RLG00000009589
MYB Family

transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr2
OG0019058
Physical Location & Seq
Forward (+)
54981919 .. 54982854
936 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000009589

Sequence Viewer

Length: 309 bp
ATGGGAAGCAACAGAGGGAGTTGGATCGGGTTAAGGGGCCGTGGAGCCCCGAAGACGGCGTCGTCGTCGGCGGAGGAGTTTCGATCGAGGAACAGCATCACCACCACCTCAGGCCAGAGAAGAAATCGGTCTGTTTCGGTGTCGGGCCTCAGATACAGTCCGACGAGCCTGTCCAAATCCGACGTCAGTGACTCTGGCATGGTGCCTGCAGTCTCATCGGCGCAAGTGTTCAGGCCGGTAGCGAGAGCAATGTTGAGCAGTGTTAAGGACGGAGTCACCGCCGAGCCAAAACGACATGATCTACAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-binding

Protein Analysis

103

Amino Acids

10.84

Weight (kDa)

11.55

Isoelectric Point (pI)

62.85

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0019058)

Species Orthologous Gene IDs
rosa_laevigata RLG00000009589 RLG00000018158
rosa_multiflora Rmu_sc0005615.1_g000004
rosa_samantha Rh1AG161200 Rh2AG461000 Rh2BG474600 Rh2DG483300 Rh5DG176400 Rh7CG048000

