Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1A

Orthogroup ID

OG0019058

Physical Location & Seq

Genomic Coordinates Reverse (-)

30640400 .. 30640852

Gene Structure 453 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1AG161200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 453 bp

ATGGTCGGAAGCATCGCTGGCCCCTGGGGAGCTCATATTGAAGGTCTGAGAATCAGCCGTTTCGACCATTCCGGTCGCTCCGTTGCTCTCCAAGGCCACAGCGCCACCCTCGTCATTCTCAACACTTTTCTTCTCTGGTTCGAGTCGTACGGGTTCAACCCTGAGGTGGAGCATCGGGTGTTCACAGCGGAGGAGGACGAGATAATCGCCGTGGCGCATTCCAAGTACTCTTGGCGGAAGACAGCGTCGTTGGCAGCTGAGGTGACTCGATCGAGAAGCATCATCACCACCACCTCAGGCCGGAGAAGAAATCAGCGACTGTTTCGGTGTTTGGCCAAGGATACAGTCCGACGAGCCCGGTTTCGGTGTTTGGCCGAGGATACAATCCGACGAGCCCATCCAGATCTGACGTCAGCGACTCCGGCTTGGTGCATGCAGTCTCGTCGGCGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0001763 GO:0003674 GO:0005215 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005886 GO:0005887 GO:0005911 GO:0006810 GO:0006811 GO:0006812 GO:0007275 GO:0008150 GO:0008324 GO:0008519 GO:0009506 GO:0009628 GO:0009653 GO:0009719 GO:0009725 GO:0009737 GO:0009791 GO:0009987 GO:0010015 GO:0010033 GO:0010101 GO:0010102 GO:0010311 GO:0015075 GO:0015695 GO:0015696 GO:0016020 GO:0016021 GO:0016043 GO:0022607 GO:0022622 GO:0022857 GO:0030054 GO:0031224 GO:0031226 GO:0032501 GO:0032502 GO:0033993 GO:0034220 GO:0034622 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043621 GO:0043933 GO:0044085 GO:0044424 GO:0044425 GO:0044459 GO:0044464 GO:0048364 GO:0048527 GO:0048528 GO:0048646 GO:0048731 GO:0048856 GO:0050896 GO:0051179 GO:0051234 GO:0051258 GO:0055044 GO:0055085 GO:0065003 GO:0071702 GO:0071705 GO:0071840 GO:0071944 GO:0072488 GO:0080167 GO:0080181 GO:0090696 GO:0090697 GO:0090698 GO:0097305 GO:0098655 GO:0099402 GO:1901700 GO:1905392 GO:1905393

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Ammonium_transp

Protein Analysis

150

Amino Acids

17.11

Weight (kDa)

10.91

Isoelectric Point (pI)

67.74

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ammonium_transp	PF00909	1 - 60	3.8e-07	Ammonium Transporter Family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Orthologous Genes (Group: OG0019058)

