Rroxscaffold_2G00145420

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0017215
Physical Location & Seq
Reverse (-)
83371506 .. 83372397
892 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00145420.1

Sequence Viewer

Length: 441 bp
ATGACTTCATCCATGCCTATTCTCCAAAGAATGGACCGCCTCGATCGTTTGCTGCAGTTTCTGGAAGAGAAGCATCGCTTGTCATCCAACTGTTCTTTGAGTTCTAGTACTGCTCCCGCCTGCGAAAGCAGTGAACCTGCCCAAGATCGTGTGTCCTACAAAACACTGTCATCTGCAATTGAAGAAGTACATTGTAAAGGCACGCTGATGGAGCGAGTAGCTATTCTTGAGAGCCGGGTTTTACTGTTAAGCCATGAGATGGATTTAGAAAATGCATCAAGTTCTAGCTGTTCCACGATTCTGGGGTATAAGTCTCCAAAAGAGTGTGTAAGAAAGCCAAAGGGTTGGAGGAAAGCTGGGAGAAGAAGAACAAGAAAAACAAGCATTGTCTCCATCATTCAGCTGAGAGAATGGCTTAGGTGGCCAAGAATGGGATGCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

146

Amino Acids

16.66

Weight (kDa)

9.6

Isoelectric Point (pI)

72.0

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017215)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g09770 FvH4_1g09770
malus_domestica MD15G1227100.v1.1
prunus_persica Prupe.7G188200_v2.0.a1
rosa_laevigata RLG00000016661
rosa_roxburghii Rroxscaffold_2G00145420
rosa_rugosa Rorug02G0059600
rosa_samantha Rh2AG107000 Rh2BG109400 Rh2CG111200 Rh2DG110800 Rh7BG189800
rosa_wichuraiana Rw2G008290

