RLG00000018158
MYB Family

transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
OG0019058
Physical Location & Seq
Forward (+)
26216751 .. 26217457
707 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000018158

Sequence Viewer

Length: 414 bp
ATGCACAATGGATGCATACAATTCCAATCTCTCAAAGCCAACAGAGGGAGTTGGATCGGGTTAAGGGGCCGTGGAGCCCCAAAGGTGGCGTCGTCATCGGCGGAGGCGTTTCAATCGAGGAGCAGCATCACCACCACCTTAGGCTCGAGAAGAAATCGGCCTGTTTCAGTGTCGGGTCTCAGATACAGTCAGACGAGCCCGTTCGGATCCGATGTTAGTGACTCCGGCGTGGTGCCTGCAGTCTCGTTAGCGCAGGTGTTCAGGCCGGTGGCGAGAGCAGTGTTAAGGACGGAGTCGCCGCCGAGCCAGAACGACATGATCTACAATGAACCGGAGCCGTCAAATCTGCTGACTCTGGAGGCTACTCGACCGAGAAGAAAGAACGACGTCGTTGCAGTAGCAGGACGAGACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-binding

Protein Analysis

138

Amino Acids

14.74

Weight (kDa)

11.03

Isoelectric Point (pI)

73.35

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0019058)

Species Orthologous Gene IDs
rosa_laevigata RLG00000009589 RLG00000018158
rosa_multiflora Rmu_sc0005615.1_g000004
rosa_samantha Rh1AG161200 Rh2AG461000 Rh2BG474600 Rh2DG483300 Rh5DG176400 Rh7CG048000

