Rh5DG176400
MYB Family

transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5D
OG0019058
Physical Location & Seq
Forward (+)
19074339 .. 19080366
6028 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5DG176400.1

Sequence Viewer

Length: 381 bp
ATGTTAGTCACTAAACATGCAACAACGTACATTCCAAATGTTCTTGATTATGGTGACCAAGTGTTCAACCCGGAGGTGAAGCACCGGACGTTCACGGCGGAGGAGGATGAGAGAATCGCTGCGGAGCATTCCAAGTACTCGTCCATGGCGGAAGACGGCTTCATCGGTGGCGGAGACTGTTCGATCGAGGAGCATCATCACCACCACCTCAGGCCGGAGAAGAAATCGGCGACGGTTTCGGTGTTTGGTAGCGGATACAGTCCAACGAGCCCATCCGAATCTGACGTCACCGACTCCAGCGTGGTGCTTGCAGTCTCGTCGGTGCAGGTGTTCAGGCCAATGGCAAGAGCAGTGTTGAGGATGGAGTGGCCGCCGATATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-binding

Protein Analysis

126

Amino Acids

13.96

Weight (kDa)

5.52

Isoelectric Point (pI)

47.05

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0019058)

Species Orthologous Gene IDs
rosa_laevigata RLG00000009589 RLG00000018158
rosa_multiflora Rmu_sc0005615.1_g000004
rosa_samantha Rh1AG161200 Rh2AG461000 Rh2BG474600 Rh2DG483300 Rh5DG176400 Rh7CG048000

