Rh2AG107000

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2A
OG0017215
Physical Location & Seq
Forward (+)
9399875 .. 9401145
1271 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2AG107000.1

Sequence Viewer

Length: 456 bp
ATGTTGATGATGCAGCTGCAGTTTCTGGAAGAGAAGCATTGGTTGTCATCCAAGTGTTCTTTGAGTTCTAGTACTGCTCCCGCCTGCGAAAGCAGTGAACCTGCCCAAGATCGTGTGTCCTACAAAACACTGTCATCTGCAATTGAAGAAGTACATTGTAAAGGCACGCTGATGGAGCGAGTAGCTATTCTTGAGAGCCGGGTTTTACAGTTAAGCCATGAGATGGATTTAGAAAATGAATCAAGTTCTAGCTGTTCCACGATTCTGGTATCTGATCAGAAATTTGAGCAAGACAAGCAAGATTCTCTAATAAATGGGGGGTATAAGTCTCCAAAAGAGTGTGTAAGAAAGCCAAAGGGTTGGAGGAAAGCTGGGAGAAGAAGAACAAGAAAAACAAGCATTGTCTCCACCATTCAGCTGAGAGAATGGCTTAGGTGGCCAAGAATGGGATGCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

151

Amino Acids

17.28

Weight (kDa)

8.96

Isoelectric Point (pI)

73.0

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017215)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g09770 FvH4_1g09770
malus_domestica MD15G1227100.v1.1
prunus_persica Prupe.7G188200_v2.0.a1
rosa_laevigata RLG00000016661
rosa_roxburghii Rroxscaffold_2G00145420
rosa_rugosa Rorug02G0059600
rosa_samantha Rh2AG107000 Rh2BG109400 Rh2CG111200 Rh2DG110800 Rh7BG189800
rosa_wichuraiana Rw2G008290

