Rh2DG110800

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2D
OG0017215
Physical Location & Seq
Forward (+)
9048471 .. 9049926
1456 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2DG110800.1

Sequence Viewer

Length: 492 bp
ATGACTACATCCATGCCTATTCTCCAAAGAATGGACCGTCTCAATCGTTTGCTGCAGTTTCTGGAAGAGAAGCATTGGTTGTCATCCAAGTGTTCTTTGAGTTCTAGTACTGCTCCCGCCTGCGAAAGCAGTGAACCTGCCCAAGATCGTGTGTCCTACAAAACACTGTCATCTGCAATTGAAGAAGTACATTGTAAAGGCACGCTGATGGAGCGAGTAGCTATTCTTGAGAGCCGGCTTTTACAGTTAAGCCATGAGATGGATTTAGAAAATGAATCAAGTTCTAGCTGCTCCACGATTCTGGTATCTGATCAGAAATTTGAGCAAGACAAGCAAGATTCTCTAATAAATGGGGGGTATAAGTCTCCAAAAGAGTGTGTAAGAAAGCCGAAGGGTTGGAGGAAAGCTGGGAGAAGAAGAACAAGAAAAACAAGCATTGTCTCCATCATTCAGCTGAGAGAATGGCTTAGGTGGCCAAGAATGGCATGCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

163

Amino Acids

18.75

Weight (kDa)

9.25

Isoelectric Point (pI)

77.7

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017215)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g09770 FvH4_1g09770
malus_domestica MD15G1227100.v1.1
prunus_persica Prupe.7G188200_v2.0.a1
rosa_laevigata RLG00000016661
rosa_roxburghii Rroxscaffold_2G00145420
rosa_rugosa Rorug02G0059600
rosa_samantha Rh2AG107000 Rh2BG109400 Rh2CG111200 Rh2DG110800 Rh7BG189800
rosa_wichuraiana Rw2G008290

