Prupe.7G188200_v2.0.a1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp07
OG0017215
Physical Location & Seq
Reverse (-)
18114248 .. 18115884
1637 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.7G188200.1

Sequence Viewer

Length: 477 bp
ATGGACCAACATGAAGAGCAGGACATCAGTTCTCCCATGCCTATTCTCCGAAGACTGGATCGTCTCGATCGTTTGCTGCAATTCTTGGAACACAAGCATTGCTTGTCAGCAAGCCATTCTTCCAGCCCTGCCTGCAAAACCATGGAACCAGTACTAGAAGAAGACCAGCGTAAGACTCTGTCATCTGCCATTGAAGAAGCACATCAAAAGGGCACATTGATGGAGAGAGTAGCTGTTCTCGAAAACCGGGTATTACAGTTAAGCCATGAGACGGATGTAGAAAATGCATCAAGGTCTAGCTATTCCACCATTCTAGTATCTGAGGACAAGCAAGACCCTTACACAACTCAAGAGTGTTCTTCAAAAGCATGTGTAAGAAAGCCACAAGGTTCCAAGAAAGGCAGAAAAAGAAGAAACAATCTTGTCTCCATCATTCAGTTGAGAGAAAGGTTTAGGTGGGCTCGAATGGGATGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

159

Amino Acids

18.22

Weight (kDa)

8.64

Isoelectric Point (pI)

79.26

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017215)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g09770 FvH4_1g09770
malus_domestica MD15G1227100.v1.1
prunus_persica Prupe.7G188200_v2.0.a1
rosa_laevigata RLG00000016661
rosa_roxburghii Rroxscaffold_2G00145420
rosa_rugosa Rorug02G0059600
rosa_samantha Rh2AG107000 Rh2BG109400 Rh2CG111200 Rh2DG110800 Rh7BG189800
rosa_wichuraiana Rw2G008290

