Rmu_sc0005615.1_g000004
MYB Family

transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0005615.1
OG0019058
Physical Location & Seq
Forward (+)
9188 .. 9800
613 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0005615.1_g000004.1.cds

Sequence Viewer

Length: 516 bp
atgggtattacccatgatacccattacctaatttatatttcgtgggtatttccatacccacccattggagtcatcgacttcgtcggctccggcatcatccccatagtcagaggcatcgccggcctctgggaagcttatatcgaaggtccgagaatcgtcgttttggacacttttcttttctggttcgggtggtacgggttcaacccggaggtgaagcaccggacgtttacagcggaggaggacgagagaatcgctgcggcgcattccaggtactcgtccatggcagaagatggcttcgtcggcggcggaggctgttcgatcgaggagcatcatcaccaccacctcaagcctgagaagaaatcggcgacggtttcggtgtttggcagcagatacagtccgacgagcccatccaaatccgacgtcatcgactccggcgtggtgcctgcagtctcatcggcgcaggtgttcaggccagtggcaagagcagtgttgaggacggagtcgccgccgatataa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-binding

Protein Analysis

171

Amino Acids

18.87

Weight (kDa)

6.11

Isoelectric Point (pI)

47.33

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0019058)

Species Orthologous Gene IDs
rosa_laevigata RLG00000009589 RLG00000018158
rosa_multiflora Rmu_sc0005615.1_g000004
rosa_samantha Rh1AG161200 Rh2AG461000 Rh2BG474600 Rh2DG483300 Rh5DG176400 Rh7CG048000

