Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7C

Orthogroup ID

OG0019058

Physical Location & Seq

Genomic Coordinates Forward (+)

3306923 .. 3307186

Gene Structure 264 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7CG048000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 264 bp

ATGGTCGGAGGCATCGCCGGCACCTGGGGAGCTCATATCGAAGGTCCGAGAATCAGCCGTTTCGACCATTCTGGTCGCTCCGTTGCTCTCCAAGGCCACAACGCCACCCTCATCGTTCTCGACACTTTTCTTCCCTGGTTCGAGTGGTACGGGTTCAACCCAGAGGTGGAGCACTGGGCGTTCACGGCGGAGGAGGACGAGATAATCATGGCGGCGCATTCCAAGTACTCTTCCATGGAGGAAGACGGCGTCGTCGGCGGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0001763 GO:0003674 GO:0005215 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005886 GO:0005887 GO:0005911 GO:0006810 GO:0006811 GO:0006812 GO:0007275 GO:0008150 GO:0008324 GO:0008519 GO:0009506 GO:0009628 GO:0009653 GO:0009719 GO:0009725 GO:0009737 GO:0009791 GO:0009987 GO:0010015 GO:0010033 GO:0010101 GO:0010102 GO:0010311 GO:0015075 GO:0015695 GO:0015696 GO:0016020 GO:0016021 GO:0016043 GO:0022607 GO:0022622 GO:0022857 GO:0030054 GO:0031224 GO:0031226 GO:0032501 GO:0032502 GO:0033993 GO:0034220 GO:0034622 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043621 GO:0043933 GO:0044085 GO:0044424 GO:0044425 GO:0044459 GO:0044464 GO:0048364 GO:0048527 GO:0048528 GO:0048646 GO:0048731 GO:0048856 GO:0050896 GO:0051179 GO:0051234 GO:0051258 GO:0055044 GO:0055085 GO:0065003 GO:0071702 GO:0071705 GO:0071840 GO:0071944 GO:0072488 GO:0080167 GO:0080181 GO:0090696 GO:0090697 GO:0090698 GO:0097305 GO:0098655 GO:0099402 GO:1901700 GO:1905392 GO:1905393

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Ammonium_transp

Protein Analysis

87

Amino Acids

9.62

Weight (kDa)

4.67

Isoelectric Point (pI)

41.76

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ammonium_transp	PF00909	1 - 57	2.1e-11	Ammonium Transporter Family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0019058)

