FvH4_1g09770

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb1
OG0017215
Physical Location & Seq
Reverse (-)
5314106 .. 5315256
1151 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_1g09770.t1

Sequence Viewer

Length: 492 bp
ATGAGTTCATCCATGCCTATTCTCCAAAGAATGGATCGTCTTGATCGTTTGCTGCAGTTTCTGGAAGAGAAGCATTGCTTGTCATCCAAACATTCTTCTAGTTCTAGTACTACTGCCGCCTGCGAAAGCAGTGAACTTGCACAAGATCGTGAGTCCTACAAGTCTCTGTCATCTGCAATTGAAGAAGTACATTGTAAAGGCACGCTGATTGAGCGAGTTGCTATGCTTGAGAGCCGGGTTCTACAGTTAAGCCTTGAGATGGATTTAGAAAATGCATCAAGCTCTAGCTGTTCCACCTTTCTGGTATCCGATCAGAAATTTGAGCAAGACAAGCAAGATCCTCTACCAAATGGGGAGTATCAATCTTCAAAGGTATGTGTGAGAAAGCCAAAGGGTTTGAGGAAAGCTGGGAAAAGAAGAACAAGAAGGACAAACATTGTCTCCATCATTCAGTCAAGAGAATGGCTTAGGTGGCCAAGAATGGGATGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

164

Amino Acids

18.56

Weight (kDa)

8.97

Isoelectric Point (pI)

81.98

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017215)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g09770 FvH4_1g09770
malus_domestica MD15G1227100.v1.1
prunus_persica Prupe.7G188200_v2.0.a1
rosa_laevigata RLG00000016661
rosa_roxburghii Rroxscaffold_2G00145420
rosa_rugosa Rorug02G0059600
rosa_samantha Rh2AG107000 Rh2BG109400 Rh2CG111200 Rh2DG110800 Rh7BG189800
rosa_wichuraiana Rw2G008290

