Rh2DG483300
MYB Family

transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2D
OG0019058
Physical Location & Seq
Reverse (-)
69877771 .. 69877998
228 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2DG483300.1

Sequence Viewer

Length: 228 bp
ATGGCGGAAGACAACTTCGTAGGCTGTTCGATTGAGGAGAATCATCACCACCACCTTAGGTCGGAGAAGAAATCGGCGACGATTTCGGTGTTTGGCCATGGATACAGTCCGACGAGCCCATTCAAATCCAACGTCAATGACTCCGGCGTGGTGCCTGCAGTCTCATCGGCGCAAGTGTTCAAGCCGGTGGCAAGAGCAGTGTTGAGGACGGAGTCGCCGCCTAGCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-binding

Protein Analysis

75

Amino Acids

8.06

Weight (kDa)

6.96

Isoelectric Point (pI)

69.43

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0019058)

Species Orthologous Gene IDs
rosa_laevigata RLG00000009589 RLG00000018158
rosa_multiflora Rmu_sc0005615.1_g000004
rosa_samantha Rh1AG161200 Rh2AG461000 Rh2BG474600 Rh2DG483300 Rh5DG176400 Rh7CG048000

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 151
AciI CCGC 2 cut(s) 5, 218
AcoI YGGCCR 1 cut(s) 94
AfiI CCNNNNNNNGG 1 cut(s) 61
AgsI TTSAA 2 cut(s) 124, 181
AluBI AGCT 1 cut(s) 225
AluI AGCT 1 cut(s) 225
Alw26I GTCTC 1 cut(s) 166
AoxI GGCC 1 cut(s) 94
ArsI GACNNNNNNTTYG 2 cut(s) 117, 149
AspLEI GCGC 1 cut(s) 172
AsuHPI GGTGA 1 cut(s) 38
AxyI CCTNAGG 1 cut(s) 56
BalI TGGCCA 1 cut(s) 96
BanI GGYRCC 1 cut(s) 151
BanII GRGCYC 1 cut(s) 119
BbsI GAAGAC 1 cut(s) 15
BcgI CGANNNNNNTGC 2 cut(s) 147, 181
BciVI GTATCC 1 cut(s) 95
BcoDI GTCTC 1 cut(s) 166
BfaI CTAG 2 cut(s) 222, 226
BfmI CTRYAG 1 cut(s) 156
BfuI GTATCC 1 cut(s) 95
BisI GCNGC 1 cut(s) 218
BlsI GCNGC 1 cut(s) 219
BmiI GGNNCC 1 cut(s) 153
BpiI GAAGAC 1 cut(s) 15
BsaJI CCNNGG 1 cut(s) 97
Bsc4I CCNNNNNNNGG 1 cut(s) 61
Bse118I RCCGGY 1 cut(s) 184
Bse21I CCTNAGG 1 cut(s) 56
BseDI CCNNGG 1 cut(s) 97
BseLI CCNNNNNNNGG 1 cut(s) 61
BseRI GAGGAG 1 cut(s) 50
BshFI GGCC 1 cut(s) 96
BshNI GGYRCC 1 cut(s) 151
BsiSI CCGG 2 cut(s) 144, 185
BslI CCNNNNNNNGG 1 cut(s) 61
BsmAI GTCTC 1 cut(s) 166
BsnI GGCC 1 cut(s) 96
Bsp1286I GDGCHC 1 cut(s) 119
Bsp19I CCATGG 1 cut(s) 97
BspACI CCGC 2 cut(s) 5, 218
BspANI GGCC 1 cut(s) 96
BspLI GGNNCC 1 cut(s) 153
BspMAI CTGCAG 1 cut(s) 160
BspT107I GGYRCC 1 cut(s) 151
BsrFI RCCGGY 1 cut(s) 184
BssAI RCCGGY 1 cut(s) 184
BssECI CCNNGG 1 cut(s) 97
BssT1I CCWWGG 1 cut(s) 97
Bst4CI ACNGT 1 cut(s) 107
BstC8I GCNNGC 1 cut(s) 156
BstDEI CTNAG 1 cut(s) 56
BstDSI CCRYGG 1 cut(s) 97
BstHHI GCGC 1 cut(s) 172
BstMAI GTCTC 1 cut(s) 166
BstSFI CTRYAG 1 cut(s) 156
BstV2I GAAGAC 1 cut(s) 15
Bsu36I CCTNAGG 1 cut(s) 56