Species	Orthologous Gene IDs
rosa_laevigata	RLG00000009589 RLG00000018158
rosa_multiflora	Rmu_sc0005615.1_g000004
rosa_samantha	Rh1AG161200 Rh2AG461000 Rh2BG474600 Rh2DG483300 Rh5DG176400 Rh7CG048000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	251
AccB1I	GGYRCC	1 cut(s)	20
AciI	CCGC	3 cut(s)	188, 212, 258
AcyI	GRCGYC	1 cut(s)	249
AfaI	GTAC	2 cut(s)	149, 227
AfiI	CCNNNNNNNGG	2 cut(s)	24, 166
AgsI	TTSAA	1 cut(s)	157
AjnI	CCWGG	2 cut(s)	23, 134
AluBI	AGCT	1 cut(s)	32
AluI	AGCT	1 cut(s)	32
Alw21I	GWGCWC	2 cut(s)	34, 174
AoxI	GGCC	1 cut(s)	94
AspLEI	GCGC	1 cut(s)	217
AspS9I	GGNCC	1 cut(s)	44
AvaII	GGWCC	1 cut(s)	44
BanI	GGYRCC	1 cut(s)	20
BanII	GRGCYC	1 cut(s)	34
BbsI	GAAGAC	1 cut(s)	249
Bbv12I	GWGCWC	2 cut(s)	34, 174
BceAI	ACGGC	3 cut(s)	42, 201, 262
BciT130I	CCWGG	2 cut(s)	25, 136
BisI	GCNGC	2 cut(s)	213, 259
BlsI	GCNGC	2 cut(s)	214, 260
BmcAI	AGTACT	1 cut(s)	227
Bme1390I	CCNGG	2 cut(s)	25, 136
Bme18I	GGWCC	1 cut(s)	44
BmgT120I	GGNCC	1 cut(s)	44
BmiI	GGNNCC	1 cut(s)	22
BmrFI	CCNGG	2 cut(s)	25, 136
BmrI	ACTGGG	1 cut(s)	184
BmsI	GCATC	1 cut(s)	21
BmuI	ACTGGG	1 cut(s)	184
BpiI	GAAGAC	1 cut(s)	249
BsaHI	GRCGYC	1 cut(s)	249
BsaJI	CCNNGG	4 cut(s)	24, 91, 134, 234
Bsc4I	CCNNNNNNNGG	2 cut(s)	24, 166
Bse118I	RCCGGY	1 cut(s)	17
Bse1I	ACTGG	1 cut(s)	179
BseBI	CCWGG	2 cut(s)	25, 136
BseDI	CCNNGG	4 cut(s)	24, 91, 134, 234
BseLI	CCNNNNNNNGG	2 cut(s)	24, 166
BseNI	ACTGG	1 cut(s)	179
BseRI	GAGGAG	1 cut(s)	206
BshFI	GGCC	1 cut(s)	96
BshNI	GGYRCC	1 cut(s)	20
BsiHKAI	GWGCWC	2 cut(s)	34, 174
BsiSI	CCGG	1 cut(s)	18
BslI	CCNNNNNNNGG	2 cut(s)	24, 166
BsmI	GAATGC	1 cut(s)	217
BsnI	GGCC	1 cut(s)	96
Bsp1286I	GDGCHC	2 cut(s)	34, 174
Bsp19I	CCATGG	1 cut(s)	234
BspACI	CCGC	3 cut(s)	188, 212, 258
BspANI	GGCC	1 cut(s)	96
BspLI	GGNNCC	1 cut(s)	22
BspT107I	GGYRCC	1 cut(s)	20
BsrFI	RCCGGY	1 cut(s)	17
BsrI	ACTGG	1 cut(s)	179
BssAI	RCCGGY	1 cut(s)	17
BssECI	CCNNGG	4 cut(s)	24, 91, 134, 234
BssNI	GRCGYC	1 cut(s)	249
BssT1I	CCWWGG	2 cut(s)	91, 234
Bst2UI	CCWGG	2 cut(s)	25, 136
Bst6I	CTCTTC	1 cut(s)	235
BstACI	GRCGYC	1 cut(s)	249
BstC8I	GCNNGC	1 cut(s)	19
BstDSI	CCRYGG	1 cut(s)	234
BstHHI	GCGC	1 cut(s)	217
BstMWI	GCNNNNNNNGC	3 cut(s)	18, 185, 255
BstNI	CCWGG	2 cut(s)	25, 136
BstSCI	CCNGG	2 cut(s)	23, 134
BstV2I	GAAGAC	1 cut(s)	249
BsuRI	GGCC	1 cut(s)	96
BtgI	CCRYGG	1 cut(s)	234
BtsIMutI	CAGTG	1 cut(s)	172
Cac8I	GCNNGC	1 cut(s)	19
CfoI	GCGC	1 cut(s)	217
Cfr10I	RCCGGY	1 cut(s)	17
Cfr13I	GGNCC	1 cut(s)	44
CseI	GACGC	1 cut(s)	238
Csp6I	GTAC	2 cut(s)	148, 226
CviAII	CATG	2 cut(s)	208, 235
CviJI	RGCY	4 cut(s)	32, 57, 96, 261
CviKI_1	RGCY	4 cut(s)	32, 57, 96, 261
CviQI	GTAC	2 cut(s)	148, 226
DrdI	GACNNNNNNGTC	1 cut(s)	251
DseDI	GACNNNNNNGTC	1 cut(s)	251
Eam1104I	CTCTTC	1 cut(s)	235