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 31
AciI CCGC 1 cut(s) 117
AclWI GGATC 2 cut(s) 42, 332
AcoI YGGCCR 1 cut(s) 473
AcsI RAATTY 1 cut(s) 317
AfaI GTAC 2 cut(s) 109, 189
AfiI CCNNNNNNNGG 3 cut(s) 31, 259, 482
AgsI TTSAA 2 cut(s) 182, 369
AluBI AGCT 3 cut(s) 282, 288, 407
AluI AGCT 3 cut(s) 282, 288, 407
Alw26I GTCTC 2 cut(s) 168, 445
AlwI GGATC 2 cut(s) 42, 332
AlwNI CAGNNNCTG 1 cut(s) 61
AoxI GGCC 1 cut(s) 473
ApeKI GCWGC 1 cut(s) 52
ApoI RAATTY 1 cut(s) 317
AsuC2I CCSGG 1 cut(s) 236
BalI TGGCCA 1 cut(s) 475
BbvI GCAGC 1 cut(s) 39
BccI CCATC 2 cut(s) 253, 452
BciVI GTATCC 1 cut(s) 316
BcnI CCSGG 1 cut(s) 236
BcoDI GTCTC 2 cut(s) 168, 445
BfaI CTAG 3 cut(s) 99, 105, 285
BfmI CTRYAG 2 cut(s) 53, 242
BfuI GTATCC 1 cut(s) 316
BisI GCNGC 2 cut(s) 53, 117
BlsI GCNGC 2 cut(s) 54, 118
BmcAI AGTACT 1 cut(s) 109
Bme1390I CCNGG 1 cut(s) 236
BmrFI CCNGG 1 cut(s) 236
BmsI GCATC 2 cut(s) 284, 476
Bpu10I CCTNAGC 1 cut(s) 467
BpuEI CTTGAG 2 cut(s) 248, 275
BpuMI CCSGG 1 cut(s) 236
BsaXI ACNNNNNCTCC 2 cut(s) 425, 455
Bsc4I CCNNNNNNNGG 3 cut(s) 31, 259, 482
Bse3DI GCAATG 1 cut(s) 73
BseGI GGATG 3 cut(s) 8, 83, 491
BseLI CCNNNNNNNGG 3 cut(s) 31, 259, 482
BseMI GCAATG 1 cut(s) 73
BseXI GCAGC 1 cut(s) 39
BseYI CCCAGC 1 cut(s) 407
BshFI GGCC 1 cut(s) 475
BsiSI CCGG 1 cut(s) 235
BslI CCNNNNNNNGG 3 cut(s) 31, 259, 482
BsmAI GTCTC 2 cut(s) 168, 445
BsnI GGCC 1 cut(s) 475
Bsp143I GATC 5 cut(s) 34, 43, 145, 310, 337
BspACI CCGC 1 cut(s) 117
BspANI GGCC 1 cut(s) 475
BspMAI CTGCAG 1 cut(s) 57
BspPI GGATC 2 cut(s) 42, 332
BsrDI GCAATG 1 cut(s) 73
BssMI GATC 5 cut(s) 34, 43, 145, 310, 337
Bst4CI ACNGT 1 cut(s) 246
Bst6I CTCTTC 1 cut(s) 60
BstC8I GCNNGC 2 cut(s) 121, 203
BstDEI CTNAG 1 cut(s) 467
BstF5I GGATG 3 cut(s) 8, 83, 491
BstKTI GATC 5 cut(s) 37, 46, 148, 313, 340
BstMAI GTCTC 2 cut(s) 168, 445
BstMBI GATC 5 cut(s) 34, 43, 145, 310, 337
BstMWI GCNNNNNNNGC 3 cut(s) 211, 331, 472
BstSCI CCNGG 1 cut(s) 234
BstSFI CTRYAG 2 cut(s) 53, 242
BstV1I GCAGC 1 cut(s) 39
BstX2I RGATCY 1 cut(s) 337
BstXI CCANNNNNNTGG 1 cut(s) 301
BstYI RGATCY 1 cut(s) 337
BsuI GTATCC 1 cut(s) 316
BsuRI GGCC 1 cut(s) 475
BtsCI GGATG 3 cut(s) 8, 83, 491
BtsI GCAGTG 1 cut(s) 136
BtsIMutI CAGTG 1 cut(s) 136
Cac8I GCNNGC 2 cut(s) 121, 203
CaiI CAGNNNCTG 1 cut(s) 61
Csp6I GTAC 2 cut(s) 108, 188
CviAII CATG 1 cut(s) 13
CviJI RGCY 8 cut(s) 234, 252, 282, 288, 388, 407, 466, 475
CviKI_1 RGCY 8 cut(s) 234, 252, 282, 288, 388, 407, 466, 475
CviQI GTAC 2 cut(s) 108, 188
DdeI CTNAG 1 cut(s) 467
DpnI GATC 5 cut(s) 36, 45, 147, 312, 339
DpnII GATC 5 cut(s) 34, 43, 145, 310, 337
EaeI YGGCCR 1 cut(s) 473
Eam1104I CTCTTC 1 cut(s) 60
EarI CTCTTC 1 cut(s) 60
EcoT22I ATGCAT 1 cut(s) 277
FaeI CATG 1 cut(s) 16