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 109
AccB7I CCANNNNNTGG 1 cut(s) 223
AciI CCGC 1 cut(s) 81
AcoI YGGCCR 1 cut(s) 437
AcsI RAATTY 1 cut(s) 281
AfaI GTAC 2 cut(s) 73, 153
AfiI CCNNNNNNNGG 2 cut(s) 223, 446
AgsI TTSAA 1 cut(s) 146
AluBI AGCT 5 cut(s) 16, 185, 252, 371, 418
AluI AGCT 5 cut(s) 16, 185, 252, 371, 418
Alw26I GTCTC 2 cut(s) 333, 409
AlwNI CAGNNNCTG 1 cut(s) 25
AoxI GGCC 1 cut(s) 437
ApeKI GCWGC 2 cut(s) 13, 16
ApoI RAATTY 1 cut(s) 281
AsuC2I CCSGG 1 cut(s) 200
BalI TGGCCA 1 cut(s) 439
BbvI GCAGC 2 cut(s) 3, 25
BccI CCATC 2 cut(s) 166, 217
BclI TGATCA 1 cut(s) 274
BcnI CCSGG 1 cut(s) 200
BcoDI GTCTC 2 cut(s) 333, 409
BfaI CTAG 2 cut(s) 69, 249
BfmI CTRYAG 1 cut(s) 17
BfuAI ACCTGC 1 cut(s) 109
BisI GCNGC 2 cut(s) 14, 17
BlsI GCNGC 2 cut(s) 15, 18
BmcAI AGTACT 1 cut(s) 73
Bme1390I CCNGG 1 cut(s) 200
BmrFI CCNGG 1 cut(s) 200
BmsI GCATC 1 cut(s) 440
Bpu10I CCTNAGC 1 cut(s) 431
BpuEI CTTGAG 1 cut(s) 212
BpuMI CCSGG 1 cut(s) 200
Bsc4I CCNNNNNNNGG 2 cut(s) 223, 446
BseGI GGATG 2 cut(s) 47, 455
BseLI CCNNNNNNNGG 2 cut(s) 223, 446
BseMII CTCAG 1 cut(s) 410
BseXI GCAGC 2 cut(s) 3, 25
BseYI CCCAGC 1 cut(s) 371
BshFI GGCC 1 cut(s) 439
BsiSI CCGG 1 cut(s) 199
BslI CCNNNNNNNGG 2 cut(s) 223, 446
BsmAI GTCTC 2 cut(s) 333, 409
BsnI GGCC 1 cut(s) 439
Bsp143I GATC 2 cut(s) 109, 274
BspACI CCGC 1 cut(s) 81
BspANI GGCC 1 cut(s) 439
BspCNI CTCAG 1 cut(s) 411
BspMAI CTGCAG 1 cut(s) 21
BspMI ACCTGC 1 cut(s) 109
BssMI GATC 2 cut(s) 109, 274
Bst4CI ACNGT 2 cut(s) 132, 210
Bst6I CTCTTC 1 cut(s) 24
BstC8I GCNNGC 2 cut(s) 85, 167
BstDEI CTNAG 2 cut(s) 419, 431
BstF5I GGATG 2 cut(s) 47, 455
BstKTI GATC 2 cut(s) 112, 277
BstMAI GTCTC 2 cut(s) 333, 409
BstMBI GATC 2 cut(s) 109, 274
BstMWI GCNNNNNNNGC 3 cut(s) 175, 295, 436
BstSCI CCNGG 1 cut(s) 198
BstSFI CTRYAG 1 cut(s) 17
BstV1I GCAGC 2 cut(s) 3, 25
BstXI CCANNNNNNTGG 2 cut(s) 265, 360
BsuRI GGCC 1 cut(s) 439
BtsCI GGATG 2 cut(s) 47, 455
BtsI GCAGTG 1 cut(s) 100
BtsIMutI CAGTG 2 cut(s) 100, 128
BveI ACCTGC 1 cut(s) 109
Cac8I GCNNGC 2 cut(s) 85, 167
CaiI CAGNNNCTG 1 cut(s) 25
Csp6I GTAC 2 cut(s) 72, 152
CviAII CATG 1 cut(s) 218
CviQI GTAC 2 cut(s) 72, 152
DdeI CTNAG 2 cut(s) 419, 431
DpnI GATC 2 cut(s) 111, 276
DpnII GATC 2 cut(s) 109, 274
EaeI YGGCCR 1 cut(s) 437
Eam1104I CTCTTC 1 cut(s) 24
EarI CTCTTC 1 cut(s) 24
FaeI CATG 1 cut(s) 221
FaiI YATR 2 cut(s) 219, 324
FatI CATG 1 cut(s) 217
FauI CCCGC 1 cut(s) 88
FbaI TGATCA 1 cut(s) 274
Fnu4HI GCNGC 2 cut(s) 14, 17
FokI GGATG 1 cut(s) 34