BsuI GTATCC 1 cut(s) 95
BsuRI GGCC 1 cut(s) 96
BtgI CCRYGG 1 cut(s) 97
BtsI GCAGTG 1 cut(s) 204
BtsIMutI CAGTG 1 cut(s) 204
Cac8I GCNNGC 1 cut(s) 156
CfoI GCGC 1 cut(s) 172
Cfr10I RCCGGY 1 cut(s) 184
CviAII CATG 1 cut(s) 98
CviJI RGCY 5 cut(s) 24, 96, 117, 184, 225
CviKI_1 RGCY 5 cut(s) 24, 96, 117, 184, 225
DdeI CTNAG 1 cut(s) 56
EaeI YGGCCR 1 cut(s) 94
EciI GGCGGA 1 cut(s) 20
Eco130I CCWWGG 1 cut(s) 97
Eco24I GRGCYC 1 cut(s) 119
Eco81I CCTNAGG 1 cut(s) 56
EcoT14I CCWWGG 1 cut(s) 97
EcoT38I GRGCYC 1 cut(s) 119
ErhI CCWWGG 1 cut(s) 97
FaeI CATG 1 cut(s) 101
FaiI YATR 1 cut(s) 99
FatI CATG 1 cut(s) 97
Fnu4HI GCNGC 1 cut(s) 218
FriOI GRGCYC 1 cut(s) 119
Fsp4HI GCNGC 1 cut(s) 218
FspBI CTAG 2 cut(s) 222, 226
GlaI GCGC 1 cut(s) 171
GluI GCNGC 1 cut(s) 218
HaeIII GGCC 1 cut(s) 96
HapII CCGG 2 cut(s) 144, 185
HhaI GCGC 1 cut(s) 172
Hin1II CATG 1 cut(s) 101
Hin6I GCGC 1 cut(s) 170
HinP1I GCGC 1 cut(s) 170
HinfI GANTC 3 cut(s) 40, 140, 212
HpaII CCGG 2 cut(s) 144, 185
HphI GGTGA 1 cut(s) 38
Hpy188I TCNGA 2 cut(s) 64, 111
Hpy99I CGWCG 2 cut(s) 82, 115
HpyCH4III ACNGT 1 cut(s) 107
HpyCH4IV ACGT 1 cut(s) 132
HpyCH4V TGCA 1 cut(s) 158
HpyF3I CTNAG 1 cut(s) 56
HpySE526I ACGT 1 cut(s) 132
Hsp92II CATG 1 cut(s) 101
HspAI GCGC 1 cut(s) 170
LpnPI CCDG 3 cut(s) 157, 168, 198
MaeI CTAG 2 cut(s) 222, 226
MaeII ACGT 1 cut(s) 132
MboII GAAGA 2 cut(s) 20, 79
MhlI GDGCHC 1 cut(s) 119
MlsI TGGCCA 1 cut(s) 96
MluNI TGGCCA 1 cut(s) 96
MlyI GAGTC 2 cut(s) 134, 221
MmeI TCCRAC 3 cut(s) 42, 134, 153
MnlI CCTC 2 cut(s) 28, 198
Mox20I TGGCCA 1 cut(s) 96
MscI TGGCCA 1 cut(s) 96
Msp20I TGGCCA 1 cut(s) 96
MspI CCGG 2 cut(s) 144, 185
NcoI CCATGG 1 cut(s) 97
NlaIII CATG 1 cut(s) 101
NlaIV GGNNCC 1 cut(s) 153
PfeI GAWTC 1 cut(s) 40
PflFI GACNNNGTC 1 cut(s) 211
PkrI GCNGC 1 cut(s) 219
PleI GAGTC 2 cut(s) 134, 220
PpsI GAGTC 2 cut(s) 134, 220
PspN4I GGNNCC 1 cut(s) 153
PstI CTGCAG 1 cut(s) 160
PsyI GACNNNGTC 1 cut(s) 211
SatI GCNGC 1 cut(s) 218
SchI GAGTC 2 cut(s) 134, 221
SduI GDGCHC 1 cut(s) 119
SetI ASST 4 cut(s) 57, 62, 135, 227
SfcI CTRYAG 1 cut(s) 156
SgeI CNNG 9 cut(s) 110, 126, 156, 160, 167, 185, 193, 197, 204
SsiI CCGC 2 cut(s) 5, 218
SspMI CTAG 2 cut(s) 222, 226
StyI CCWWGG 1 cut(s) 97
TaaI ACNGT 1 cut(s) 107
TaiI ACGT 1 cut(s) 135
TaqI TCGA 1 cut(s) 29
TauI GCSGC 1 cut(s) 220
TfiI GAWTC 1 cut(s) 40
TscAI CASTG 1 cut(s) 204
TspGWI ACGGA 1 cut(s) 224
TspRI CASTG 1 cut(s) 204
Tth111I GACNNNGTC 1 cut(s) 211
XspI CTAG 2 cut(s) 222, 226
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.