EarI	CTCTTC	1 cut(s)	235
EciI	GGCGGA	1 cut(s)	203
Ecl136II	GAGCTC	1 cut(s)	32
Eco130I	CCWWGG	2 cut(s)	91, 234
Eco24I	GRGCYC	1 cut(s)	34
Eco47I	GGWCC	1 cut(s)	44
Eco53kI	GAGCTC	1 cut(s)	32
EcoICRI	GAGCTC	1 cut(s)	32
EcoRII	CCWGG	2 cut(s)	23, 134
EcoT14I	CCWWGG	2 cut(s)	91, 234
EcoT38I	GRGCYC	1 cut(s)	34
ErhI	CCWWGG	2 cut(s)	91, 234
FaeI	CATG	2 cut(s)	211, 238
FaiI	YATR	3 cut(s)	36, 209, 236
FatI	CATG	2 cut(s)	207, 234
Fnu4HI	GCNGC	2 cut(s)	213, 259
FriOI	GRGCYC	1 cut(s)	34
Fsp4HI	GCNGC	2 cut(s)	213, 259
GlaI	GCGC	1 cut(s)	216
GluI	GCNGC	2 cut(s)	213, 259
HaeIII	GGCC	1 cut(s)	96
HapII	CCGG	1 cut(s)	18
HgaI	GACGC	1 cut(s)	238
HhaI	GCGC	1 cut(s)	217
Hin1I	GRCGYC	1 cut(s)	249
Hin1II	CATG	2 cut(s)	211, 238
Hin6I	GCGC	1 cut(s)	215
HinP1I	GCGC	1 cut(s)	215
HinfI	GANTC	1 cut(s)	51
HpaII	CCGG	1 cut(s)	18
Hpy166II	GTNNAC	1 cut(s)	183
Hpy188I	TCNGA	2 cut(s)	8, 48
Hpy188III	TCNNGA	1 cut(s)	119
Hpy8I	GTNNAC	1 cut(s)	183
Hpy99I	CGWCG	2 cut(s)	254, 257
HpyAV	CCTTC	1 cut(s)	35
HpyF10VI	GCNNNNNNNGC	3 cut(s)	18, 185, 255
Hsp92I	GRCGYC	1 cut(s)	249
Hsp92II	CATG	2 cut(s)	211, 238
HspAI	GCGC	1 cut(s)	215
KroI	GCCGGC	1 cut(s)	17
KroNI	GCCGGC	1 cut(s)	19
LmnI	GCTCC	3 cut(s)	29, 83, 169
LpnPI	CCDG	8 cut(s)	10, 31, 37, 57, 121, 148, 160, 174
LweI	GCATC	1 cut(s)	21
MboII	GAAGA	3 cut(s)	122, 222, 254
MhlI	GDGCHC	2 cut(s)	34, 174
MnlI	CCTC	5 cut(s)	119, 157, 184, 187, 232
MroNI	GCCGGC	1 cut(s)	17
MspI	CCGG	1 cut(s)	18
MspR9I	CCNGG	2 cut(s)	25, 136
Mva1269I	GAATGC	1 cut(s)	217
MvaI	CCWGG	2 cut(s)	25, 136
MwoI	GCNNNNNNNGC	3 cut(s)	18, 185, 255
NaeI	GCCGGC	1 cut(s)	19
NcoI	CCATGG	1 cut(s)	234
NgoMIV	GCCGGC	1 cut(s)	17
NlaIII	CATG	2 cut(s)	211, 238
NlaIV	GGNNCC	1 cut(s)	22
PctI	GAATGC	1 cut(s)	217
PdiI	GCCGGC	1 cut(s)	19
PfeI	GAWTC	1 cut(s)	51
PflFI	GACNNNGTC	1 cut(s)	248
PkrI	GCNGC	2 cut(s)	214, 260
Psp124BI	GAGCTC	1 cut(s)	34
Psp6I	CCWGG	2 cut(s)	23, 134
PspGI	CCWGG	2 cut(s)	23, 134
PspN4I	GGNNCC	1 cut(s)	22
PspPI	GGNCC	1 cut(s)	44
PsyI	GACNNNGTC	1 cut(s)	248
RsaI	GTAC	2 cut(s)	149, 227
RsaNI	GTAC	2 cut(s)	148, 226
SacI	GAGCTC	1 cut(s)	34
SatI	GCNGC	2 cut(s)	213, 259
Sau96I	GGNCC	1 cut(s)	44
ScaI	AGTACT	1 cut(s)	227
ScrFI	CCNGG	2 cut(s)	25, 136
SduI	GDGCHC	2 cut(s)	34, 174
SetI	ASST	4 cut(s)	26, 34, 46, 168
SfaNI	GCATC	1 cut(s)	21
SinI	GGWCC	1 cut(s)	44
SsiI	CCGC	3 cut(s)	188, 212, 258
SstI	GAGCTC	1 cut(s)	34
StyD4I	CCNGG	2 cut(s)	23, 134
StyI	CCWWGG	2 cut(s)	91, 234
TaqI	TCGA	4 cut(s)	39, 63, 120, 141
TatI	WGTACW	1 cut(s)	225
TauI	GCSGC	2 cut(s)	215, 261
TfiI	GAWTC	1 cut(s)	51
TscAI	CASTG	1 cut(s)	179
TspGWI	ACGGA	1 cut(s)	70
TspRI	CASTG	1 cut(s)	179
Tth111I	GACNNNGTC	1 cut(s)	248
VpaK11BI	GGWCC	1 cut(s)	44
ZrmI	AGTACT	1 cut(s)	227

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.