Species	Orthologous Gene IDs
rosa_laevigata	RLG00000009589 RLG00000018158
rosa_multiflora	Rmu_sc0005615.1_g000004
rosa_samantha	Rh1AG161200 Rh2AG461000 Rh2BG474600 Rh2DG483300 Rh5DG176400 Rh7CG048000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	413
AciI	CCGC	2 cut(s)	188, 235
AcoI	YGGCCR	2 cut(s)	333, 372
AcyI	GRCGYC	1 cut(s)	410
AfaI	GTAC	2 cut(s)	149, 227
AfiI	CCNNNNNNNGG	3 cut(s)	166, 300, 363
AgsI	TTSAA	2 cut(s)	41, 157
AjnI	CCWGG	1 cut(s)	23
AluBI	AGCT	2 cut(s)	32, 257
AluI	AGCT	2 cut(s)	32, 257
Alw21I	GWGCWC	1 cut(s)	34
Alw26I	GTCTC	1 cut(s)	444
AlwNI	CAGNNNCTG	1 cut(s)	319
AoxI	GGCC	5 cut(s)	19, 94, 298, 333, 372
ApeKI	GCWGC	1 cut(s)	254
AspLEI	GCGC	3 cut(s)	104, 217, 450
AspS9I	GGNCC	1 cut(s)	20
AsuC2I	CCSGG	1 cut(s)	358
AsuHPI	GGTGA	2 cut(s)	274, 277
AxyI	CCTNAGG	2 cut(s)	162, 295
BalI	TGGCCA	1 cut(s)	335
BanII	GRGCYC	3 cut(s)	34, 358, 397
BbsI	GAAGAC	1 cut(s)	245
Bbv12I	GWGCWC	1 cut(s)	34
BbvCI	CCTCAGC	1 cut(s)	258
BbvI	GCAGC	1 cut(s)	266
BccI	CCATC	1 cut(s)	405
BceAI	ACGGC	2 cut(s)	42, 194
BcgI	CGANNNNNNTGC	1 cut(s)	425
BciT130I	CCWGG	1 cut(s)	25
BciVI	GTATCC	2 cut(s)	334, 373
BcnI	CCSGG	1 cut(s)	358
BcoDI	GTCTC	1 cut(s)	444
BfoI	RGCGCY	2 cut(s)	105, 451
BfuI	GTATCC	2 cut(s)	334, 373
BglII	AGATCT	1 cut(s)	403
BisI	GCNGC	1 cut(s)	255
BlsI	GCNGC	1 cut(s)	256
BmcAI	AGTACT	1 cut(s)	227
Bme1390I	CCNGG	2 cut(s)	25, 358
BmgT120I	GGNCC	1 cut(s)	20
BmiI	GGNNCC	1 cut(s)	22
BmrFI	CCNGG	2 cut(s)	25, 358
BmsI	GCATC	3 cut(s)	21, 181, 288
BpiI	GAAGAC	1 cut(s)	245
Bpu10I	CCTNAGC	1 cut(s)	258
BpuMI	CCSGG	1 cut(s)	358
BsaHI	GRCGYC	1 cut(s)	410
BsaJI	CCNNGG	6 cut(s)	23, 24, 91, 210, 336, 375
BsaWI	WCCGGW	1 cut(s)	71
Bsc4I	CCNNNNNNNGG	3 cut(s)	166, 300, 363
Bse21I	CCTNAGG	2 cut(s)	162, 295
BseBI	CCWGG	1 cut(s)	25
BseDI	CCNNGG	6 cut(s)	23, 24, 91, 210, 336, 375
BseGI	GGATG	1 cut(s)	397
BseLI	CCNNNNNNNGG	3 cut(s)	166, 300, 363
BseMII	CTCAG	4 cut(s)	38, 153, 249, 309
BseRI	GAGGAG	1 cut(s)	206
BseXI	GCAGC	1 cut(s)	266
Bsh1285I	CGRYCG	2 cut(s)	76, 272
BshFI	GGCC	5 cut(s)	21, 96, 300, 335, 374
BsiEI	CGRYCG	2 cut(s)	76, 272
BsiHKAI	GWGCWC	1 cut(s)	34
BsiSI	CCGG	4 cut(s)	72, 301, 358, 422
BsiWI	CGTACG	1 cut(s)	147
BslI	CCNNNNNNNGG	3 cut(s)	166, 300, 363
BsmAI	GTCTC	1 cut(s)	444
BsmI	GAATGC	1 cut(s)	217
BsnI	GGCC	5 cut(s)	21, 96, 300, 335, 374
Bsp1286I	GDGCHC	3 cut(s)	34, 358, 397
Bsp143I	GATC	2 cut(s)	269, 403
BspACI	CCGC	2 cut(s)	188, 235
BspANI	GGCC	5 cut(s)	21, 96, 300, 335, 374
BspCNI	CTCAG	4 cut(s)	39, 154, 250, 308
BspLI	GGNNCC	1 cut(s)	22
BssECI	CCNNGG	6 cut(s)	23, 24, 91, 210, 336, 375