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 145
AccB7I CCANNNNNTGG 2 cut(s) 31, 259
AciI CCGC 1 cut(s) 117
AcoI YGGCCR 1 cut(s) 473
AcsI RAATTY 1 cut(s) 317
AfaI GTAC 2 cut(s) 109, 189
AfiI CCNNNNNNNGG 2 cut(s) 31, 259
AgsI TTSAA 1 cut(s) 182
AluBI AGCT 4 cut(s) 221, 288, 407, 454
AluI AGCT 4 cut(s) 221, 288, 407, 454
Alw26I GTCTC 3 cut(s) 44, 369, 445
AlwNI CAGNNNCTG 1 cut(s) 61
AoxI GGCC 1 cut(s) 473
ApeKI GCWGC 2 cut(s) 52, 288
ApoI RAATTY 1 cut(s) 317
AspS9I GGNCC 1 cut(s) 34
AvaII GGWCC 1 cut(s) 34
BalI TGGCCA 1 cut(s) 475
BbvI GCAGC 2 cut(s) 39, 275
BccI CCATC 3 cut(s) 202, 253, 452
BclI TGATCA 1 cut(s) 310
BcoDI GTCTC 3 cut(s) 44, 369, 445
BfaI CTAG 2 cut(s) 105, 285
BfmI CTRYAG 1 cut(s) 53
BfuAI ACCTGC 1 cut(s) 145
BisI GCNGC 2 cut(s) 53, 289
BlsI GCNGC 2 cut(s) 54, 290
BmcAI AGTACT 1 cut(s) 109
Bme18I GGWCC 1 cut(s) 34
BmgT120I GGNCC 1 cut(s) 34
Bpu10I CCTNAGC 1 cut(s) 467
BpuEI CTTGAG 1 cut(s) 248
Bsc4I CCNNNNNNNGG 2 cut(s) 31, 259
Bse118I RCCGGY 1 cut(s) 234
BseGI GGATG 2 cut(s) 8, 83
BseLI CCNNNNNNNGG 2 cut(s) 31, 259
BseMII CTCAG 1 cut(s) 446
BseXI GCAGC 2 cut(s) 39, 275
BseYI CCCAGC 1 cut(s) 407
BshFI GGCC 1 cut(s) 475
BsiSI CCGG 1 cut(s) 235
BslI CCNNNNNNNGG 2 cut(s) 31, 259
BsmAI GTCTC 3 cut(s) 44, 369, 445
BsmBI CGTCTC 1 cut(s) 44
BsnI GGCC 1 cut(s) 475
Bsp143I GATC 2 cut(s) 145, 310
BspACI CCGC 1 cut(s) 117
BspANI GGCC 1 cut(s) 475
BspCNI CTCAG 1 cut(s) 447
BspMAI CTGCAG 1 cut(s) 57
BspMI ACCTGC 1 cut(s) 145
BsrFI RCCGGY 1 cut(s) 234
BssAI RCCGGY 1 cut(s) 234
BssMI GATC 2 cut(s) 145, 310
Bst4CI ACNGT 3 cut(s) 38, 168, 246
Bst6I CTCTTC 1 cut(s) 60
BstC8I GCNNGC 4 cut(s) 121, 203, 236, 487
BstDEI CTNAG 2 cut(s) 455, 467
BstF5I GGATG 2 cut(s) 8, 83
BstKTI GATC 2 cut(s) 148, 313
BstMAI GTCTC 3 cut(s) 44, 369, 445
BstMBI GATC 2 cut(s) 145, 310
BstMWI GCNNNNNNNGC 3 cut(s) 211, 331, 472
BstNSI RCATGY 1 cut(s) 489
BstSFI CTRYAG 1 cut(s) 53
BstV1I GCAGC 2 cut(s) 39, 275
BstXI CCANNNNNNTGG 1 cut(s) 301
BsuRI GGCC 1 cut(s) 475
BtsCI GGATG 2 cut(s) 8, 83
BtsI GCAGTG 1 cut(s) 136
BtsIMutI CAGTG 2 cut(s) 136, 164
BveI ACCTGC 1 cut(s) 145
Cac8I GCNNGC 4 cut(s) 121, 203, 236, 487
CaiI CAGNNNCTG 1 cut(s) 61
Cfr10I RCCGGY 1 cut(s) 234
Cfr13I GGNCC 1 cut(s) 34
Csp6I GTAC 2 cut(s) 108, 188
CviAII CATG 3 cut(s) 13, 254, 486
CviQI GTAC 2 cut(s) 108, 188
DdeI CTNAG 2 cut(s) 455, 467
DpnI GATC 2 cut(s) 147, 312
DpnII GATC 2 cut(s) 145, 310
EaeI YGGCCR 1 cut(s) 473
Eam1104I CTCTTC 1 cut(s) 60
EarI CTCTTC 1 cut(s) 60
Eco47I GGWCC 1 cut(s) 34
Esp3I CGTCTC 1 cut(s) 44
FaeI CATG 3 cut(s) 16, 257, 489
FaiI YATR 4 cut(s) 14, 255, 360, 487
FatI CATG 3 cut(s) 12, 253, 485
FauI CCCGC 1 cut(s) 124
FbaI TGATCA 1 cut(s) 310
Fnu4HI GCNGC 2 cut(s) 53, 289
FokI GGATG 1 cut(s) 70
Fsp4HI GCNGC 2 cut(s) 53, 289
