Rh2AG461000
MYB Family

transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2A
OG0019058
Physical Location & Seq
Reverse (-)
67842845 .. 67843186
342 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2AG461000.1

Sequence Viewer

Length: 342 bp
ATGGTCGGAGGCATTACCGGCCTCTGGGAAGCTTATATCGAAGGATCGAGAATCGTCGTTTTGGACACTTTTCTTCTCTGGTACGGGTTCAACCCGGGGGTGAAGCACCGGGCGTTCTTGGCGGAGGAGGACGAGAGAATTGCCGCAGCGCATTCCAAGTACTCGTCCATGGTGGAAGACGGCTTCGTCGGCAGCGGAGGCTGTTTGATTGAGGAGCATCATCACCACCACCTCAGATCGGAGAAGAAATCGGCGATGGTTTCGGTGTTTGGCCACGAATACAGTCCAACGAGCGCATCCGTATCTGACGTCAGCGACTCCGGCGCGGTGCCTGCAGTCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-binding

Protein Analysis

113

Amino Acids

12.25

Weight (kDa)

5.5

Isoelectric Point (pI)

47.23

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0019058)

Species Orthologous Gene IDs
rosa_laevigata RLG00000009589 RLG00000018158
rosa_multiflora Rmu_sc0005615.1_g000004
rosa_samantha Rh1AG161200 Rh2AG461000 Rh2BG474600 Rh2DG483300 Rh5DG176400 Rh7CG048000