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 316
AatII GACGTC 1 cut(s) 288
Acc36I ACCTGC 1 cut(s) 316
AciI CCGC 6 cut(s) 98, 122, 149, 171, 252, 371
AcoI YGGCCR 1 cut(s) 368
AcyI GRCGYC 1 cut(s) 285
AfaI GTAC 2 cut(s) 29, 137
AfiI CCNNNNNNNGG 1 cut(s) 214
AgsI TTSAA 1 cut(s) 67
Alw26I GTCTC 2 cut(s) 168, 319
AoxI GGCC 3 cut(s) 212, 335, 368
ApeKI GCWGC 1 cut(s) 119
ArsI GACNNNNNNTTYG 2 cut(s) 270, 302
AsuC2I CCSGG 1 cut(s) 71
AsuHPI GGTGA 4 cut(s) 65, 88, 191, 280
AxyI CCTNAGG 1 cut(s) 209
BanII GRGCYC 1 cut(s) 272
BbsI GAAGAC 1 cut(s) 159
BbvI GCAGC 1 cut(s) 106
BccI CCATC 2 cut(s) 280, 355
BceAI ACGGC 2 cut(s) 111, 172
BcgI CGANNNNNNTGC 2 cut(s) 300, 334
BciVI GTATCC 1 cut(s) 248
BcnI CCSGG 1 cut(s) 71
BcoDI GTCTC 2 cut(s) 168, 319
BfuAI ACCTGC 1 cut(s) 316
BfuI GTATCC 1 cut(s) 248
BisI GCNGC 2 cut(s) 120, 371
BlsI GCNGC 2 cut(s) 121, 372
BmcAI AGTACT 1 cut(s) 137
Bme1390I CCNGG 1 cut(s) 71
BmrFI CCNGG 1 cut(s) 71
BmsI GCATC 1 cut(s) 202
BpiI GAAGAC 1 cut(s) 159
BpmI CTGGAG 1 cut(s) 280
BpuMI CCSGG 1 cut(s) 71
BsaHI GRCGYC 1 cut(s) 285
BsaJI CCNNGG 1 cut(s) 144
BsaWI WCCGGW 1 cut(s) 84
Bsc4I CCNNNNNNNGG 1 cut(s) 214
Bse21I CCTNAGG 1 cut(s) 209
BseDI CCNNGG 1 cut(s) 144
BseGI GGATG 3 cut(s) 112, 272, 366
BseLI CCNNNNNNNGG 1 cut(s) 214
BseMII CTCAG 1 cut(s) 223
BseRI GAGGAG 2 cut(s) 116, 203
BseXI GCAGC 1 cut(s) 106
BsgI GTGCAG 1 cut(s) 344
Bsh1285I CGRYCG 1 cut(s) 186
BshFI GGCC 3 cut(s) 214, 337, 370
BsiEI CGRYCG 1 cut(s) 186
BsiSI CCGG 3 cut(s) 71, 85, 215
BslI CCNNNNNNNGG 1 cut(s) 214
BsmAI GTCTC 2 cut(s) 168, 319
BsmI GAATGC 1 cut(s) 127
BsnI GGCC 3 cut(s) 214, 337, 370
Bsp1286I GDGCHC 1 cut(s) 272
Bsp143I GATC 1 cut(s) 183
Bsp19I CCATGG 1 cut(s) 144
BspACI CCGC 6 cut(s) 98, 122, 149, 171, 252, 371
BspANI GGCC 3 cut(s) 214, 337, 370
BspCNI CTCAG 1 cut(s) 222
BspMI ACCTGC 1 cut(s) 316
BssECI CCNNGG 1 cut(s) 144
BssMI GATC 1 cut(s) 183
BssNI GRCGYC 1 cut(s) 285
BssT1I CCWWGG 1 cut(s) 144
Bst4CI ACNGT 3 cut(s) 179, 235, 260
BstACI GRCGYC 1 cut(s) 285
BstC8I GCNNGC 1 cut(s) 309
BstDEI CTNAG 1 cut(s) 209
BstDSI CCRYGG 1 cut(s) 144
BstEII GGTNACC 1 cut(s) 53
BstF5I GGATG 3 cut(s) 112, 272, 366
BstKTI GATC 1 cut(s) 186
BstMAI GTCTC 2 cut(s) 168, 319
BstMBI GATC 1 cut(s) 183
BstMCI CGRYCG 1 cut(s) 186
BstNSI RCATGY 1 cut(s) 20
BstPI GGTNACC 1 cut(s) 53
BstSCI CCNGG 1 cut(s) 69
BstV1I GCAGC 1 cut(s) 106
BstV2I GAAGAC 1 cut(s) 159
Bsu36I CCTNAGG 1 cut(s) 209
BsuI GTATCC 1 cut(s) 248
BsuRI GGCC 3 cut(s) 214, 337, 370
BtgI CCRYGG 1 cut(s) 144
BtsCI GGATG 3 cut(s) 112, 272, 366
BtsI GCAGTG 1 cut(s) 357
BtsIMutI CAGTG 1 cut(s) 357
BveI ACCTGC 1 cut(s) 316
Cac8I GCNNGC 1 cut(s) 309
Csp6I GTAC 2 cut(s) 28, 136
CviAII CATG 2 cut(s) 17, 145
CviJI RGCY 5 cut(s) 159, 214, 270, 337, 370
CviKI_1 RGCY 5 cut(s) 159, 214, 270, 337, 370
CviQI GTAC 2 cut(s) 28, 136
DdeI CTNAG 1 cut(s) 209
DpnI GATC 1 cut(s) 185
DpnII GATC 1 cut(s) 183
