Rh7CG064300
MYB Family

Transcription factor ASG4-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7C
OG0017666
Physical Location & Seq
Forward (+)
4655600 .. 4656772
1173 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7CG064300.1

Sequence Viewer

Length: 834 bp
ATGGCTAAGATGGAAGGGGTTGTGCAGACTGATTTGTCAAAAGCAACCGACTTCCTCCATCATTGTCGCATTGGGCTGGATGCAATGTACGACCATCCCGTGCGTTGTGTTACCTTAAATCTTCAAACCATCTCTGATGAGCTGGTCTCGCTTTACATTCCTCTCTTTCAGTGTCAGTGGCAACATTTGAAATGGCTAGTGGAAGCATTCGCCCCTCCTTCAGGCATTCCTCCTTGGACATATGCTGCAAGAGCTTATATCTCTCTATTCGCCCTGCTCACATTAAGGGAGCTATTGGAGACACTATTTATATTCCCATTCTCAATGAATGTCCAGCTTGGAATACTGATAATCGATCCATTCCACATTGAGAACTATATATGTTGTGGACTATCATTTGGTTTCAGGGACTATATAATGGATGATGTTACTATTGCCTACATTGTCGGAACCGCCTGTACTCCACATCTTGGACCTAGAGATGTTGATGAATGGCAGAGCGGAACTGTGCCTGAAAATGAGTCGGGACCATTGAACTTACAAAGAGAAATGGTTAAAACAATTGTTGAGGAAACTTTCCAAGGCCATTCTCCGACTAAAAGGAAGAAGACTTCCACCAGCTCCATGACCGGCACTTCAAATGCTGCAGCAGACACTGGAAGCAAGCCGTCTGAGGAGGCCATAGCCACTGACTTCAAGCAACAAGATGCCCTACAGCTGATGCCTAAGCAGTTCAGAATAATTTATTGGACTTCCTACAGCCGTGTTATCGTGGAGATGAATTCCCGTACTAGGTCGCGTGCTCTTTGCTTCGTTGTGCAAAATTCGGATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-binding S10_plectin

Protein Analysis

277

Amino Acids

31.33

Weight (kDa)

5.51

Isoelectric Point (pI)