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 60
AclWI GGATC 1 cut(s) 66
AfaI GTAC 1 cut(s) 153
AfiI CCNNNNNNNGG 2 cut(s) 55, 271
AgsI TTSAA 2 cut(s) 194, 363
AluBI AGCT 2 cut(s) 233, 300
AluI AGCT 2 cut(s) 233, 300
Alw26I GTCTC 3 cut(s) 68, 263, 430
AlwI GGATC 1 cut(s) 66
ApeKI GCWGC 1 cut(s) 76
AspS9I GGNCC 1 cut(s) 4
AsuC2I CCSGG 1 cut(s) 248
AvaII GGWCC 1 cut(s) 4
BaeGI GKGCMC 1 cut(s) 215
BanII GRGCYC 1 cut(s) 463
BbsI GAAGAC 2 cut(s) 58, 168
BbvI GCAGC 1 cut(s) 63
BccI CCATC 2 cut(s) 214, 437
BcnI CCSGG 1 cut(s) 248
BcoDI GTCTC 3 cut(s) 68, 263, 430
BfaI CTAG 3 cut(s) 155, 297, 314
BisI GCNGC 1 cut(s) 77
BlsI GCNGC 1 cut(s) 78
BmcAI AGTACT 1 cut(s) 153
Bme1390I CCNGG 1 cut(s) 248
Bme18I GGWCC 1 cut(s) 4
BmgT120I GGNCC 1 cut(s) 4
BmiI GGNNCC 2 cut(s) 147, 391
BmrFI CCNGG 1 cut(s) 248
BmsI GCATC 1 cut(s) 296
BpiI GAAGAC 2 cut(s) 58, 168
BpuEI CTTGAG 1 cut(s) 333
BpuMI CCSGG 1 cut(s) 248
BsaJI CCNNGG 1 cut(s) 141
Bsc4I CCNNNNNNNGG 2 cut(s) 55, 271
Bse1I ACTGG 2 cut(s) 60, 149
Bse3DI GCAATG 1 cut(s) 97
BseDI CCNNGG 1 cut(s) 141
BseGI GGATG 2 cut(s) 280, 476
BseLI CCNNNNNNNGG 2 cut(s) 55, 271
BseMI GCAATG 1 cut(s) 97
BseMII CTCAG 1 cut(s) 312
BseNI ACTGG 2 cut(s) 60, 149
BseSI GKGCMC 1 cut(s) 215
BseXI GCAGC 1 cut(s) 63
Bsh1285I CGRYCG 1 cut(s) 70
BsiEI CGRYCG 1 cut(s) 70
BsiSI CCGG 1 cut(s) 247
BslI CCNNNNNNNGG 2 cut(s) 55, 271
BsmAI GTCTC 3 cut(s) 68, 263, 430
BsmBI CGTCTC 2 cut(s) 68, 263
Bsp1286I GDGCHC 2 cut(s) 215, 463
Bsp143I GATC 2 cut(s) 58, 67
Bsp19I CCATGG 1 cut(s) 141
BspCNI CTCAG 1 cut(s) 313
BspLI GGNNCC 2 cut(s) 147, 391
BspPI GGATC 1 cut(s) 66
BspQI GCTCTTC 1 cut(s) 9
BsrDI GCAATG 1 cut(s) 97
BsrI ACTGG 2 cut(s) 60, 149
BssECI CCNNGG 1 cut(s) 141
BssMI GATC 2 cut(s) 58, 67
BssT1I CCWWGG 1 cut(s) 141
Bst4CI ACNGT 1 cut(s) 258
Bst6I CTCTTC 1 cut(s) 9
BstC8I GCNNGC 2 cut(s) 112, 133
BstDEI CTNAG 1 cut(s) 321
BstDSI CCRYGG 1 cut(s) 141
BstF5I GGATG 2 cut(s) 280, 476
BstKTI GATC 2 cut(s) 61, 70
BstMAI GTCTC 3 cut(s) 68, 263, 430
BstMBI GATC 2 cut(s) 58, 67
BstMCI CGRYCG 1 cut(s) 70
BstMWI GCNNNNNNNGC 1 cut(s) 132
BstNSI RCATGY 1 cut(s) 372
BstSCI CCNGG 1 cut(s) 246
BstSLI GKGCMC 1 cut(s) 215
BstV1I GCAGC 1 cut(s) 63
BstV2I GAAGAC 2 cut(s) 58, 168
BtgI CCRYGG 1 cut(s) 141
BtsCI GGATG 2 cut(s) 280, 476
Cac8I GCNNGC 2 cut(s) 112, 133
Cfr13I GGNCC 1 cut(s) 4
Csp6I GTAC 1 cut(s) 152
CviAII CATG 5 cut(s) 11, 37, 142, 266, 369
CviJI RGCY 7 cut(s) 114, 126, 233, 264, 300, 382, 461
CviKI_1 RGCY 7 cut(s) 114, 126, 233, 264, 300, 382, 461
CviQI GTAC 1 cut(s) 152
DdeI CTNAG 1 cut(s) 321
DpnI GATC 2 cut(s) 60, 69
DpnII GATC 2 cut(s) 58, 67
DrdI GACNNNNNNGTC 1 cut(s) 60
DseDI GACNNNNNNGTC 1 cut(s) 60
Eam1104I CTCTTC 1 cut(s) 9
EarI CTCTTC 1 cut(s) 9
Eco130I CCWWGG 1 cut(s) 141
Eco24I GRGCYC 1 cut(s) 463
Eco47I GGWCC 1 cut(s) 4
EcoT14I CCWWGG 1 cut(s) 141
EcoT22I ATGCAT 1 cut(s) 289