BssMI	GATC	2 cut(s)	269, 403
BssNI	GRCGYC	1 cut(s)	410
BssT1I	CCWWGG	2 cut(s)	91, 336
Bst2UI	CCWGG	1 cut(s)	25
Bst4CI	ACNGT	2 cut(s)	321, 346
BstACI	GRCGYC	1 cut(s)	410
BstC8I	GCNNGC	2 cut(s)	19, 434
BstDEI	CTNAG	4 cut(s)	47, 162, 258, 295
BstDSI	CCRYGG	1 cut(s)	210
BstF5I	GGATG	1 cut(s)	397
BstH2I	RGCGCY	2 cut(s)	105, 451
BstHHI	GCGC	3 cut(s)	104, 217, 450
BstKTI	GATC	2 cut(s)	272, 406
BstMAI	GTCTC	1 cut(s)	444
BstMBI	GATC	2 cut(s)	269, 403
BstMCI	CGRYCG	2 cut(s)	76, 272
BstMWI	GCNNNNNNNGC	3 cut(s)	18, 251, 422
BstNI	CCWGG	1 cut(s)	25
BstNSI	RCATGY	1 cut(s)	436
BstSCI	CCNGG	2 cut(s)	23, 356
BstV1I	GCAGC	1 cut(s)	266
BstV2I	GAAGAC	1 cut(s)	245
BstX2I	RGATCY	1 cut(s)	403
BstYI	RGATCY	1 cut(s)	403
Bsu36I	CCTNAGG	2 cut(s)	162, 295
BsuI	GTATCC	2 cut(s)	334, 373
BsuRI	GGCC	5 cut(s)	21, 96, 300, 335, 374
BtgI	CCRYGG	1 cut(s)	210
BtsCI	GGATG	1 cut(s)	397
Cac8I	GCNNGC	2 cut(s)	19, 434
CaiI	CAGNNNCTG	1 cut(s)	319
CfoI	GCGC	3 cut(s)	104, 217, 450
Cfr13I	GGNCC	1 cut(s)	20
CseI	GACGC	1 cut(s)	234
Csp6I	GTAC	2 cut(s)	148, 226
CviAII	CATG	1 cut(s)	433
CviQI	GTAC	2 cut(s)	148, 226
DdeI	CTNAG	4 cut(s)	47, 162, 258, 295
DpnI	GATC	2 cut(s)	271, 405
DpnII	GATC	2 cut(s)	269, 403
EaeI	YGGCCR	2 cut(s)	333, 372
EciI	GGCGGA	1 cut(s)	250
Ecl136II	GAGCTC	1 cut(s)	32
Eco130I	CCWWGG	2 cut(s)	91, 336
Eco24I	GRGCYC	3 cut(s)	34, 358, 397
Eco53kI	GAGCTC	1 cut(s)	32
Eco81I	CCTNAGG	2 cut(s)	162, 295
EcoICRI	GAGCTC	1 cut(s)	32
EcoRII	CCWGG	1 cut(s)	23
EcoT14I	CCWWGG	2 cut(s)	91, 336
EcoT38I	GRGCYC	3 cut(s)	34, 358, 397
ErhI	CCWWGG	2 cut(s)	91, 336
FaeI	CATG	1 cut(s)	436
FaiI	YATR	2 cut(s)	36, 434
FatI	CATG	1 cut(s)	432
Fnu4HI	GCNGC	1 cut(s)	255
FokI	GGATG	1 cut(s)	384
FriOI	GRGCYC	3 cut(s)	34, 358, 397
Fsp4HI	GCNGC	1 cut(s)	255
GlaI	GCGC	3 cut(s)	103, 216, 449
GluI	GCNGC	1 cut(s)	255
HaeII	RGCGCY	2 cut(s)	105, 451
HaeIII	GGCC	5 cut(s)	21, 96, 300, 335, 374
HapII	CCGG	4 cut(s)	72, 301, 358, 422
HgaI	GACGC	1 cut(s)	234
HhaI	GCGC	3 cut(s)	104, 217, 450
Hin1I	GRCGYC	1 cut(s)	410
Hin1II	CATG	1 cut(s)	436
Hin6I	GCGC	3 cut(s)	102, 215, 448
HinP1I	GCGC	3 cut(s)	102, 215, 448
HinfI	GANTC	4 cut(s)	51, 143, 265, 418
HpaII	CCGG	4 cut(s)	72, 301, 358, 422
HphI	GGTGA	2 cut(s)	274, 277
Hpy166II	GTNNAC	1 cut(s)	183
Hpy188I	TCNGA	5 cut(s)	8, 48, 350, 389, 408
Hpy188III	TCNNGA	2 cut(s)	273, 401
Hpy8I	GTNNAC	1 cut(s)	183
Hpy99I	CGWCG	4 cut(s)	250, 354, 393, 447
HpyAV	CCTTC	1 cut(s)	35
HpyCH4III	ACNGT	2 cut(s)	321, 346
HpyCH4IV	ACGT	1 cut(s)	410
HpyCH4V	TGCA	2 cut(s)	432, 436
HpyF10VI	GCNNNNNNNGC	3 cut(s)	18, 251, 422
HpyF3I	CTNAG	4 cut(s)	47, 162, 258, 295