39.6

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 34
AccB7I CCANNNNNTGG 1 cut(s) 470
AccBSI CCGCTC 1 cut(s) 501
AccII CGCG 1 cut(s) 799
AciI CCGC 2 cut(s) 453, 501
AclWI GGATC 1 cut(s) 350
AcsI RAATTY 2 cut(s) 781, 823
AcuI CTGAAG 1 cut(s) 204
AfaI GTAC 3 cut(s) 89, 460, 790
AfiI CCNNNNNNNGG 3 cut(s) 221, 470, 792
AgsI TTSAA 5 cut(s) 125, 190, 535, 639, 697
AjuI GAANNNNNNNTTGG 2 cut(s) 730, 762
AluBI AGCT 6 cut(s) 142, 254, 292, 337, 621, 718
AluI AGCT 6 cut(s) 142, 254, 292, 337, 621, 718
Alw21I GWGCWC 1 cut(s) 805
Alw26I GTCTC 2 cut(s) 151, 293
AlwI GGATC 1 cut(s) 350
AlwNI CAGNNNCTG 1 cut(s) 656
AoxI GGCC 2 cut(s) 583, 678
ApeKI GCWGC 3 cut(s) 245, 644, 647
ApoI RAATTY 2 cut(s) 781, 823
AspS9I GGNCC 2 cut(s) 473, 527
AvaII GGWCC 2 cut(s) 473, 527
BbsI GAAGAC 1 cut(s) 614
Bbv12I GWGCWC 1 cut(s) 805
BbvI GCAGC 3 cut(s) 232, 631, 659
BccI CCATC 4 cut(s) 4, 66, 102, 137
BceAI ACGGC 2 cut(s) 652, 747
BcoDI GTCTC 2 cut(s) 151, 293
BfaI CTAG 3 cut(s) 197, 477, 792
BfmI CTRYAG 3 cut(s) 645, 713, 757
BisI GCNGC 3 cut(s) 246, 645, 648
BlsI GCNGC 3 cut(s) 247, 646, 649
Bme18I GGWCC 2 cut(s) 473, 527
BmgT120I GGNCC 2 cut(s) 473, 527
BmiI GGNNCC 2 cut(s) 451, 528
BmsI GCATC 3 cut(s) 70, 697, 711
BpiI GAAGAC 1 cut(s) 614
BplI GAGNNNNNCTC 2 cut(s) 131, 163
Bpu10I CCTNAGC 1 cut(s) 726
Bsa29I ATCGAT 1 cut(s) 354
BsaI GGTCTC 1 cut(s) 151
BsaJI CCNNGG 2 cut(s) 233, 580
Bsc4I CCNNNNNNNGG 3 cut(s) 221, 470, 792
Bse118I RCCGGY 1 cut(s) 629
Bse1I ACTGG 1 cut(s) 661
Bse3DI GCAATG 1 cut(s) 90
BseCI ATCGAT 1 cut(s) 354
BseDI CCNNGG 2 cut(s) 233, 580
BseGI GGATG 3 cut(s) 85, 94, 427
BseLI CCNNNNNNNGG 3 cut(s) 221, 470, 792
BseMI GCAATG 1 cut(s) 90
BseMII CTCAG 1 cut(s) 663
BseNI ACTGG 1 cut(s) 661
BseRI GAGGAG 1 cut(s) 689
BseXI GCAGC 3 cut(s) 232, 631, 659
BsgI GTGCAG 1 cut(s) 44
Bsh1236I CGCG 1 cut(s) 799
BshFI GGCC 2 cut(s) 585, 680
BshVI ATCGAT 1 cut(s) 354
BsiHKAI GWGCWC 1 cut(s) 805
BsiSI CCGG 1 cut(s) 630
BslFI GGGAC 2 cut(s) 422, 540
BslI CCNNNNNNNGG 3 cut(s) 221, 470, 792
BsmAI GTCTC 2 cut(s) 151, 293
BsmFI GGGAC 2 cut(s) 422, 540
BsmI GAATGC 2 cut(s) 206, 225
BsnI GGCC 2 cut(s) 585, 680
Bso31I GGTCTC 1 cut(s) 151
Bsp1286I GDGCHC 1 cut(s) 805
Bsp143I GATC 1 cut(s) 355
BspACI CCGC 2 cut(s) 453, 501
BspANI GGCC 2 cut(s) 585, 680
BspCNI CTCAG 1 cut(s) 664
BspDI ATCGAT 1 cut(s) 354
BspFNI CGCG 1 cut(s) 799
BspLI GGNNCC 2 cut(s) 451, 528
BspMAI CTGCAG 1 cut(s) 649
BspPI GGATC 1 cut(s) 350
BspTNI GGTCTC 1 cut(s) 151
BsrBI CCGCTC 1 cut(s) 501
BsrDI GCAATG 1 cut(s) 90
BsrFI RCCGGY 1 cut(s) 629
BsrI ACTGG 1 cut(s) 661
BssAI RCCGGY 1 cut(s) 629
BssECI CCNNGG 2 cut(s) 233, 580
BssMI GATC 1 cut(s) 355
BssT1I CCWWGG 2 cut(s) 233, 580
Bst4CI ACNGT 1 cut(s) 508
BstC8I GCNNGC 2 cut(s) 665, 801
BstDEI CTNAG 3 cut(s) 6, 672, 726
BstENI CCTNNNNNAGG 1 cut(s) 219
BstF5I GGATG 3 cut(s) 85, 94, 427
BstFNI CGCG 1 cut(s) 799
BstKTI GATC 1 cut(s) 358
BstMAI GTCTC 2 cut(s) 151, 293
BstMBI GATC 1 cut(s) 355
BstMWI GCNNNNNNNGC 2 cut(s) 148, 251
BstSFI CTRYAG 3 cut(s) 645, 713, 757
BstUI CGCG 1 cut(s) 799
BstV1I GCAGC 3 cut(s) 232, 631, 659
BstV2I GAAGAC 1 cut(s) 614
Bsu15I ATCGAT 1 cut(s) 354
BsuRI GGCC 2 cut(s) 585, 680
BsuTUI ATCGAT 1 cut(s) 354
BtsCI GGATG 3 cut(s) 85, 94, 427
BtsIMutI CAGTG 4 cut(s) 176, 182, 654, 687
Cac8I GCNNGC 2 cut(s) 665, 801
CaiI CAGNNNCTG 1 cut(s) 656
Cfr10I RCCGGY 1 cut(s) 629
Cfr13I GGNCC 2 cut(s) 473, 527
ClaI ATCGAT 1 cut(s) 354
Csp6I GTAC 3 cut(s) 88, 459, 789