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 451
AatII GACGTC 1 cut(s) 423
Acc36I ACCTGC 1 cut(s) 451
AccB1I GGYRCC 1 cut(s) 439
AccB7I CCANNNNNTGG 1 cut(s) 65
AciI CCGC 5 cut(s) 233, 257, 303, 306, 506
AcyI GRCGYC 1 cut(s) 420
AfaI GTAC 2 cut(s) 194, 272
AfiI CCNNNNNNNGG 2 cut(s) 65, 126
AgsI TTSAA 1 cut(s) 202
AjnI CCWGG 1 cut(s) 266
AluBI AGCT 1 cut(s) 134
AluI AGCT 1 cut(s) 134
Alw26I GTCTC 1 cut(s) 454
AoxI GGCC 2 cut(s) 121, 470
ApeKI GCWGC 2 cut(s) 254, 384
ArsI GACNNNNNNTTYG 2 cut(s) 405, 437
AspLEI GCGC 2 cut(s) 262, 460
AspS9I GGNCC 1 cut(s) 146
AsuC2I CCSGG 1 cut(s) 206
AsuHPI GGTGA 2 cut(s) 223, 326
AvaII GGWCC 1 cut(s) 146
BanI GGYRCC 1 cut(s) 439
BanII GRGCYC 1 cut(s) 407
BbvI GCAGC 2 cut(s) 241, 396
BccI CCATC 2 cut(s) 284, 415
BcgI CGANNNNNNTGC 2 cut(s) 435, 469
BciT130I CCWGG 1 cut(s) 268
BcnI CCSGG 1 cut(s) 206
BcoDI GTCTC 1 cut(s) 454
BfmI CTRYAG 1 cut(s) 444
BfuAI ACCTGC 1 cut(s) 451
BisI GCNGC 5 cut(s) 255, 258, 304, 385, 506
BlsI GCNGC 5 cut(s) 256, 259, 305, 386, 507
Bme1390I CCNGG 2 cut(s) 206, 268
Bme18I GGWCC 1 cut(s) 146
BmgT120I GGNCC 1 cut(s) 146
BmiI GGNNCC 2 cut(s) 88, 441
BmrFI CCNGG 2 cut(s) 206, 268
BmsI GCATC 3 cut(s) 102, 123, 337
BpuEI CTTGAG 1 cut(s) 329
BpuMI CCSGG 1 cut(s) 206
BsaHI GRCGYC 1 cut(s) 420
BsaJI CCNNGG 1 cut(s) 279
BsaWI WCCGGW 1 cut(s) 219
Bsc4I CCNNNNNNNGG 2 cut(s) 65, 126
Bse118I RCCGGY 1 cut(s) 119
Bse1I ACTGG 1 cut(s) 473
BseBI CCWGG 1 cut(s) 268
BseDI CCNNGG 1 cut(s) 279
BseGI GGATG 2 cut(s) 96, 407
BseLI CCNNNNNNNGG 2 cut(s) 65, 126
BseMII CTCAG 1 cut(s) 342
BseNI ACTGG 1 cut(s) 473
BseRI GAGGAG 2 cut(s) 251, 338
BseXI GCAGC 2 cut(s) 241, 396
Bsh1285I CGRYCG 1 cut(s) 321
BshFI GGCC 2 cut(s) 123, 472
BshNI GGYRCC 1 cut(s) 439
BsiEI CGRYCG 1 cut(s) 321
BsiSI CCGG 5 cut(s) 90, 120, 206, 220, 432
BslI CCNNNNNNNGG 2 cut(s) 65, 126
BsmAI GTCTC 1 cut(s) 454
BsmI GAATGC 1 cut(s) 262
BsnI GGCC 2 cut(s) 123, 472
Bsp1286I GDGCHC 1 cut(s) 407
Bsp143I GATC 1 cut(s) 318
Bsp19I CCATGG 1 cut(s) 279
BspACI CCGC 5 cut(s) 233, 257, 303, 306, 506
BspANI GGCC 2 cut(s) 123, 472
BspCNI CTCAG 1 cut(s) 343
BspLI GGNNCC 2 cut(s) 88, 441
BspMAI CTGCAG 1 cut(s) 448
BspMI ACCTGC 1 cut(s) 451
BspT107I GGYRCC 1 cut(s) 439
BsrFI RCCGGY 1 cut(s) 119
BsrI ACTGG 1 cut(s) 473
BssAI RCCGGY 1 cut(s) 119
BssECI CCNNGG 1 cut(s) 279
BssMI GATC 1 cut(s) 318
BssNI GRCGYC 1 cut(s) 420
BssT1I CCWWGG 1 cut(s) 279
Bst2UI CCWGG 1 cut(s) 268