EcoT38I GRGCYC 1 cut(s) 463
ErhI CCWWGG 1 cut(s) 141
Esp3I CGTCTC 2 cut(s) 68, 263
FaeI CATG 5 cut(s) 14, 40, 145, 269, 372
FaiI YATR 5 cut(s) 12, 38, 143, 267, 370
FalI AAGNNNNNCTT 4 cut(s) 86, 118, 103, 135
FatI CATG 5 cut(s) 10, 36, 141, 265, 368
Fnu4HI GCNGC 1 cut(s) 77
FokI GGATG 1 cut(s) 287
FriOI GRGCYC 1 cut(s) 463
Fsp4HI GCNGC 1 cut(s) 77
FspBI CTAG 3 cut(s) 155, 297, 314
GluI GCNGC 1 cut(s) 77
HapII CCGG 1 cut(s) 247
Hin1II CATG 5 cut(s) 14, 40, 145, 269, 372
HinfI GANTC 1 cut(s) 175
HpaII CCGG 1 cut(s) 247
Hpy188I TCNGA 2 cut(s) 50, 322
Hpy188III TCNNGA 3 cut(s) 65, 239, 350
HpyCH4III ACNGT 1 cut(s) 258
HpyCH4V TGCA 3 cut(s) 79, 135, 287
HpyF10VI GCNNNNNNNGC 1 cut(s) 132
HpyF3I CTNAG 1 cut(s) 321
Hsp92II CATG 5 cut(s) 14, 40, 145, 269, 372
Kzo9I GATC 2 cut(s) 58, 67
LguI GCTCTTC 1 cut(s) 9
LpnPI CCDG 8 cut(s) 5, 41, 136, 141, 145, 162, 179, 260
Lsp1109I GCAGC 1 cut(s) 63
LweI GCATC 1 cut(s) 296
MaeI CTAG 3 cut(s) 155, 297, 314
MalI GATC 2 cut(s) 60, 69
MboI GATC 2 cut(s) 58, 67
MboII GAAGA 8 cut(s) 26, 63, 111, 170, 173, 206, 351, 423
MhlI GDGCHC 2 cut(s) 215, 463
MluCI AATT 1 cut(s) 80
MlyI GAGTC 1 cut(s) 169
MnlI CCTC 1 cut(s) 316
Mph1103I ATGCAT 1 cut(s) 289
MseI TTAA 2 cut(s) 260, 475
MslI CAYNNNNRTG 1 cut(s) 218
MspI CCGG 1 cut(s) 247
MspR9I CCNGG 1 cut(s) 248
MwoI GCNNNNNNNGC 1 cut(s) 132
NciI CCSGG 1 cut(s) 248
NcoI CCATGG 1 cut(s) 141
NdeII GATC 2 cut(s) 58, 67
NlaIII CATG 5 cut(s) 14, 40, 145, 269, 372
NlaIV GGNNCC 2 cut(s) 147, 391
NsiI ATGCAT 1 cut(s) 289
NspI RCATGY 1 cut(s) 372
PciSI GCTCTTC 1 cut(s) 9
PcsI WCGNNNNNNNCGW 1 cut(s) 67
PflFI GACNNNGTC 1 cut(s) 178
PkrI GCNGC 1 cut(s) 78
Ple19I CGATCG 1 cut(s) 70
PleI GAGTC 1 cut(s) 169
PpsI GAGTC 1 cut(s) 169
PspN4I GGNNCC 2 cut(s) 147, 391
PspPI GGNCC 1 cut(s) 4
PsyI GACNNNGTC 1 cut(s) 178
PvuI CGATCG 1 cut(s) 70
RsaI GTAC 1 cut(s) 153
RsaNI GTAC 1 cut(s) 152
RseI CAYNNNNRTG 1 cut(s) 218
SapI GCTCTTC 1 cut(s) 9
SaqAI TTAA 2 cut(s) 260, 475
SatI GCNGC 1 cut(s) 77
Sau3AI GATC 2 cut(s) 58, 67
Sau96I GGNCC 1 cut(s) 4
ScaI AGTACT 1 cut(s) 153
SchI GAGTC 1 cut(s) 169
ScrFI CCNGG 1 cut(s) 248
SduI GDGCHC 2 cut(s) 215, 463
SetI ASST 6 cut(s) 235, 296, 302, 391, 452, 458
SfaNI GCATC 1 cut(s) 296
SinI GGWCC 1 cut(s) 4
SmiMI CAYNNNNRTG 1 cut(s) 218
SmlI CTYRAG 1 cut(s) 348
SmoI CTYRAG 1 cut(s) 348
Sse9I AATT 1 cut(s) 80
SspMI CTAG 3 cut(s) 155, 297, 314
StyD4I CCNGG 1 cut(s) 246
StyI CCWWGG 1 cut(s) 141
TaaI ACNGT 1 cut(s) 258
TaqI TCGA 3 cut(s) 66, 240, 463
TasI AATT 1 cut(s) 80
TatI WGTACW 1 cut(s) 151
Tru1I TTAA 2 cut(s) 260, 475
Tru9I TTAA 2 cut(s) 260, 475
TseI GCWGC 1 cut(s) 76
TspDTI ATGAA 1 cut(s) 27
TspGWI ACGGA 1 cut(s) 287
Tth111I GACNNNGTC 1 cut(s) 178
VpaK11BI GGWCC 1 cut(s) 4
XceI RCATGY 1 cut(s) 372
XspI CTAG 3 cut(s) 155, 297, 314
ZrmI AGTACT 1 cut(s) 153
Zsp2I ATGCAT 1 cut(s) 289
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.