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 244
AatII GACGTC 1 cut(s) 390
Acc36I ACCTGC 1 cut(s) 244
AccB1I GGYRCC 1 cut(s) 232
AciI CCGC 2 cut(s) 101, 299
AclWI GGATC 3 cut(s) 62, 201, 214
AcyI GRCGYC 2 cut(s) 89, 387
AfiI CCNNNNNNNGG 2 cut(s) 45, 85
AgsI TTSAA 1 cut(s) 113
Alw26I GTCTC 3 cut(s) 182, 247, 402
AlwI GGATC 3 cut(s) 62, 201, 214
Ama87I CYCGRG 1 cut(s) 145
AoxI GGCC 3 cut(s) 67, 158, 263
ApeKI GCWGC 1 cut(s) 123
ArsI GACNNNNNNTTYG 2 cut(s) 74, 106
AspLEI GCGC 1 cut(s) 253
AspS9I GGNCC 1 cut(s) 67
AsuHPI GGTGA 1 cut(s) 121
AvaI CYCGRG 1 cut(s) 145
AxyI CCTNAGG 1 cut(s) 139
BamHI GGATCC 1 cut(s) 206
BanI GGYRCC 1 cut(s) 232
BanII GRGCYC 2 cut(s) 79, 200
BbvI GCAGC 1 cut(s) 135
BceAI ACGGC 2 cut(s) 54, 322
BcgI CGANNNNNNTGC 2 cut(s) 374, 408
BcoDI GTCTC 3 cut(s) 182, 247, 402
BfmI CTRYAG 1 cut(s) 237
BfuAI ACCTGC 1 cut(s) 244
BisI GCNGC 2 cut(s) 124, 299
BlsI GCNGC 2 cut(s) 125, 300
BmeT110I CYCGRG 1 cut(s) 145
BmgT120I GGNCC 1 cut(s) 67
BmiI GGNNCC 5 cut(s) 68, 76, 208, 234, 336
BmsI GCATC 2 cut(s) 2, 135
BpmI CTGGAG 1 cut(s) 377
BsaHI GRCGYC 2 cut(s) 89, 387
BsaI GGTCTC 1 cut(s) 182
BsaJI CCNNGG 1 cut(s) 70
BsaWI WCCGGW 1 cut(s) 331
Bsc4I CCNNNNNNNGG 2 cut(s) 45, 85
Bse118I RCCGGY 1 cut(s) 265
Bse21I CCTNAGG 1 cut(s) 139
BseDI CCNNGG 1 cut(s) 70
BseGI GGATG 1 cut(s) 17
BseLI CCNNNNNNNGG 2 cut(s) 45, 85
BseMII CTCAG 1 cut(s) 193
BseRI GAGGAG 1 cut(s) 133
BseXI GCAGC 1 cut(s) 135
Bsh1285I CGRYCG 1 cut(s) 371
BshFI GGCC 3 cut(s) 69, 160, 265
BshNI GGYRCC 1 cut(s) 232
BsiEI CGRYCG 1 cut(s) 371
BsiHKCI CYCGRG 1 cut(s) 145
BsiSI CCGG 3 cut(s) 225, 266, 332
BslI CCNNNNNNNGG 2 cut(s) 45, 85
BsmAI GTCTC 3 cut(s) 182, 247, 402
BsnI GGCC 3 cut(s) 69, 160, 265
Bso31I GGTCTC 1 cut(s) 182
BsoBI CYCGRG 1 cut(s) 145
Bsp1286I GDGCHC 2 cut(s) 79, 200
Bsp143I GATC 3 cut(s) 54, 206, 318
BspACI CCGC 2 cut(s) 101, 299
BspANI GGCC 3 cut(s) 69, 160, 265
BspCNI CTCAG 1 cut(s) 192
BspLI GGNNCC 5 cut(s) 68, 76, 208, 234, 336
BspMAI CTGCAG 1 cut(s) 241
BspMI ACCTGC 1 cut(s) 244
BspPI GGATC 3 cut(s) 62, 201, 214
BspT107I GGYRCC 1 cut(s) 232
BspTNI GGTCTC 1 cut(s) 182
BsrFI RCCGGY 1 cut(s) 265
BssAI RCCGGY 1 cut(s) 265
BssECI CCNNGG 1 cut(s) 70
BssMI GATC 3 cut(s) 54, 206, 318
BssNI GRCGYC 2 cut(s) 89, 387
Bst4CI ACNGT 1 cut(s) 188
BstACI GRCGYC 2 cut(s) 89, 387
BstC8I GCNNGC 1 cut(s) 237
BstDEI CTNAG 2 cut(s) 139, 179
BstDSI CCRYGG 1 cut(s) 70
BstF5I GGATG 1 cut(s) 17
BstHHI GCGC 1 cut(s) 253
BstKTI GATC 3 cut(s) 57, 209, 321
BstMAI GTCTC 3 cut(s) 182, 247, 402
BstMBI GATC 3 cut(s) 54, 206, 318
BstMCI CGRYCG 1 cut(s) 371
BstSFI CTRYAG 1 cut(s) 237
BstV1I GCAGC 1 cut(s) 135
BstX2I RGATCY 1 cut(s) 206
BstYI RGATCY 1 cut(s) 206
Bsu36I CCTNAGG 1 cut(s) 139
BsuRI GGCC 3 cut(s) 69, 160, 265
BtgI CCRYGG 1 cut(s) 70
BtsCI GGATG 1 cut(s) 17
BtsI GCAGTG 1 cut(s) 285
BtsIMutI CAGTG 2 cut(s) 174, 285
BveI ACCTGC 1 cut(s) 244
Cac8I GCNNGC 1 cut(s) 237
CfoI GCGC 1 cut(s) 253
Cfr10I RCCGGY 1 cut(s) 265
Cfr13I GGNCC 1 cut(s) 67
CseI GACGC 1 cut(s) 78
CviAII CATG 1 cut(s) 316
DdeI CTNAG 2 cut(s) 139, 179
DpnI GATC 3 cut(s) 56, 208, 320
DpnII GATC 3 cut(s) 54, 206, 318
EciI GGCGGA 1 cut(s) 116