HpySE526I	ACGT	1 cut(s)	410
Hsp92I	GRCGYC	1 cut(s)	410
Hsp92II	CATG	1 cut(s)	436
HspAI	GCGC	3 cut(s)	102, 215, 448
Kzo9I	GATC	2 cut(s)	269, 403
LmnI	GCTCC	3 cut(s)	29, 83, 169
Lsp1109I	GCAGC	1 cut(s)	266
LweI	GCATC	3 cut(s)	21, 181, 288
MaeII	ACGT	1 cut(s)	410
MaeIII	GTNAC	1 cut(s)	262
MalI	GATC	2 cut(s)	271, 405
MboI	GATC	2 cut(s)	269, 403
MboII	GAAGA	3 cut(s)	122, 250, 318
MflI	RGATCY	1 cut(s)	403
MhlI	GDGCHC	3 cut(s)	34, 358, 397
MlsI	TGGCCA	1 cut(s)	335
MluNI	TGGCCA	1 cut(s)	335
MlyI	GAGTC	3 cut(s)	152, 259, 412
MmeI	TCCRAC	2 cut(s)	373, 412
MnlI	CCTC	7 cut(s)	119, 157, 184, 187, 253, 304, 370
Mox20I	TGGCCA	1 cut(s)	335
MscI	TGGCCA	1 cut(s)	335
Msp20I	TGGCCA	1 cut(s)	335
MspA1I	CMGCKG	2 cut(s)	188, 257
MspI	CCGG	4 cut(s)	72, 301, 358, 422
MspR9I	CCNGG	2 cut(s)	25, 358
Mva1269I	GAATGC	1 cut(s)	217
MvaI	CCWGG	1 cut(s)	25
MwoI	GCNNNNNNNGC	3 cut(s)	18, 251, 422
NciI	CCSGG	1 cut(s)	358
NdeII	GATC	2 cut(s)	269, 403
NlaIII	CATG	1 cut(s)	436
NlaIV	GGNNCC	1 cut(s)	22
NmeAIII	GCCGAG	1 cut(s)	400
NmuCI	GTSAC	1 cut(s)	262
NspI	RCATGY	1 cut(s)	436
PaeI	GCATGC	1 cut(s)	436
PasI	CCCWGGG	1 cut(s)	24
PctI	GAATGC	1 cut(s)	217
PfeI	GAWTC	1 cut(s)	51
Pfl23II	CGTACG	1 cut(s)	147
PflFI	GACNNNGTC	1 cut(s)	244
PkrI	GCNGC	1 cut(s)	256
Ple19I	CGATCG	1 cut(s)	272
PleI	GAGTC	3 cut(s)	151, 259, 412
PpsI	GAGTC	3 cut(s)	151, 259, 412
Psp124BI	GAGCTC	1 cut(s)	34
Psp6I	CCWGG	1 cut(s)	23
PspGI	CCWGG	1 cut(s)	23
PspLI	CGTACG	1 cut(s)	147
PspN4I	GGNNCC	1 cut(s)	22
PspPI	GGNCC	1 cut(s)	20
PstNI	CAGNNNCTG	1 cut(s)	319
PsuI	RGATCY	1 cut(s)	403
PsyI	GACNNNGTC	1 cut(s)	244
PvuI	CGATCG	1 cut(s)	272
PvuII	CAGCTG	1 cut(s)	257
RsaI	GTAC	2 cut(s)	149, 227
RsaNI	GTAC	2 cut(s)	148, 226
SacI	GAGCTC	1 cut(s)	34
SatI	GCNGC	1 cut(s)	255
Sau3AI	GATC	2 cut(s)	269, 403
Sau96I	GGNCC	1 cut(s)	20
ScaI	AGTACT	1 cut(s)	227
SchI	GAGTC	3 cut(s)	152, 259, 412
ScrFI	CCNGG	2 cut(s)	25, 358
SduI	GDGCHC	3 cut(s)	34, 358, 397
SetI	ASST	7 cut(s)	34, 46, 168, 259, 264, 296, 413
SfaNI	GCATC	3 cut(s)	21, 181, 288
SphI	GCATGC	1 cut(s)	436
SsiI	CCGC	2 cut(s)	188, 235
SstI	GAGCTC	1 cut(s)	34
StyD4I	CCNGG	2 cut(s)	23, 356
StyI	CCWWGG	2 cut(s)	91, 336
TaaI	ACNGT	2 cut(s)	321, 346
TaiI	ACGT	1 cut(s)	413
TaqI	TCGA	4 cut(s)	63, 141, 268, 272
TatI	WGTACW	1 cut(s)	225
TfiI	GAWTC	1 cut(s)	51
TseFI	GTSAC	1 cut(s)	262
TseI	GCWGC	1 cut(s)	254
Tsp45I	GTSAC	1 cut(s)	262
TspGWI	ACGGA	1 cut(s)	70
Tth111I	GACNNNGTC	1 cut(s)	244
XceI	RCATGY	1 cut(s)	436
ZraI	GACGTC	1 cut(s)	411
ZrmI	AGTACT	1 cut(s)	227

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.