FspBI CTAG 2 cut(s) 105, 285
GluI GCNGC 2 cut(s) 53, 289
GsaI CCCAGC 1 cut(s) 411
HaeIII GGCC 1 cut(s) 475
HapII CCGG 1 cut(s) 235
Hin1II CATG 3 cut(s) 16, 257, 489
HinfI GANTC 3 cut(s) 275, 298, 338
HpaII CCGG 1 cut(s) 235
Hpy166II GTNNAC 1 cut(s) 134
Hpy188I TCNGA 2 cut(s) 310, 315
Hpy188III TCNNGA 2 cut(s) 62, 227
Hpy8I GTNNAC 1 cut(s) 134
HpyAV CCTTC 1 cut(s) 385
HpyCH4III ACNGT 3 cut(s) 38, 168, 246
HpyCH4V TGCA 2 cut(s) 55, 176
HpyF10VI GCNNNNNNNGC 3 cut(s) 211, 331, 472
HpyF3I CTNAG 2 cut(s) 455, 467
Hsp92II CATG 3 cut(s) 16, 257, 489
KroI GCCGGC 1 cut(s) 234
KroNI GCCGGC 1 cut(s) 236
Ksp22I TGATCA 1 cut(s) 310
Kzo9I GATC 2 cut(s) 145, 310
LmnI GCTCC 3 cut(s) 118, 211, 296
LpnPI CCDG 6 cut(s) 47, 133, 150, 248, 287, 393
Lsp1109I GCAGC 2 cut(s) 39, 275
MaeI CTAG 2 cut(s) 105, 285
MalI GATC 2 cut(s) 147, 312
MboI GATC 2 cut(s) 145, 310
MboII GAAGA 4 cut(s) 77, 194, 426, 429
MfeI CAATTG 1 cut(s) 177
MlsI TGGCCA 1 cut(s) 475
MluCI AATT 2 cut(s) 177, 317
MluNI TGGCCA 1 cut(s) 475
MmeI TCCRAC 1 cut(s) 377
MnlI CCTC 1 cut(s) 393
Mox20I TGGCCA 1 cut(s) 475
MroNI GCCGGC 1 cut(s) 234
MscI TGGCCA 1 cut(s) 475
MseI TTAA 1 cut(s) 248
MslI CAYNNNNRTG 2 cut(s) 88, 206
Msp20I TGGCCA 1 cut(s) 475
MspA1I CMGCKG 1 cut(s) 454
MspI CCGG 1 cut(s) 235
MunI CAATTG 1 cut(s) 177
MwoI GCNNNNNNNGC 3 cut(s) 211, 331, 472
NaeI GCCGGC 1 cut(s) 236
NdeII GATC 2 cut(s) 145, 310
NgoMIV GCCGGC 1 cut(s) 234
NlaIII CATG 3 cut(s) 16, 257, 489
NspI RCATGY 1 cut(s) 489
PaeI GCATGC 1 cut(s) 489
PdiI GCCGGC 1 cut(s) 236
PfeI GAWTC 3 cut(s) 275, 298, 338
PflMI CCANNNNNTGG 2 cut(s) 31, 259
PkrI GCNGC 2 cut(s) 54, 290
PspFI CCCAGC 1 cut(s) 407
PspPI GGNCC 1 cut(s) 34
PstI CTGCAG 1 cut(s) 57
PstNI CAGNNNCTG 1 cut(s) 61
PvuII CAGCTG 1 cut(s) 454
RsaI GTAC 2 cut(s) 109, 189
RsaNI GTAC 2 cut(s) 108, 188
RseI CAYNNNNRTG 2 cut(s) 88, 206
SaqAI TTAA 1 cut(s) 248
SatI GCNGC 2 cut(s) 53, 289
Sau3AI GATC 2 cut(s) 145, 310
Sau96I GGNCC 1 cut(s) 34
ScaI AGTACT 1 cut(s) 109
SetI ASST 6 cut(s) 139, 223, 290, 409, 456, 473
SfcI CTRYAG 1 cut(s) 53
SinI GGWCC 1 cut(s) 34
SmiMI CAYNNNNRTG 2 cut(s) 88, 206
SmlI CTYRAG 1 cut(s) 227
SmoI CTYRAG 1 cut(s) 227
SphI GCATGC 1 cut(s) 489
Sse9I AATT 2 cut(s) 177, 317
SsiI CCGC 1 cut(s) 117
SspMI CTAG 2 cut(s) 105, 285
TaaI ACNGT 3 cut(s) 38, 168, 246
TasI AATT 2 cut(s) 177, 317
TatI WGTACW 2 cut(s) 107, 187
TfiI GAWTC 3 cut(s) 275, 298, 338
Tru1I TTAA 1 cut(s) 248
Tru9I TTAA 1 cut(s) 248
TscAI CASTG 2 cut(s) 136, 171
TseI GCWGC 2 cut(s) 52, 288
TspDTI ATGAA 1 cut(s) 288
TspRI CASTG 2 cut(s) 136, 171
Van91I CCANNNNNTGG 2 cut(s) 31, 259
VpaK11BI GGWCC 1 cut(s) 34
XapI RAATTY 1 cut(s) 317
XceI RCATGY 1 cut(s) 489
XspI CTAG 2 cut(s) 105, 285
ZrmI AGTACT 1 cut(s) 109
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.