CviAII CATG 1 cut(s) 625
CviQI GTAC 3 cut(s) 88, 459, 789
DdeI CTNAG 3 cut(s) 6, 672, 726
DpnI GATC 1 cut(s) 357
DpnII GATC 1 cut(s) 355
DrdI GACNNNNNNGTC 1 cut(s) 34
DseDI GACNNNNNNGTC 1 cut(s) 34
Eco130I CCWWGG 2 cut(s) 233, 580
Eco31I GGTCTC 1 cut(s) 151
Eco47I GGWCC 2 cut(s) 473, 527
Eco57I CTGAAG 1 cut(s) 204
EcoNI CCTNNNNNAGG 1 cut(s) 219
EcoRI GAATTC 1 cut(s) 781
EcoT14I CCWWGG 2 cut(s) 233, 580
ErhI CCWWGG 2 cut(s) 233, 580
FaeI CATG 1 cut(s) 628
FaqI GGGAC 2 cut(s) 422, 540
FatI CATG 1 cut(s) 624
FauNDI CATATG 1 cut(s) 241
Fnu4HI GCNGC 3 cut(s) 246, 645, 648
FokI GGATG 3 cut(s) 81, 92, 434
Fsp4HI GCNGC 3 cut(s) 246, 645, 648
FspBI CTAG 3 cut(s) 197, 477, 792
GluI GCNGC 3 cut(s) 246, 645, 648
HaeIII GGCC 2 cut(s) 585, 680
HapII CCGG 1 cut(s) 630
Hin1II CATG 1 cut(s) 628
HinfI GANTC 1 cut(s) 521
HpaII CCGG 1 cut(s) 630
Hpy166II GTNNAC 1 cut(s) 389
Hpy188I TCNGA 6 cut(s) 136, 449, 594, 673, 737, 829
Hpy188III TCNNGA 1 cut(s) 525
Hpy8I GTNNAC 1 cut(s) 389
HpyAV CCTTC 2 cut(s) 8, 228
HpyCH4III ACNGT 1 cut(s) 508
HpyCH4V TGCA 5 cut(s) 25, 83, 248, 647, 820
HpyF10VI GCNNNNNNNGC 2 cut(s) 148, 251
HpyF3I CTNAG 3 cut(s) 6, 672, 726
Hsp92II CATG 1 cut(s) 628
Kzo9I GATC 1 cut(s) 355
LmnI GCTCC 2 cut(s) 289, 626
Lsp1109I GCAGC 3 cut(s) 232, 631, 659
LweI GCATC 3 cut(s) 70, 697, 711
MaeI CTAG 3 cut(s) 197, 477, 792
MaeIII GTNAC 2 cut(s) 109, 427
MalI GATC 1 cut(s) 357
MbiI CCGCTC 1 cut(s) 501
MboI GATC 1 cut(s) 355
MboII GAAGA 3 cut(s) 113, 616, 619
MfeI CAATTG 1 cut(s) 561
MhlI GDGCHC 1 cut(s) 805
MluCI AATT 4 cut(s) 561, 741, 781, 823
MlyI GAGTC 1 cut(s) 530
MmeI TCCRAC 2 cut(s) 427, 617
MnlI CCTC 7 cut(s) 65, 171, 225, 240, 562, 667, 670
MseI TTAA 3 cut(s) 116, 284, 555
MspA1I CMGCKG 1 cut(s) 718
MspI CCGG 1 cut(s) 630
MunI CAATTG 1 cut(s) 561
Mva1269I GAATGC 2 cut(s) 206, 225
MvnI CGCG 1 cut(s) 799
MwoI GCNNNNNNNGC 2 cut(s) 148, 251
NdeI CATATG 1 cut(s) 241
NdeII GATC 1 cut(s) 355
NlaIII CATG 1 cut(s) 628
NlaIV GGNNCC 2 cut(s) 451, 528
PcsI WCGNNNNNNNCGW 1 cut(s) 96
PctI GAATGC 2 cut(s) 206, 225
PflMI CCANNNNNTGG 1 cut(s) 470
PkrI GCNGC 3 cut(s) 247, 646, 649
PleI GAGTC 1 cut(s) 529
PpsI GAGTC 1 cut(s) 529
PspN4I GGNNCC 2 cut(s) 451, 528
PspPI GGNCC 2 cut(s) 473, 527
PsrI GAACNNNNNNTAC 2 cut(s) 442, 474
PstI CTGCAG 1 cut(s) 649
PstNI CAGNNNCTG 1 cut(s) 656
PvuII CAGCTG 1 cut(s) 718
RsaI GTAC 3 cut(s) 89, 460, 790
RsaNI GTAC 3 cut(s) 88, 459, 789
SaqAI TTAA 3 cut(s) 116, 284, 555
SatI GCNGC 3 cut(s) 246, 645, 648
Sau3AI GATC 1 cut(s) 355
Sau96I GGNCC 2 cut(s) 473, 527
SchI GAGTC 1 cut(s) 530
SduI GDGCHC 1 cut(s) 805
SetI ASST 9 cut(s) 116, 144, 256, 294, 339, 478, 623, 720, 797
SfaNI GCATC 3 cut(s) 70, 697, 711
SfcI CTRYAG 3 cut(s) 645, 713, 757
SinI GGWCC 2 cut(s) 473, 527
Sse9I AATT 4 cut(s) 561, 741, 781, 823
SsiI CCGC 2 cut(s) 453, 501
SspMI CTAG 3 cut(s) 197, 477, 792
StyI CCWWGG 2 cut(s) 233, 580
TaaI ACNGT 1 cut(s) 508
TaqI TCGA 1 cut(s) 354
TasI AATT 4 cut(s) 561, 741, 781, 823
TatI WGTACW 1 cut(s) 458
Tru1I TTAA 3 cut(s) 116, 284, 555
Tru9I TTAA 3 cut(s) 116, 284, 555
TscAI CASTG 4 cut(s) 176, 182, 661, 694
TseI GCWGC 3 cut(s) 245, 644, 647
TspDTI ATGAA 3 cut(s) 341, 504, 794
TspRI CASTG 4 cut(s) 176, 182, 661, 694
Van91I CCANNNNNTGG 1 cut(s) 470
VpaK11BI GGWCC 2 cut(s) 473, 527
XagI CCTNNNNNAGG 1 cut(s) 219
XapI RAATTY 2 cut(s) 781, 823
XspI CTAG 3 cut(s) 197, 477, 792
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.