FaiI YATR 3 cut(s) 14, 224, 376
FalI AAGNNNNNCTT 2 cut(s) 62, 94
FatI CATG 1 cut(s) 12
Fnu4HI GCNGC 2 cut(s) 53, 117
FokI GGATG 1 cut(s) 70
Fsp4HI GCNGC 2 cut(s) 53, 117
FspBI CTAG 3 cut(s) 99, 105, 285
GluI GCNGC 2 cut(s) 53, 117
GsaI CCCAGC 1 cut(s) 411
HaeIII GGCC 1 cut(s) 475
HapII CCGG 1 cut(s) 235
Hin1II CATG 1 cut(s) 16
HinfI GANTC 1 cut(s) 152
HpaII CCGG 1 cut(s) 235
Hpy166II GTNNAC 1 cut(s) 134
Hpy188I TCNGA 2 cut(s) 310, 315
Hpy188III TCNNGA 4 cut(s) 41, 62, 149, 456
Hpy8I GTNNAC 1 cut(s) 134
HpyAV CCTTC 1 cut(s) 420
HpyCH4III ACNGT 1 cut(s) 246
HpyCH4V TGCA 4 cut(s) 55, 140, 176, 275
HpyF10VI GCNNNNNNNGC 3 cut(s) 211, 331, 472
HpyF3I CTNAG 1 cut(s) 467
Hsp92II CATG 1 cut(s) 16
Kzo9I GATC 5 cut(s) 34, 43, 145, 310, 337
LpnPI CCDG 5 cut(s) 47, 133, 248, 287, 393
Lsp1109I GCAGC 1 cut(s) 39
LweI GCATC 2 cut(s) 284, 476
MaeI CTAG 3 cut(s) 99, 105, 285
MalI GATC 5 cut(s) 36, 45, 147, 312, 339
MboI GATC 5 cut(s) 34, 43, 145, 310, 337
MboII GAAGA 5 cut(s) 77, 87, 194, 357, 429
MfeI CAATTG 1 cut(s) 177
MflI RGATCY 1 cut(s) 337
MlsI TGGCCA 1 cut(s) 475
MluCI AATT 2 cut(s) 177, 317
MluNI TGGCCA 1 cut(s) 475
MlyI GAGTC 1 cut(s) 161
MnlI CCTC 2 cut(s) 351, 393
Mox20I TGGCCA 1 cut(s) 475
Mph1103I ATGCAT 1 cut(s) 277
MscI TGGCCA 1 cut(s) 475
MseI TTAA 1 cut(s) 248
Msp20I TGGCCA 1 cut(s) 475
MspI CCGG 1 cut(s) 235
MspR9I CCNGG 1 cut(s) 236
MunI CAATTG 1 cut(s) 177
MwoI GCNNNNNNNGC 3 cut(s) 211, 331, 472
NciI CCSGG 1 cut(s) 236
NdeII GATC 5 cut(s) 34, 43, 145, 310, 337
NlaIII CATG 1 cut(s) 16
NsiI ATGCAT 1 cut(s) 277
PcsI WCGNNNNNNNCGW 1 cut(s) 43
PflMI CCANNNNNTGG 1 cut(s) 31
PkrI GCNGC 2 cut(s) 54, 118
PleI GAGTC 1 cut(s) 160
PpsI GAGTC 1 cut(s) 160
PspFI CCCAGC 1 cut(s) 407
PstI CTGCAG 1 cut(s) 57
PstNI CAGNNNCTG 1 cut(s) 61
PsuI RGATCY 1 cut(s) 337
RsaI GTAC 2 cut(s) 109, 189
RsaNI GTAC 2 cut(s) 108, 188
SaqAI TTAA 1 cut(s) 248
SatI GCNGC 2 cut(s) 53, 117
Sau3AI GATC 5 cut(s) 34, 43, 145, 310, 337
ScaI AGTACT 1 cut(s) 109
SchI GAGTC 1 cut(s) 161
ScrFI CCNGG 1 cut(s) 236
SetI ASST 6 cut(s) 284, 290, 299, 375, 409, 473
SfaNI GCATC 2 cut(s) 284, 476
SfcI CTRYAG 2 cut(s) 53, 242
SmlI CTYRAG 2 cut(s) 227, 254
SmoI CTYRAG 2 cut(s) 227, 254
Sse9I AATT 2 cut(s) 177, 317
SsiI CCGC 1 cut(s) 117
SspMI CTAG 3 cut(s) 99, 105, 285
StyD4I CCNGG 1 cut(s) 234
TaaI ACNGT 1 cut(s) 246
TasI AATT 2 cut(s) 177, 317
TatI WGTACW 2 cut(s) 107, 187
TauI GCSGC 1 cut(s) 119
Tru1I TTAA 1 cut(s) 248
Tru9I TTAA 1 cut(s) 248
TscAI CASTG 1 cut(s) 136
TseI GCWGC 1 cut(s) 52
TspRI CASTG 1 cut(s) 136
Van91I CCANNNNNTGG 1 cut(s) 31
XapI RAATTY 1 cut(s) 317
XspI CTAG 3 cut(s) 99, 105, 285
ZrmI AGTACT 1 cut(s) 109
Zsp2I ATGCAT 1 cut(s) 277
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.