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 2 cut(s) 61, 169
AatII GACGTC 1 cut(s) 186
AccB1I GGYRCC 1 cut(s) 202
AciI CCGC 2 cut(s) 71, 279
AclWI GGATC 1 cut(s) 32
AcyI GRCGYC 2 cut(s) 59, 183
AfiI CCNNNNNNNGG 1 cut(s) 55
Alw26I GTCTC 1 cut(s) 217
AlwI GGATC 1 cut(s) 32
AoxI GGCC 4 cut(s) 37, 112, 145, 233
ArsI GACNNNNNNTTYG 4 cut(s) 44, 76, 168, 200
AspLEI GCGC 1 cut(s) 223
AspS9I GGNCC 2 cut(s) 37, 145
AsuHPI GGTGA 2 cut(s) 91, 268
AxyI CCTNAGG 1 cut(s) 109
BanI GGYRCC 1 cut(s) 202
BanII GRGCYC 1 cut(s) 49
BbsI GAAGAC 1 cut(s) 59
BceAI ACGGC 2 cut(s) 24, 72
BcgI CGANNNNNNTGC 2 cut(s) 198, 232
BcoDI GTCTC 1 cut(s) 217
BfmI CTRYAG 1 cut(s) 207
BmgT120I GGNCC 2 cut(s) 37, 145
BmiI GGNNCC 3 cut(s) 38, 46, 204
BmsI GCATC 1 cut(s) 105
BpiI GAAGAC 1 cut(s) 59
BsaHI GRCGYC 2 cut(s) 59, 183
BsaJI CCNNGG 1 cut(s) 40
Bsc4I CCNNNNNNNGG 1 cut(s) 55
Bse118I RCCGGY 1 cut(s) 235
Bse21I CCTNAGG 1 cut(s) 109
Bse3DI GCAATG 1 cut(s) 255
BseDI CCNNGG 1 cut(s) 40
BseLI CCNNNNNNNGG 1 cut(s) 55
BseMI GCAATG 1 cut(s) 255
BseMII CTCAG 2 cut(s) 123, 163
BseRI GAGGAG 1 cut(s) 89
Bsh1285I CGRYCG 1 cut(s) 86
BshFI GGCC 4 cut(s) 39, 114, 147, 235
BshNI GGYRCC 1 cut(s) 202
BsiEI CGRYCG 1 cut(s) 86
BsiSI CCGG 1 cut(s) 236
BslI CCNNNNNNNGG 1 cut(s) 55
BsmAI GTCTC 1 cut(s) 217
BsnI GGCC 4 cut(s) 39, 114, 147, 235
Bsp1286I GDGCHC 1 cut(s) 49
Bsp143I GATC 3 cut(s) 24, 83, 298
BspACI CCGC 2 cut(s) 71, 279
BspANI GGCC 4 cut(s) 39, 114, 147, 235
BspCNI CTCAG 2 cut(s) 122, 162
BspLI GGNNCC 3 cut(s) 38, 46, 204
BspMAI CTGCAG 1 cut(s) 211
BspPI GGATC 1 cut(s) 32
BspT107I GGYRCC 1 cut(s) 202
BsrDI GCAATG 1 cut(s) 255
BsrFI RCCGGY 1 cut(s) 235
BssAI RCCGGY 1 cut(s) 235
BssECI CCNNGG 1 cut(s) 40
BssMI GATC 3 cut(s) 24, 83, 298
BssNI GRCGYC 2 cut(s) 59, 183
Bst4CI ACNGT 1 cut(s) 158
BstACI GRCGYC 2 cut(s) 59, 183
BstC8I GCNNGC 1 cut(s) 207
BstDEI CTNAG 2 cut(s) 109, 149
BstDSI CCRYGG 1 cut(s) 40
BstHHI GCGC 1 cut(s) 223
BstKTI GATC 3 cut(s) 27, 86, 301
BstMAI GTCTC 1 cut(s) 217
BstMBI GATC 3 cut(s) 24, 83, 298
BstMCI CGRYCG 1 cut(s) 86
BstSFI CTRYAG 1 cut(s) 207
BstV2I GAAGAC 1 cut(s) 59
Bsu36I CCTNAGG 1 cut(s) 109
BsuRI GGCC 4 cut(s) 39, 114, 147, 235
BtgI CCRYGG 1 cut(s) 40
BtsI GCAGTG 1 cut(s) 265
BtsIMutI CAGTG 2 cut(s) 193, 265
Cac8I GCNNGC 1 cut(s) 207
CfoI GCGC 1 cut(s) 223
Cfr10I RCCGGY 1 cut(s) 235
Cfr13I GGNCC 2 cut(s) 37, 145
CseI GACGC 1 cut(s) 48
CviAII CATG 2 cut(s) 199, 296
CviJI RGCY 7 cut(s) 39, 47, 114, 147, 168, 235, 286
CviKI_1 RGCY 7 cut(s) 39, 47, 114, 147, 168, 235, 286
DdeI CTNAG 2 cut(s) 109, 149
DpnI GATC 3 cut(s) 26, 85, 300
DpnII GATC 3 cut(s) 24, 83, 298
DrdI GACNNNNNNGTC 2 cut(s) 61, 169
DseDI GACNNNNNNGTC 2 cut(s) 61, 169
EciI GGCGGA 1 cut(s) 86
Eco24I GRGCYC 1 cut(s) 49
Eco81I CCTNAGG 1 cut(s) 109
EcoT38I GRGCYC 1 cut(s) 49
FaeI CATG 2 cut(s) 202, 299
FaiI YATR 2 cut(s) 200, 297
FatI CATG 2 cut(s) 198, 295
FriOI GRGCYC 1 cut(s) 49
GlaI GCGC 1 cut(s) 222
HaeIII GGCC 4 cut(s) 39, 114, 147, 235
HapII CCGG 1 cut(s) 236
HgaI GACGC 1 cut(s) 48
HhaI GCGC 1 cut(s) 223
Hin1I GRCGYC 2 cut(s) 59, 183
Hin1II CATG 2 cut(s) 202, 299
Hin6I GCGC 1 cut(s) 221
HinP1I GCGC 1 cut(s) 221
HinfI GANTC 2 cut(s) 191, 273
HpaII CCGG 1 cut(s) 236
HphI GGTGA 2 cut(s) 91, 268
Hpy188I TCNGA 3 cut(s) 152, 162, 181
Hpy99I CGWCG 5 cut(s) 64, 67, 70, 166, 185
HpyCH4III ACNGT 1 cut(s) 158
HpyCH4IV ACGT 1 cut(s) 183
HpyCH4V TGCA 1 cut(s) 209
HpyF3I CTNAG 2 cut(s) 109, 149
HpySE526I ACGT 1 cut(s) 183
Hsp92I GRCGYC 2 cut(s) 59, 183
Hsp92II CATG 2 cut(s) 202, 299
HspAI GCGC 1 cut(s) 221
Kzo9I GATC 3 cut(s) 24, 83, 298
LmnI GCTCC 1 cut(s) 44
LpnPI CCDG 7 cut(s) 96, 128, 180, 182, 217, 219, 249
LweI GCATC 1 cut(s) 105
MaeII ACGT 1 cut(s) 183
MaeIII GTNAC 2 cut(s) 188, 274
MalI GATC 3 cut(s) 26, 85, 300
MboI GATC 3 cut(s) 24, 83, 298
MboII GAAGA 2 cut(s) 64, 132
MhlI GDGCHC 1 cut(s) 49
MlyI GAGTC 2 cut(s) 185, 282
MmeI TCCRAC 2 cut(s) 185, 204
MnlI CCTC 5 cut(s) 8, 67, 81, 118, 158
MseI TTAA 2 cut(s) 32, 264
MspI CCGG 1 cut(s) 236
NdeII GATC 3 cut(s) 24, 83, 298
NlaIII CATG 2 cut(s) 202, 299
NlaIV GGNNCC 3 cut(s) 38, 46, 204
NmeAIII GCCGAG 1 cut(s) 307
NmuCI GTSAC 2 cut(s) 188, 274
PcsI WCGNNNNNNNCGW 1 cut(s) 62
PflFI GACNNNGTC 2 cut(s) 58, 272
Ple19I CGATCG 1 cut(s) 86
PleI GAGTC 2 cut(s) 185, 281
PpsI GAGTC 2 cut(s) 185, 281
PspN4I GGNNCC 3 cut(s) 38, 46, 204
PspPI GGNCC 2 cut(s) 37, 145
PstI CTGCAG 1 cut(s) 211
PsyI GACNNNGTC 2 cut(s) 58, 272
PvuI CGATCG 1 cut(s) 86
SaqAI TTAA 2 cut(s) 32, 264
Sau3AI GATC 3 cut(s) 24, 83, 298
Sau96I GGNCC 2 cut(s) 37, 145
SchI GAGTC 2 cut(s) 185, 282
SduI GDGCHC 1 cut(s) 49
SetI ASST 2 cut(s) 110, 186
SfaNI GCATC 1 cut(s) 105
SfcI CTRYAG 1 cut(s) 207
SsiI CCGC 2 cut(s) 71, 279
TaaI ACNGT 1 cut(s) 158
TaiI ACGT 1 cut(s) 186
TaqI TCGA 2 cut(s) 82, 86
TaqII GACCGA 1 cut(s) 117
Tru1I TTAA 2 cut(s) 32, 264
Tru9I TTAA 2 cut(s) 32, 264
TscAI CASTG 2 cut(s) 193, 265
TseFI GTSAC 2 cut(s) 188, 274
Tsp45I GTSAC 2 cut(s) 188, 274
TspGWI ACGGA 1 cut(s) 285
TspRI CASTG 2 cut(s) 193, 265
Tth111I GACNNNGTC 2 cut(s) 58, 272
ZraI GACGTC 1 cut(s) 184
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.