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 185
AatII GACGTC 1 cut(s) 312
AccB1I GGYRCC 1 cut(s) 328
AccII CGCG 1 cut(s) 326
AciI CCGC 4 cut(s) 122, 144, 195, 326
AclWI GGATC 1 cut(s) 52
AcoI YGGCCR 1 cut(s) 271
AcyI GRCGYC 1 cut(s) 309
AfaI GTAC 2 cut(s) 83, 161
AfiI CCNNNNNNNGG 2 cut(s) 24, 238
AgsI TTSAA 1 cut(s) 91
AluBI AGCT 1 cut(s) 32
AluI AGCT 1 cut(s) 32
AlwI GGATC 1 cut(s) 52
Ama87I CYCGRG 1 cut(s) 94
AoxI GGCC 2 cut(s) 19, 271
ApeKI GCWGC 2 cut(s) 146, 192
AspLEI GCGC 3 cut(s) 151, 296, 326
AsuC2I CCSGG 3 cut(s) 95, 96, 110
AsuHPI GGTGA 2 cut(s) 112, 215
AvaI CYCGRG 1 cut(s) 94
BalI TGGCCA 1 cut(s) 273
BanI GGYRCC 1 cut(s) 328
BbsI GAAGAC 1 cut(s) 183
BbvI GCAGC 2 cut(s) 158, 204
BccI CCATC 1 cut(s) 250
BceAI ACGGC 1 cut(s) 196
BcgI CGANNNNNNTGC 2 cut(s) 122, 156
BcnI CCSGG 3 cut(s) 95, 96, 110
BfaI CTAG 1 cut(s) 340
BfmI CTRYAG 1 cut(s) 333
BisI GCNGC 3 cut(s) 144, 147, 193
BlsI GCNGC 3 cut(s) 145, 148, 194
BmcAI AGTACT 1 cut(s) 161
Bme1390I CCNGG 3 cut(s) 95, 96, 110
BmeT110I CYCGRG 1 cut(s) 94
BmiI GGNNCC 1 cut(s) 330
BmrFI CCNGG 3 cut(s) 95, 96, 110
BmsI GCATC 2 cut(s) 226, 305
BpiI GAAGAC 1 cut(s) 183
BpuMI CCSGG 3 cut(s) 95, 96, 110
BsaHI GRCGYC 1 cut(s) 309
BsaJI CCNNGG 3 cut(s) 94, 95, 168
Bsc4I CCNNNNNNNGG 2 cut(s) 24, 238
Bse118I RCCGGY 1 cut(s) 17
BseDI CCNNGG 3 cut(s) 94, 95, 168
BseGI GGATG 1 cut(s) 296
BseLI CCNNNNNNNGG 2 cut(s) 24, 238
BseMII CTCAG 1 cut(s) 247
BseRI GAGGAG 2 cut(s) 140, 227
BseXI GCAGC 2 cut(s) 158, 204
Bsh1236I CGCG 1 cut(s) 326
BshFI GGCC 2 cut(s) 21, 273
BshNI GGYRCC 1 cut(s) 328
BsiHKCI CYCGRG 1 cut(s) 94
BsiSI CCGG 4 cut(s) 18, 95, 109, 321
BslI CCNNNNNNNGG 2 cut(s) 24, 238
BsmI GAATGC 1 cut(s) 151
BsnI GGCC 2 cut(s) 21, 273
BsoBI CYCGRG 1 cut(s) 94
Bsp143I GATC 2 cut(s) 44, 236
Bsp19I CCATGG 1 cut(s) 168
BspACI CCGC 4 cut(s) 122, 144, 195, 326
BspANI GGCC 2 cut(s) 21, 273
BspCNI CTCAG 1 cut(s) 246
BspFNI CGCG 1 cut(s) 326
BspLI GGNNCC 1 cut(s) 330
BspMAI CTGCAG 1 cut(s) 337
BspPI GGATC 1 cut(s) 52
BspT107I GGYRCC 1 cut(s) 328
BsrFI RCCGGY 1 cut(s) 17
BssAI RCCGGY 1 cut(s) 17
BssECI CCNNGG 3 cut(s) 94, 95, 168
BssMI GATC 2 cut(s) 44, 236
BssNI GRCGYC 1 cut(s) 309
BssT1I CCWWGG 1 cut(s) 168
Bst4CI ACNGT 1 cut(s) 284
BstACI GRCGYC 1 cut(s) 309
BstC8I GCNNGC 1 cut(s) 333
BstDEI CTNAG 1 cut(s) 233
BstDSI CCRYGG 1 cut(s) 168
BstF5I GGATG 1 cut(s) 296
BstFNI CGCG 1 cut(s) 326
BstHHI GCGC 3 cut(s) 151, 296, 326
BstKTI GATC 2 cut(s) 47, 239
BstMBI GATC 2 cut(s) 44, 236
BstMWI GCNNNNNNNGC 6 cut(s) 18, 119, 189, 198, 321, 332
BstSCI CCNGG 3 cut(s) 93, 94, 108
BstSFI CTRYAG 1 cut(s) 333
BstUI CGCG 1 cut(s) 326
BstV1I GCAGC 2 cut(s) 158, 204
BstV2I GAAGAC 1 cut(s) 183
BsuRI GGCC 2 cut(s) 21, 273
BtgI CCRYGG 1 cut(s) 168
BtgZI GCGATG 1 cut(s) 269
BtsCI GGATG 1 cut(s) 296
Cac8I GCNNGC 1 cut(s) 333
CfoI GCGC 3 cut(s) 151, 296, 326
Cfr10I RCCGGY 1 cut(s) 17
Cfr9I CCCGGG 1 cut(s) 94
Csp6I GTAC 2 cut(s) 82, 160
CviAII CATG 1 cut(s) 169
CviJI RGCY 5 cut(s) 21, 32, 183, 201, 273
CviKI_1 RGCY 5 cut(s) 21, 32, 183, 201, 273
CviQI GTAC 2 cut(s) 82, 160
DdeI CTNAG 1 cut(s) 233
DpnI GATC 2 cut(s) 46, 238
DpnII GATC 2 cut(s) 44, 236