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 145
AccB7I CCANNNNNTGG 2 cut(s) 31, 259
AciI CCGC 2 cut(s) 37, 117
AcoI YGGCCR 1 cut(s) 422
AfaI GTAC 2 cut(s) 109, 189
AfiI CCNNNNNNNGG 3 cut(s) 31, 259, 431
AgsI TTSAA 1 cut(s) 182
AluBI AGCT 4 cut(s) 221, 288, 356, 403
AluI AGCT 4 cut(s) 221, 288, 356, 403
Alw26I GTCTC 2 cut(s) 318, 394
AlwNI CAGNNNCTG 1 cut(s) 61
AoxI GGCC 1 cut(s) 422
ApeKI GCWGC 1 cut(s) 52
AspS9I GGNCC 1 cut(s) 34
AsuC2I CCSGG 1 cut(s) 236
AvaII GGWCC 1 cut(s) 34
BalI TGGCCA 1 cut(s) 424
BbvI GCAGC 1 cut(s) 39
BccI CCATC 3 cut(s) 202, 253, 401
BcnI CCSGG 1 cut(s) 236
BcoDI GTCTC 2 cut(s) 318, 394
BfaI CTAG 2 cut(s) 105, 285
BfmI CTRYAG 1 cut(s) 53
BfuAI ACCTGC 1 cut(s) 145
BisI GCNGC 1 cut(s) 53
BlsI GCNGC 1 cut(s) 54
BmcAI AGTACT 1 cut(s) 109
Bme1390I CCNGG 1 cut(s) 236
Bme18I GGWCC 1 cut(s) 34
BmgT120I GGNCC 1 cut(s) 34
BmrFI CCNGG 1 cut(s) 236
BmsI GCATC 3 cut(s) 82, 284, 425
Bpu10I CCTNAGC 1 cut(s) 416
BpuEI CTTGAG 1 cut(s) 248
BpuMI CCSGG 1 cut(s) 236
Bsc4I CCNNNNNNNGG 3 cut(s) 31, 259, 431
BseGI GGATG 3 cut(s) 8, 83, 440
BseLI CCNNNNNNNGG 3 cut(s) 31, 259, 431
BseMII CTCAG 1 cut(s) 395
BseXI GCAGC 1 cut(s) 39
BseYI CCCAGC 1 cut(s) 356
Bsh1285I CGRYCG 1 cut(s) 46
BshFI GGCC 1 cut(s) 424
BsiEI CGRYCG 1 cut(s) 46
BsiSI CCGG 1 cut(s) 235
BslI CCNNNNNNNGG 3 cut(s) 31, 259, 431
BsmAI GTCTC 2 cut(s) 318, 394
BsnI GGCC 1 cut(s) 424
Bsp143I GATC 2 cut(s) 43, 145
BspACI CCGC 2 cut(s) 37, 117
BspANI GGCC 1 cut(s) 424
BspCNI CTCAG 1 cut(s) 396
BspMAI CTGCAG 1 cut(s) 57
BspMI ACCTGC 1 cut(s) 145
BssMI GATC 2 cut(s) 43, 145
Bst4CI ACNGT 3 cut(s) 92, 168, 246
Bst6I CTCTTC 1 cut(s) 60
BstC8I GCNNGC 2 cut(s) 121, 203
BstDEI CTNAG 2 cut(s) 404, 416
BstF5I GGATG 3 cut(s) 8, 83, 440
BstKTI GATC 2 cut(s) 46, 148
BstMAI GTCTC 2 cut(s) 318, 394
BstMBI GATC 2 cut(s) 43, 145
BstMCI CGRYCG 1 cut(s) 46
BstMWI GCNNNNNNNGC 2 cut(s) 211, 421
BstSCI CCNGG 1 cut(s) 234
BstSFI CTRYAG 1 cut(s) 53
BstV1I GCAGC 1 cut(s) 39
BstXI CCANNNNNNTGG 2 cut(s) 301, 345
BsuRI GGCC 1 cut(s) 424
BtgZI GCGATG 1 cut(s) 59
BtsCI GGATG 3 cut(s) 8, 83, 440
BtsI GCAGTG 1 cut(s) 136
BtsIMutI CAGTG 2 cut(s) 136, 164
BveI ACCTGC 1 cut(s) 145
Cac8I GCNNGC 2 cut(s) 121, 203
CaiI CAGNNNCTG 1 cut(s) 61
Cfr13I GGNCC 1 cut(s) 34
Csp6I GTAC 2 cut(s) 108, 188
CviAII CATG 2 cut(s) 13, 254
CviJI RGCY 9 cut(s) 221, 234, 252, 288, 337, 356, 403, 415, 424
CviKI_1 RGCY 9 cut(s) 221, 234, 252, 288, 337, 356, 403, 415, 424
CviQI GTAC 2 cut(s) 108, 188
DdeI CTNAG 2 cut(s) 404, 416
DpnI GATC 2 cut(s) 45, 147
DpnII GATC 2 cut(s) 43, 145
EaeI YGGCCR 1 cut(s) 422
Eam1104I CTCTTC 1 cut(s) 60
EarI CTCTTC 1 cut(s) 60
Eco47I GGWCC 1 cut(s) 34
EcoT22I ATGCAT 1 cut(s) 277
FaeI CATG 2 cut(s) 16, 257
FaiI YATR 3 cut(s) 14, 255, 309