Bst4CI ACNGT 2 cut(s) 370, 395
BstACI GRCGYC 1 cut(s) 420
BstC8I GCNNGC 2 cut(s) 121, 444
BstDEI CTNAG 1 cut(s) 351
BstDSI CCRYGG 1 cut(s) 279
BstF5I GGATG 2 cut(s) 96, 407
BstHHI GCGC 2 cut(s) 262, 460
BstKTI GATC 1 cut(s) 321
BstMAI GTCTC 1 cut(s) 454
BstMBI GATC 1 cut(s) 318
BstMCI CGRYCG 1 cut(s) 321
BstMWI GCNNNNNNNGC 3 cut(s) 120, 300, 309
BstNI CCWGG 1 cut(s) 268
BstSCI CCNGG 2 cut(s) 204, 266
BstSFI CTRYAG 1 cut(s) 444
BstV1I GCAGC 2 cut(s) 241, 396
BsuRI GGCC 2 cut(s) 123, 472
BtgI CCRYGG 1 cut(s) 279
BtgZI GCGATG 1 cut(s) 100
BtsCI GGATG 2 cut(s) 96, 407
BtsI GCAGTG 1 cut(s) 492
BtsIMutI CAGTG 2 cut(s) 480, 492
BveI ACCTGC 1 cut(s) 451
Cac8I GCNNGC 2 cut(s) 121, 444
CfoI GCGC 2 cut(s) 262, 460
Cfr10I RCCGGY 1 cut(s) 119
Cfr13I GGNCC 1 cut(s) 146
Csp6I GTAC 2 cut(s) 193, 271
CviAII CATG 2 cut(s) 14, 280
CviJI RGCY 8 cut(s) 87, 123, 134, 294, 312, 349, 405, 472
CviKI_1 RGCY 8 cut(s) 87, 123, 134, 294, 312, 349, 405, 472
CviQI GTAC 2 cut(s) 193, 271
DdeI CTNAG 1 cut(s) 351
DpnI GATC 1 cut(s) 320
DpnII GATC 1 cut(s) 318
EciI GGCGGA 1 cut(s) 321
Eco130I CCWWGG 1 cut(s) 279
Eco24I GRGCYC 1 cut(s) 407
Eco47I GGWCC 1 cut(s) 146
EcoRII CCWGG 1 cut(s) 266
EcoT14I CCWWGG 1 cut(s) 279
EcoT38I GRGCYC 1 cut(s) 407
ErhI CCWWGG 1 cut(s) 279
FaeI CATG 2 cut(s) 17, 283
FaiI YATR 7 cut(s) 15, 36, 55, 104, 138, 281, 514
FatI CATG 2 cut(s) 13, 279
Fnu4HI GCNGC 5 cut(s) 255, 258, 304, 385, 506
FokI GGATG 2 cut(s) 83, 394
FriOI GRGCYC 1 cut(s) 407
Fsp4HI GCNGC 5 cut(s) 255, 258, 304, 385, 506
GlaI GCGC 2 cut(s) 261, 459
GluI GCNGC 5 cut(s) 255, 258, 304, 385, 506
HaeIII GGCC 2 cut(s) 123, 472
HapII CCGG 5 cut(s) 90, 120, 206, 220, 432
HhaI GCGC 2 cut(s) 262, 460
Hin1I GRCGYC 1 cut(s) 420
Hin1II CATG 2 cut(s) 17, 283
Hin6I GCGC 2 cut(s) 260, 458
HinP1I GCGC 2 cut(s) 260, 458
HindIII AAGCTT 1 cut(s) 132
HinfI GANTC 5 cut(s) 69, 153, 249, 428, 500
HpaII CCGG 5 cut(s) 90, 120, 206, 220, 432
HphI GGTGA 2 cut(s) 223, 326
Hpy166II GTNNAC 1 cut(s) 228
Hpy188I TCNGA 4 cut(s) 110, 150, 399, 418
Hpy8I GTNNAC 1 cut(s) 228
Hpy99I CGWCG 6 cut(s) 86, 161, 302, 370, 403, 422
HpyAV CCTTC 1 cut(s) 137
HpyCH4III ACNGT 2 cut(s) 370, 395
HpyCH4IV ACGT 2 cut(s) 224, 420
HpyCH4V TGCA 1 cut(s) 446
HpyF10VI GCNNNNNNNGC 3 cut(s) 120, 300, 309
HpyF3I CTNAG 1 cut(s) 351
HpySE526I ACGT 2 cut(s) 224, 420
Hsp92I GRCGYC 1 cut(s) 420
Hsp92II CATG 2 cut(s) 17, 283
HspAI GCGC 2 cut(s) 260, 458