Eco24I GRGCYC 2 cut(s) 79, 200
Eco31I GGTCTC 1 cut(s) 182
Eco81I CCTNAGG 1 cut(s) 139
Eco88I CYCGRG 1 cut(s) 145
EcoT22I ATGCAT 1 cut(s) 17
EcoT38I GRGCYC 2 cut(s) 79, 200
FaeI CATG 1 cut(s) 319
FaiI YATR 2 cut(s) 17, 317
FatI CATG 1 cut(s) 315
Fnu4HI GCNGC 2 cut(s) 124, 299
FokI GGATG 1 cut(s) 24
FriOI GRGCYC 2 cut(s) 79, 200
Fsp4HI GCNGC 2 cut(s) 124, 299
GlaI GCGC 1 cut(s) 252
GluI GCNGC 2 cut(s) 124, 299
GsuI CTGGAG 1 cut(s) 377
HaeIII GGCC 3 cut(s) 69, 160, 265
HapII CCGG 3 cut(s) 225, 266, 332
HgaI GACGC 1 cut(s) 78
HhaI GCGC 1 cut(s) 253
Hin1I GRCGYC 2 cut(s) 89, 387
Hin1II CATG 1 cut(s) 319
Hin6I GCGC 1 cut(s) 251
HinP1I GCGC 1 cut(s) 251
HinfI GANTC 3 cut(s) 221, 293, 352
HpaII CCGG 3 cut(s) 225, 266, 332
HphI GGTGA 1 cut(s) 121
Hpy188I TCNGA 4 cut(s) 182, 192, 206, 211
Hpy188III TCNNGA 2 cut(s) 147, 356
Hpy99I CGWCG 3 cut(s) 94, 389, 392
HpyCH4III ACNGT 1 cut(s) 188
HpyCH4IV ACGT 1 cut(s) 387
HpyCH4V TGCA 4 cut(s) 4, 15, 239, 395
HpyF3I CTNAG 2 cut(s) 139, 179
HpySE526I ACGT 1 cut(s) 387
Hsp92I GRCGYC 2 cut(s) 89, 387
Hsp92II CATG 1 cut(s) 319
HspAI GCGC 1 cut(s) 251
Kzo9I GATC 3 cut(s) 54, 206, 318
LmnI GCTCC 3 cut(s) 74, 120, 334
Lsp1109I GCAGC 1 cut(s) 135
LweI GCATC 2 cut(s) 2, 135
MaeII ACGT 1 cut(s) 387
MaeIII GTNAC 1 cut(s) 218
MalI GATC 3 cut(s) 56, 208, 320
MboI GATC 3 cut(s) 54, 206, 318
MboII GAAGA 2 cut(s) 162, 387
MflI RGATCY 1 cut(s) 206
MhlI GDGCHC 2 cut(s) 79, 200
MluCI AATT 1 cut(s) 20
MlyI GAGTC 3 cut(s) 215, 302, 346
MmeI TCCRAC 1 cut(s) 32
MnlI CCTC 4 cut(s) 38, 97, 111, 352
Mph1103I ATGCAT 1 cut(s) 17
MseI TTAA 2 cut(s) 62, 284
MspI CCGG 3 cut(s) 225, 266, 332
NdeII GATC 3 cut(s) 54, 206, 318
NlaIII CATG 1 cut(s) 319
NlaIV GGNNCC 5 cut(s) 68, 76, 208, 234, 336
NmeAIII GCCGAG 1 cut(s) 327
NmuCI GTSAC 1 cut(s) 218
NsiI ATGCAT 1 cut(s) 17
PaeR7I CTCGAG 1 cut(s) 145
PaqCI CACCTGC 1 cut(s) 244
PcsI WCGNNNNNNNCGW 1 cut(s) 104
PflFI GACNNNGTC 1 cut(s) 292
PkrI GCNGC 2 cut(s) 125, 300
PleI GAGTC 3 cut(s) 215, 301, 346
PpsI GAGTC 3 cut(s) 215, 301, 346
PspN4I GGNNCC 5 cut(s) 68, 76, 208, 234, 336
PspPI GGNCC 1 cut(s) 67
PstI CTGCAG 1 cut(s) 241
PsuI RGATCY 1 cut(s) 206
PsyI GACNNNGTC 1 cut(s) 292
SaqAI TTAA 2 cut(s) 62, 284
SatI GCNGC 2 cut(s) 124, 299
Sau3AI GATC 3 cut(s) 54, 206, 318
Sau96I GGNCC 1 cut(s) 67
SchI GAGTC 3 cut(s) 215, 302, 346
SduI GDGCHC 2 cut(s) 79, 200
SetI ASST 4 cut(s) 87, 140, 258, 390
SfaNI GCATC 2 cut(s) 2, 135
SfcI CTRYAG 1 cut(s) 237
Sfr274I CTCGAG 1 cut(s) 145
SlaI CTCGAG 1 cut(s) 145
SmlI CTYRAG 1 cut(s) 145
SmoI CTYRAG 1 cut(s) 145
Sse9I AATT 1 cut(s) 20
SsiI CCGC 2 cut(s) 101, 299
TaaI ACNGT 1 cut(s) 188
TaiI ACGT 1 cut(s) 390
TaqI TCGA 3 cut(s) 116, 146, 367
TaqII GACCGA 1 cut(s) 385
TasI AATT 1 cut(s) 20
TauI GCSGC 1 cut(s) 301
Tru1I TTAA 2 cut(s) 62, 284
Tru9I TTAA 2 cut(s) 62, 284
TscAI CASTG 2 cut(s) 174, 285
TseFI GTSAC 1 cut(s) 218
TseI GCWGC 1 cut(s) 123
Tsp45I GTSAC 1 cut(s) 218
TspDTI ATGAA 1 cut(s) 342
TspGWI ACGGA 1 cut(s) 305
TspRI CASTG 2 cut(s) 174, 285
Tth111I GACNNNGTC 1 cut(s) 292
XhoI CTCGAG 1 cut(s) 145
ZraI GACGTC 1 cut(s) 388
Zsp2I ATGCAT 1 cut(s) 17
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.