(s) 303
BseXI GCAGC 1 cut(s) 297
BsgI GTGCAG 1 cut(s) 44
BslI CCNNNNNNNGG 1 cut(s) 221
BsmAI GTCTC 1 cut(s) 151
BsmI GAATGC 2 cut(s) 206, 225
Bso31I GGTCTC 1 cut(s) 151
Bsp143I GATC 1 cut(s) 253
BspCNI CTCAG 1 cut(s) 302
BspLI GGNNCC 1 cut(s) 255
BspPI GGATC 2 cut(s) 248, 261
BspTNI GGTCTC 1 cut(s) 151
BsrDI GCAATG 1 cut(s) 90
BssECI CCNNGG 2 cut(s) 233, 280
BssMI GATC 1 cut(s) 253
BssT1I CCWWGG 2 cut(s) 233, 280
BstDEI CTNAG 2 cut(s) 6, 289
BstENI CCTNNNNNAGG 1 cut(s) 219
BstF5I GGATG 2 cut(s) 85, 94
BstKTI GATC 1 cut(s) 256
BstMAI GTCTC 1 cut(s) 151
BstMBI GATC 1 cut(s) 253
BstMWI GCNNNNNNNGC 1 cut(s) 148
BstV1I GCAGC 1 cut(s) 297
BstX2I RGATCY 1 cut(s) 253
BstYI RGATCY 1 cut(s) 253
BtsCI GGATG 2 cut(s) 85, 94
BtsIMutI CAGTG 2 cut(s) 176, 182
Csp6I GTAC 1 cut(s) 88
CviAII CATG 1 cut(s) 250
CviJI RGCY 5 cut(s) 5, 76, 142, 196, 288
CviKI_1 RGCY 5 cut(s) 5, 76, 142, 196, 288
CviQI GTAC 1 cut(s) 88
DdeI CTNAG 2 cut(s) 6, 289
DpnI GATC 1 cut(s) 255
DpnII GATC 1 cut(s) 253
DrdI GACNNNNNNGTC 1 cut(s) 34
DseDI GACNNNNNNGTC 1 cut(s) 34
Eco130I CCWWGG 2 cut(s) 233, 280
Eco31I GGTCTC 1 cut(s) 151
Eco57I CTGAAG 1 cut(s) 204
EcoNI CCTNNNNNAGG 1 cut(s) 219
EcoT14I CCWWGG 2 cut(s) 233, 280
ErhI CCWWGG 2 cut(s) 233, 280
FaeI CATG 1 cut(s) 253
FaiI YATR 5 cut(s) 241, 251, 266, 268, 301
FatI CATG 1 cut(s) 249
Fnu4HI GCNGC 1 cut(s) 286
FokI GGATG 2 cut(s) 81, 92
Fsp4HI GCNGC 1 cut(s) 286
FspBI CTAG 1 cut(s) 197
GluI GCNGC 1 cut(s) 286
Hin1II CATG 1 cut(s) 253
Hpy188I TCNGA 1 cut(s) 292
HpyAV CCTTC 2 cut(s) 8, 228
HpyCH4V TGCA 3 cut(s) 25, 83, 249
HpyF10VI GCNNNNNNNGC 1 cut(s) 148
HpyF3I CTNAG 2 cut(s) 6, 289
Hsp92II CATG 1 cut(s) 253
Kzo9I GATC 1 cut(s) 253
LpnPI CCDG 3 cut(s) 62, 128, 207
Lsp1109I GCAGC 1 cut(s) 297
LweI GCATC 1 cut(s) 70
MaeI CTAG 1 cut(s) 197
MaeIII GTNAC 1 cut(s) 109
MalI GATC 1 cut(s) 255
MboI GATC 1 cut(s) 253
MboII GAAGA 1 cut(s) 113
MflI RGATCY 1 cut(s) 253
MnlI CCTC 5 cut(s) 65, 171, 225, 240, 287
MseI TTAA 1 cut(s) 116
MslI CAYNNNNRTG 1 cut(s) 265
Mva1269I GAATGC 2 cut(s) 206, 225
MwoI GCNNNNNNNGC 1 cut(s) 148
NdeII GATC 1 cut(s) 253
NlaIII CATG 1 cut(s) 253
NlaIV GGNNCC 1 cut(s) 255
PcsI WCGNNNNNNNCGW 1 cut(s) 96
PctI GAATGC 2 cut(s) 206, 225
PkrI GCNGC 1 cut(s) 287
PspN4I GGNNCC 1 cut(s) 255
PsuI RGATCY 1 cut(s) 253
RsaI GTAC 1 cut(s) 89
RsaNI GTAC 1 cut(s) 88
RseI CAYNNNNRTG 1 cut(s) 265
SaqAI TTAA 1 cut(s) 116
SatI GCNGC 1 cut(s) 286
Sau3AI GATC 1 cut(s) 253
SetI ASST 4 cut(s) 116, 144, 279, 290
SfaNI GCATC 1 cut(s) 70
SmiMI CAYNNNNRTG 1 cut(s) 265
SspMI CTAG 1 cut(s) 197
StyI CCWWGG 2 cut(s) 233, 280
Tru1I TTAA 1 cut(s) 116
Tru9I TTAA 1 cut(s) 116
TscAI CASTG 2 cut(s) 176, 182
TseI GCWGC 1 cut(s) 285
TspRI CASTG 2 cut(s) 176, 182
XagI CCTNNNNNAGG 1 cut(s) 219
XspI CTAG 1 cut(s) 197
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.