EaeI YGGCCR 1 cut(s) 368
EciI GGCGGA 3 cut(s) 113, 164, 186
Eco130I CCWWGG 1 cut(s) 144
Eco24I GRGCYC 1 cut(s) 272
Eco81I CCTNAGG 1 cut(s) 209
Eco91I GGTNACC 1 cut(s) 53
EcoO65I GGTNACC 1 cut(s) 53
EcoT14I CCWWGG 1 cut(s) 144
EcoT38I GRGCYC 1 cut(s) 272
ErhI CCWWGG 1 cut(s) 144
FaeI CATG 2 cut(s) 20, 148
FaiI YATR 4 cut(s) 18, 51, 146, 379
FatI CATG 2 cut(s) 16, 144
Fnu4HI GCNGC 2 cut(s) 120, 371
FokI GGATG 3 cut(s) 119, 259, 373
FriOI GRGCYC 1 cut(s) 272
Fsp4HI GCNGC 2 cut(s) 120, 371
GluI GCNGC 2 cut(s) 120, 371
GsuI CTGGAG 1 cut(s) 280
HaeIII GGCC 3 cut(s) 214, 337, 370
HapII CCGG 3 cut(s) 71, 85, 215
Hin1I GRCGYC 1 cut(s) 285
Hin1II CATG 2 cut(s) 20, 148
HinfI GANTC 3 cut(s) 114, 278, 293
HpaII CCGG 3 cut(s) 71, 85, 215
HphI GGTGA 4 cut(s) 65, 88, 191, 280
Hpy166II GTNNAC 1 cut(s) 93
Hpy188I TCNGA 2 cut(s) 277, 283
Hpy188III TCNNGA 1 cut(s) 44
Hpy8I GTNNAC 1 cut(s) 93
Hpy99I CGWCG 2 cut(s) 235, 322
HpyCH4III ACNGT 3 cut(s) 179, 235, 260
HpyCH4IV ACGT 3 cut(s) 26, 89, 285
HpyCH4V TGCA 3 cut(s) 20, 311, 325
HpyF3I CTNAG 1 cut(s) 209
HpySE526I ACGT 3 cut(s) 26, 89, 285
Hsp92I GRCGYC 1 cut(s) 285
Hsp92II CATG 2 cut(s) 20, 148
Kzo9I GATC 1 cut(s) 183
LmnI GCTCC 2 cut(s) 124, 190
LpnPI CCDG 7 cut(s) 84, 98, 196, 228, 310, 311, 319
Lsp1109I GCAGC 1 cut(s) 106
LweI GCATC 1 cut(s) 202
MaeII ACGT 3 cut(s) 26, 89, 285
MaeIII GTNAC 3 cut(s) 7, 53, 286
MalI GATC 1 cut(s) 185
MboI GATC 1 cut(s) 183
MboII GAAGA 2 cut(s) 164, 232
MhlI GDGCHC 1 cut(s) 272
MlyI GAGTC 1 cut(s) 287
MmeI TCCRAC 1 cut(s) 287
MnlI CCTC 6 cut(s) 67, 94, 97, 181, 218, 351
MspI CCGG 3 cut(s) 71, 85, 215
MspR9I CCNGG 1 cut(s) 71
Mva1269I GAATGC 1 cut(s) 127
NciI CCSGG 1 cut(s) 71
NcoI CCATGG 1 cut(s) 144
NdeII GATC 1 cut(s) 183
NlaIII CATG 2 cut(s) 20, 148
NmuCI GTSAC 3 cut(s) 7, 53, 286
NspI RCATGY 1 cut(s) 20
PaqCI CACCTGC 1 cut(s) 316
PctI GAATGC 1 cut(s) 127
PfeI GAWTC 2 cut(s) 114, 278
PkrI GCNGC 2 cut(s) 121, 372
Ple19I CGATCG 1 cut(s) 186
PleI GAGTC 1 cut(s) 287
PpsI GAGTC 1 cut(s) 287
PspEI GGTNACC 1 cut(s) 53
PvuI CGATCG 1 cut(s) 186
RsaI GTAC 2 cut(s) 29, 137
RsaNI GTAC 2 cut(s) 28, 136
SatI GCNGC 2 cut(s) 120, 371
Sau3AI GATC 1 cut(s) 183
ScaI AGTACT 1 cut(s) 137
SchI GAGTC 1 cut(s) 287
ScrFI CCNGG 1 cut(s) 71
SduI GDGCHC 1 cut(s) 272
SetI ASST 6 cut(s) 29, 78, 92, 210, 288, 330
SfaNI GCATC 1 cut(s) 202
SsiI CCGC 6 cut(s) 98, 122, 149, 171, 252, 371
StyD4I CCNGG 1 cut(s) 69
StyI CCWWGG 1 cut(s) 144
TaaI ACNGT 3 cut(s) 179, 235, 260
TaiI ACGT 3 cut(s) 29, 92, 288
TaqI TCGA 2 cut(s) 182, 186
TatI WGTACW 1 cut(s) 135
TauI GCSGC 1 cut(s) 373
TfiI GAWTC 2 cut(s) 114, 278
TscAI CASTG 1 cut(s) 357
TseFI GTSAC 3 cut(s) 7, 53, 286
TseI GCWGC 1 cut(s) 119
Tsp45I GTSAC 3 cut(s) 7, 53, 286
TspDTI ATGAA 1 cut(s) 151
TspRI CASTG 1 cut(s) 357
XceI RCATGY 1 cut(s) 20
ZraI GACGTC 1 cut(s) 286
ZrmI AGTACT 1 cut(s) 137
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.