FalI AAGNNNNNCTT 2 cut(s) 62, 94
FatI CATG 2 cut(s) 12, 253
FauI CCCGC 1 cut(s) 124
Fnu4HI GCNGC 1 cut(s) 53
FokI GGATG 1 cut(s) 70
Fsp4HI GCNGC 1 cut(s) 53
FspBI CTAG 2 cut(s) 105, 285
GluI GCNGC 1 cut(s) 53
GsaI CCCAGC 1 cut(s) 360
HaeIII GGCC 1 cut(s) 424
HapII CCGG 1 cut(s) 235
Hin1II CATG 2 cut(s) 16, 257
HinfI GANTC 1 cut(s) 298
HpaII CCGG 1 cut(s) 235
Hpy166II GTNNAC 1 cut(s) 134
Hpy188III TCNNGA 2 cut(s) 62, 227
Hpy8I GTNNAC 1 cut(s) 134
HpyCH4III ACNGT 3 cut(s) 92, 168, 246
HpyCH4V TGCA 3 cut(s) 55, 176, 275
HpyF10VI GCNNNNNNNGC 2 cut(s) 211, 421
HpyF3I CTNAG 2 cut(s) 404, 416
Hsp92II CATG 2 cut(s) 16, 257
Kzo9I GATC 2 cut(s) 43, 145
LmnI GCTCC 2 cut(s) 118, 211
LpnPI CCDG 6 cut(s) 47, 133, 150, 248, 287, 342
Lsp1109I GCAGC 1 cut(s) 39
LweI GCATC 3 cut(s) 82, 284, 425
MaeI CTAG 2 cut(s) 105, 285
MalI GATC 2 cut(s) 45, 147
MboI GATC 2 cut(s) 43, 145
MboII GAAGA 4 cut(s) 77, 194, 375, 378
MfeI CAATTG 1 cut(s) 177
MlsI TGGCCA 1 cut(s) 424
MluCI AATT 1 cut(s) 177
MluNI TGGCCA 1 cut(s) 424
MmeI TCCRAC 2 cut(s) 111, 326
MnlI CCTC 2 cut(s) 50, 342
Mox20I TGGCCA 1 cut(s) 424
Mph1103I ATGCAT 1 cut(s) 277
MscI TGGCCA 1 cut(s) 424
MseI TTAA 1 cut(s) 248
MslI CAYNNNNRTG 1 cut(s) 206
Msp20I TGGCCA 1 cut(s) 424
MspA1I CMGCKG 1 cut(s) 403
MspI CCGG 1 cut(s) 235
MspR9I CCNGG 1 cut(s) 236
MunI CAATTG 1 cut(s) 177
MwoI GCNNNNNNNGC 2 cut(s) 211, 421
NciI CCSGG 1 cut(s) 236
NdeII GATC 2 cut(s) 43, 145
NlaIII CATG 2 cut(s) 16, 257
NsiI ATGCAT 1 cut(s) 277
PfeI GAWTC 1 cut(s) 298
PflMI CCANNNNNTGG 2 cut(s) 31, 259
PkrI GCNGC 1 cut(s) 54
Ple19I CGATCG 1 cut(s) 46
PspFI CCCAGC 1 cut(s) 356
PspPI GGNCC 1 cut(s) 34
PstI CTGCAG 1 cut(s) 57
PstNI CAGNNNCTG 1 cut(s) 61
PvuI CGATCG 1 cut(s) 46
PvuII CAGCTG 1 cut(s) 403
RsaI GTAC 2 cut(s) 109, 189
RsaNI GTAC 2 cut(s) 108, 188
RseI CAYNNNNRTG 1 cut(s) 206
SaqAI TTAA 1 cut(s) 248
SatI GCNGC 1 cut(s) 53
Sau3AI GATC 2 cut(s) 43, 145
Sau96I GGNCC 1 cut(s) 34
ScaI AGTACT 1 cut(s) 109
ScrFI CCNGG 1 cut(s) 236
SetI ASST 6 cut(s) 139, 223, 290, 358, 405, 422
SfaNI GCATC 3 cut(s) 82, 284, 425
SfcI CTRYAG 1 cut(s) 53
SinI GGWCC 1 cut(s) 34
SmiMI CAYNNNNRTG 1 cut(s) 206
SmlI CTYRAG 1 cut(s) 227
SmoI CTYRAG 1 cut(s) 227
Sse9I AATT 1 cut(s) 177
SsiI CCGC 2 cut(s) 37, 117
SspMI CTAG 2 cut(s) 105, 285
StyD4I CCNGG 1 cut(s) 234
TaaI ACNGT 3 cut(s) 92, 168, 246
TaqI TCGA 1 cut(s) 42
TasI AATT 1 cut(s) 177
TatI WGTACW 2 cut(s) 107, 187
TfiI GAWTC 1 cut(s) 298
Tru1I TTAA 1 cut(s) 248
Tru9I TTAA 1 cut(s) 248
TscAI CASTG 2 cut(s) 136, 171
TseI GCWGC 1 cut(s) 52
TspRI CASTG 2 cut(s) 136, 171
Van91I CCANNNNNTGG 2 cut(s) 31, 259
VpaK11BI GGWCC 1 cut(s) 34
XspI CTAG 2 cut(s) 105, 285
ZrmI AGTACT 1 cut(s) 109
Zsp2I ATGCAT 1 cut(s) 277
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.