DrdI GACNNNNNNGTC 1 cut(s) 185
DseDI GACNNNNNNGTC 1 cut(s) 185
EaeI YGGCCR 1 cut(s) 271
EciI GGCGGA 1 cut(s) 137
Eco130I CCWWGG 1 cut(s) 168
Eco88I CYCGRG 1 cut(s) 94
EcoT14I CCWWGG 1 cut(s) 168
ErhI CCWWGG 1 cut(s) 168
FaeI CATG 1 cut(s) 172
FaiI YATR 2 cut(s) 36, 170
FatI CATG 1 cut(s) 168
Fnu4HI GCNGC 3 cut(s) 144, 147, 193
FokI GGATG 1 cut(s) 283
Fsp4HI GCNGC 3 cut(s) 144, 147, 193
FspBI CTAG 1 cut(s) 340
GlaI GCGC 3 cut(s) 150, 295, 325
GluI GCNGC 3 cut(s) 144, 147, 193
HaeIII GGCC 2 cut(s) 21, 273
HapII CCGG 4 cut(s) 18, 95, 109, 321
HhaI GCGC 3 cut(s) 151, 296, 326
Hin1I GRCGYC 1 cut(s) 309
Hin1II CATG 1 cut(s) 172
Hin6I GCGC 3 cut(s) 149, 294, 324
HinP1I GCGC 3 cut(s) 149, 294, 324
HindIII AAGCTT 1 cut(s) 30
HinfI GANTC 2 cut(s) 51, 317
HpaII CCGG 4 cut(s) 18, 95, 109, 321
HphI GGTGA 2 cut(s) 112, 215
Hpy188I TCNGA 4 cut(s) 8, 236, 241, 307
Hpy188III TCNNGA 1 cut(s) 48
Hpy99I CGWCG 2 cut(s) 59, 191
HpyAV CCTTC 1 cut(s) 35
HpyCH4III ACNGT 1 cut(s) 284
HpyCH4IV ACGT 1 cut(s) 309
HpyCH4V TGCA 1 cut(s) 335
HpyF10VI GCNNNNNNNGC 6 cut(s) 18, 119, 189, 198, 321, 332
HpyF3I CTNAG 1 cut(s) 233
HpySE526I ACGT 1 cut(s) 309
Hsp92I GRCGYC 1 cut(s) 309
Hsp92II CATG 1 cut(s) 172
HspAI GCGC 3 cut(s) 149, 294, 324
Kzo9I GATC 2 cut(s) 44, 236
LmnI GCTCC 1 cut(s) 214
LpnPI CCDG 6 cut(s) 10, 31, 64, 108, 122, 334
Lsp1109I GCAGC 2 cut(s) 158, 204
LweI GCATC 2 cut(s) 226, 305
MaeI CTAG 1 cut(s) 340
MaeII ACGT 1 cut(s) 309
MalI GATC 2 cut(s) 46, 238
MboI GATC 2 cut(s) 44, 236
MboII GAAGA 3 cut(s) 65, 188, 256
MlsI TGGCCA 1 cut(s) 273
MluCI AATT 1 cut(s) 138
MluNI TGGCCA 1 cut(s) 273
MlyI GAGTC 1 cut(s) 311
MmeI TCCRAC 1 cut(s) 311
MnlI CCTC 6 cut(s) 32, 118, 121, 191, 205, 242
Mox20I TGGCCA 1 cut(s) 273
MscI TGGCCA 1 cut(s) 273
Msp20I TGGCCA 1 cut(s) 273
MspA1I CMGCKG 1 cut(s) 195
MspI CCGG 4 cut(s) 18, 95, 109, 321
MspR9I CCNGG 3 cut(s) 95, 96, 110
Mva1269I GAATGC 1 cut(s) 151
MvnI CGCG 1 cut(s) 326
MwoI GCNNNNNNNGC 6 cut(s) 18, 119, 189, 198, 321, 332
NciI CCSGG 3 cut(s) 95, 96, 110
NcoI CCATGG 1 cut(s) 168
NdeII GATC 2 cut(s) 44, 236
NlaIII CATG 1 cut(s) 172
NlaIV GGNNCC 1 cut(s) 330
PctI GAATGC 1 cut(s) 151
PfeI GAWTC 1 cut(s) 51
PkrI GCNGC 3 cut(s) 145, 148, 194
PleI GAGTC 1 cut(s) 311
PpsI GAGTC 1 cut(s) 311
PspN4I GGNNCC 1 cut(s) 330
PstI CTGCAG 1 cut(s) 337
RsaI GTAC 2 cut(s) 83, 161
RsaNI GTAC 2 cut(s) 82, 160
SatI GCNGC 3 cut(s) 144, 147, 193
Sau3AI GATC 2 cut(s) 44, 236
ScaI AGTACT 1 cut(s) 161
SchI GAGTC 1 cut(s) 311
ScrFI CCNGG 3 cut(s) 95, 96, 110
SetI ASST 3 cut(s) 34, 234, 312
SfaNI GCATC 2 cut(s) 226, 305
SfcI CTRYAG 1 cut(s) 333
SmaI CCCGGG 1 cut(s) 96
Sse9I AATT 1 cut(s) 138
SsiI CCGC 4 cut(s) 122, 144, 195, 326
SspMI CTAG 1 cut(s) 340
StyD4I CCNGG 3 cut(s) 93, 94, 108
StyI CCWWGG 1 cut(s) 168
TaaI ACNGT 1 cut(s) 284
TaiI ACGT 1 cut(s) 312
TaqI TCGA 2 cut(s) 39, 47
TasI AATT 1 cut(s) 138
TatI WGTACW 1 cut(s) 159
TauI GCSGC 1 cut(s) 146
TfiI GAWTC 1 cut(s) 51
TseI GCWGC 2 cut(s) 146, 192
TspGWI ACGGA 1 cut(s) 289
TspMI CCCGGG 1 cut(s) 94
XmaI CCCGGG 1 cut(s) 94
XspI CTAG 1 cut(s) 340
ZraI GACGTC 1 cut(s) 310
ZrmI AGTACT 1 cut(s) 161
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.