Fsp4HI GCNGC 2 cut(s) 14, 17
FspBI CTAG 2 cut(s) 69, 249
GluI GCNGC 2 cut(s) 14, 17
GsaI CCCAGC 1 cut(s) 375
HaeIII GGCC 1 cut(s) 439
HapII CCGG 1 cut(s) 199
Hin1II CATG 1 cut(s) 221
HinfI GANTC 3 cut(s) 239, 262, 302
HpaII CCGG 1 cut(s) 199
Hpy166II GTNNAC 1 cut(s) 98
Hpy188I TCNGA 2 cut(s) 274, 279
Hpy188III TCNNGA 2 cut(s) 26, 191
Hpy8I GTNNAC 1 cut(s) 98
HpyCH4III ACNGT 2 cut(s) 132, 210
HpyCH4V TGCA 3 cut(s) 13, 19, 140
HpyF10VI GCNNNNNNNGC 3 cut(s) 175, 295, 436
HpyF3I CTNAG 2 cut(s) 419, 431
Hsp92II CATG 1 cut(s) 221
Ksp22I TGATCA 1 cut(s) 274
Kzo9I GATC 2 cut(s) 109, 274
LmnI GCTCC 2 cut(s) 82, 175
LpnPI CCDG 6 cut(s) 11, 97, 114, 212, 251, 357
Lsp1109I GCAGC 2 cut(s) 3, 25
LweI GCATC 1 cut(s) 440
MaeI CTAG 2 cut(s) 69, 249
MalI GATC 2 cut(s) 111, 276
MboI GATC 2 cut(s) 109, 274
MboII GAAGA 4 cut(s) 41, 158, 390, 393
MfeI CAATTG 1 cut(s) 141
MlsI TGGCCA 1 cut(s) 439
MluCI AATT 2 cut(s) 141, 281
MluNI TGGCCA 1 cut(s) 439
MmeI TCCRAC 1 cut(s) 341
MnlI CCTC 1 cut(s) 357
Mox20I TGGCCA 1 cut(s) 439
MscI TGGCCA 1 cut(s) 439
MseI TTAA 1 cut(s) 212
MslI CAYNNNNRTG 2 cut(s) 52, 170
Msp20I TGGCCA 1 cut(s) 439
MspA1I CMGCKG 2 cut(s) 16, 418
MspI CCGG 1 cut(s) 199
MspR9I CCNGG 1 cut(s) 200
MunI CAATTG 1 cut(s) 141
MwoI GCNNNNNNNGC 3 cut(s) 175, 295, 436
NciI CCSGG 1 cut(s) 200
NdeII GATC 2 cut(s) 109, 274
NlaIII CATG 1 cut(s) 221
PfeI GAWTC 3 cut(s) 239, 262, 302
PflMI CCANNNNNTGG 1 cut(s) 223
PkrI GCNGC 2 cut(s) 15, 18
PspFI CCCAGC 1 cut(s) 371
PstI CTGCAG 1 cut(s) 21
PstNI CAGNNNCTG 1 cut(s) 25
PvuII CAGCTG 2 cut(s) 16, 418
RsaI GTAC 2 cut(s) 73, 153
RsaNI GTAC 2 cut(s) 72, 152
RseI CAYNNNNRTG 2 cut(s) 52, 170
SaqAI TTAA 1 cut(s) 212
SatI GCNGC 2 cut(s) 14, 17
Sau3AI GATC 2 cut(s) 109, 274
ScaI AGTACT 1 cut(s) 73
ScrFI CCNGG 1 cut(s) 200
SetI ASST 7 cut(s) 18, 103, 187, 254, 373, 420, 437
SfaNI GCATC 1 cut(s) 440
SfcI CTRYAG 1 cut(s) 17
SmiMI CAYNNNNRTG 2 cut(s) 52, 170
SmlI CTYRAG 1 cut(s) 191
SmoI CTYRAG 1 cut(s) 191
Sse9I AATT 2 cut(s) 141, 281
SsiI CCGC 1 cut(s) 81
SspMI CTAG 2 cut(s) 69, 249
StyD4I CCNGG 1 cut(s) 198
TaaI ACNGT 2 cut(s) 132, 210
TasI AATT 2 cut(s) 141, 281
TatI WGTACW 2 cut(s) 71, 151
TfiI GAWTC 3 cut(s) 239, 262, 302
Tru1I TTAA 1 cut(s) 212
Tru9I TTAA 1 cut(s) 212
TscAI CASTG 2 cut(s) 100, 135
TseI GCWGC 2 cut(s) 13, 16
TspDTI ATGAA 1 cut(s) 252
TspRI CASTG 2 cut(s) 100, 135
Van91I CCANNNNNTGG 1 cut(s) 223
XapI RAATTY 1 cut(s) 281
XspI CTAG 2 cut(s) 69, 249
ZrmI AGTACT 1 cut(s) 73
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.