KroI GCCGGC 1 cut(s) 119
KroNI GCCGGC 1 cut(s) 121
Kzo9I GATC 1 cut(s) 318
LmnI GCTCC 2 cut(s) 92, 325
Lsp1109I GCAGC 2 cut(s) 241, 396
LweI GCATC 3 cut(s) 102, 123, 337
MaeII ACGT 2 cut(s) 224, 420
MalI GATC 1 cut(s) 320
MboI GATC 1 cut(s) 318
MboII GAAGA 2 cut(s) 299, 367
MhlI GDGCHC 1 cut(s) 407
MluCI AATT 1 cut(s) 30
MlyI GAGTC 3 cut(s) 78, 422, 509
MmeI TCCRAC 2 cut(s) 422, 441
MnlI CCTC 9 cut(s) 104, 134, 202, 229, 232, 302, 316, 353, 486
MroNI GCCGGC 1 cut(s) 119
MspA1I CMGCKG 1 cut(s) 233
MspI CCGG 5 cut(s) 90, 120, 206, 220, 432
MspR9I CCNGG 2 cut(s) 206, 268
Mva1269I GAATGC 1 cut(s) 262
MvaI CCWGG 1 cut(s) 268
MwoI GCNNNNNNNGC 3 cut(s) 120, 300, 309
NaeI GCCGGC 1 cut(s) 121
NciI CCSGG 1 cut(s) 206
NcoI CCATGG 1 cut(s) 279
NdeII GATC 1 cut(s) 318
NgoMIV GCCGGC 1 cut(s) 119
NlaIII CATG 2 cut(s) 17, 283
NlaIV GGNNCC 2 cut(s) 88, 441
PaqCI CACCTGC 1 cut(s) 451
PcsI WCGNNNNNNNCGW 1 cut(s) 432
PctI GAATGC 1 cut(s) 262
PdiI GCCGGC 1 cut(s) 121
PfeI GAWTC 2 cut(s) 153, 249
PflFI GACNNNGTC 2 cut(s) 80, 499
PflMI CCANNNNNTGG 1 cut(s) 65
PkrI GCNGC 5 cut(s) 256, 259, 305, 386, 507
Ple19I CGATCG 1 cut(s) 321
PleI GAGTC 3 cut(s) 77, 422, 508
PpsI GAGTC 3 cut(s) 77, 422, 508
Psp6I CCWGG 1 cut(s) 266
PspGI CCWGG 1 cut(s) 266
PspN4I GGNNCC 2 cut(s) 88, 441
PspPI GGNCC 1 cut(s) 146
PstI CTGCAG 1 cut(s) 448
PsyI GACNNNGTC 2 cut(s) 80, 499
PvuI CGATCG 1 cut(s) 321
RsaI GTAC 2 cut(s) 194, 272
RsaNI GTAC 2 cut(s) 193, 271
SatI GCNGC 5 cut(s) 255, 258, 304, 385, 506
Sau3AI GATC 1 cut(s) 318
Sau96I GGNCC 1 cut(s) 146
SchI GAGTC 3 cut(s) 78, 422, 509
ScrFI CCNGG 2 cut(s) 206, 268
SduI GDGCHC 1 cut(s) 407
SetI ASST 9 cut(s) 30, 136, 148, 213, 227, 272, 345, 423, 465
SfaNI GCATC 3 cut(s) 102, 123, 337
SfcI CTRYAG 1 cut(s) 444
SinI GGWCC 1 cut(s) 146
SmlI CTYRAG 1 cut(s) 344
SmoI CTYRAG 1 cut(s) 344
Sse9I AATT 1 cut(s) 30
SsiI CCGC 5 cut(s) 233, 257, 303, 306, 506
StyD4I CCNGG 2 cut(s) 204, 266
StyI CCWWGG 1 cut(s) 279
TaaI ACNGT 2 cut(s) 370, 395
TaiI ACGT 2 cut(s) 227, 423
TaqI TCGA 5 cut(s) 75, 141, 317, 321, 426
TasI AATT 1 cut(s) 30
TauI GCSGC 3 cut(s) 260, 306, 508
TfiI GAWTC 2 cut(s) 153, 249
TscAI CASTG 2 cut(s) 480, 492
TseI GCWGC 2 cut(s) 254, 384
TspGWI ACGGA 1 cut(s) 512
TspRI CASTG 2 cut(s) 480, 492
Tth111I GACNNNGTC 2 cut(s) 80, 499
Van91I CCANNNNNTGG 1 cut(s) 65
VpaK11BI GGWCC 1 cut(s) 146
ZraI GACGTC 1 cut(s) 421
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.