RLG00000016661

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
OG0017215
Physical Location & Seq
Forward (+)
8640524 .. 8641424
901 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000016661

Sequence Viewer

Length: 495 bp
ATGACTTCATCCGTGCCTATTCTCCAAAGAATGGACCGTCTCGATCGTTTGCTGCAGTTTCTGGAAGAGAAGCAATATTGCTTGTCATCCAAGTGTTCTTTGAGTTCTAGTACTGCTCCCGCCTGTGAAAGCAGTGAACCTGCCCAAGATCGTGTGTCCTACAAAACACTGTCATCTGCAATTGAAGAAGTACATTGTAAAGGCACGCTGATGGAGCGAGTAGCTATGCTTGAGAGCCGGGTTTTACAGTTAAGCCATGAGATGGATTTAGAAAATGCATCAAGTTCTAGCTGTTCCACGATTCTGGTATCTGATCAGAAATTTGAGCAAGACAAGCAAGATTCTCTAATAAATGGGGGGTATAAGTCTCCAAAAGAGTGGGTAAGAAAGCCAAAGGGTTGGAAGAAAGCTGGGAGAAGAAGAACAAGAAAAACAAGCATTGTCTCCATCATTCAGCTGAGAGAATGGCTTAGGTGGCCAAGAATGGGATGCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

165

Amino Acids

18.76

Weight (kDa)

9.22

Isoelectric Point (pI)

68.64

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017215)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g09770 FvH4_1g09770
malus_domestica MD15G1227100.v1.1
prunus_persica Prupe.7G188200_v2.0.a1
rosa_laevigata RLG00000016661
rosa_roxburghii Rroxscaffold_2G00145420
rosa_rugosa Rorug02G0059600
rosa_samantha Rh2AG107000 Rh2BG109400 Rh2CG111200 Rh2DG110800 Rh7BG189800
rosa_wichuraiana Rw2G008290

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 148
AccB7I CCANNNNNTGG 2 cut(s) 31, 262
AciI CCGC 1 cut(s) 120
AcoI YGGCCR 1 cut(s) 476
AcsI RAATTY 1 cut(s) 320
AfaI GTAC 2 cut(s) 112, 192
AfiI CCNNNNNNNGG 3 cut(s) 31, 262, 485
AgsI TTSAA 1 cut(s) 185
AluBI AGCT 4 cut(s) 224, 291, 410, 457
AluI AGCT 4 cut(s) 224, 291, 410, 457
Alw26I GTCTC 3 cut(s) 44, 372, 448
AlwNI CAGNNNCTG 1 cut(s) 61
AoxI GGCC 1 cut(s) 476
ApeKI GCWGC 1 cut(s) 52
ApoI RAATTY 1 cut(s) 320
AspS9I GGNCC 1 cut(s) 34
AsuC2I CCSGG 1 cut(s) 239
AvaII GGWCC 1 cut(s) 34
BalI TGGCCA 1 cut(s) 478
BbvI GCAGC 1 cut(s) 39
BccI CCATC 3 cut(s) 205, 256, 455
BclI TGATCA 1 cut(s) 313
BcnI CCSGG 1 cut(s) 239
BcoDI GTCTC 3 cut(s) 44, 372, 448
BfaI CTAG 2 cut(s) 108, 288
BfmI CTRYAG 1 cut(s) 53
BfuAI ACCTGC 1 cut(s) 148
BisI GCNGC 1 cut(s) 53
BlsI GCNGC 1 cut(s) 54
BmcAI AGTACT 1 cut(s) 112
Bme1390I CCNGG 1 cut(s) 239
Bme18I GGWCC 1 cut(s) 34
BmgT120I GGNCC 1 cut(s) 34
BmrFI CCNGG 1 cut(s) 239
BmsI GCATC 2 cut(s) 287, 479
Bpu10I CCTNAGC 1 cut(s) 470
BpuEI CTTGAG 1 cut(s) 251
BpuMI CCSGG 1 cut(s) 239
Bsc4I CCNNNNNNNGG 3 cut(s) 31, 262, 485
BseGI GGATG 3 cut(s) 8, 86, 494
BseLI CCNNNNNNNGG 3 cut(s) 31, 262, 485
BseMII CTCAG 1 cut(s) 449
BseXI GCAGC 1 cut(s) 39
BseYI CCCAGC 1 cut(s) 410
Bsh1285I CGRYCG 1 cut(s) 46
BshFI GGCC 1 cut(s) 478
BsiEI CGRYCG 1 cut(s) 46
BsiSI CCGG 1 cut(s) 238
BslI CCNNNNNNNGG 3 cut(s) 31, 262, 485
BsmAI GTCTC 3 cut(s) 44, 372, 448
BsmBI CGTCTC 1 cut(s) 44
BsnI GGCC 1 cut(s) 478
Bsp143I GATC 3 cut(s) 43, 148, 313
BspACI CCGC 1 cut(s) 120
BspANI GGCC 1 cut(s) 478
BspCNI CTCAG 1 cut(s) 450
BspMAI CTGCAG 1 cut(s) 57
BspMI ACCTGC 1 cut(s) 148
BssMI GATC 3 cut(s) 43, 148, 313
Bst4CI ACNGT 3 cut(s) 38, 171, 249
Bst6I CTCTTC 1 cut(s) 60
BstC8I GCNNGC 1 cut(s) 206
BstDEI CTNAG 2 cut(s) 458, 470
BstF5I GGATG 3 cut(s) 8, 86, 494
BstKTI GATC 3 cut(s) 46, 151, 316
BstMAI GTCTC 3 cut(s) 44, 372, 448
BstMBI GATC 3 cut(s) 43, 148, 313
BstMCI CGRYCG 1 cut(s) 46
BstMWI GCNNNNNNNGC 3 cut(s) 214, 334, 475
BstSCI CCNGG 1 cut(s) 237
BstSFI CTRYAG 1 cut(s) 53
BstV1I GCAGC 1 cut(s) 39
BstXI CCANNNNNNTGG 3 cut(s) 304, 378, 399
BsuRI GGCC 1 cut(s) 478
BtsCI GGATG 3 cut(s) 8, 86, 494
BtsI GCAGTG 1 cut(s) 139
BtsIMutI CAGTG 2 cut(s) 139, 167
BveI ACCTGC 1 cut(s) 148
Cac8I GCNNGC 1 cut(s) 206
CaiI CAGNNNCTG 1 cut(s) 61
Cfr13I GGNCC 1 cut(s) 34
Csp6I GTAC 2 cut(s) 111, 191
CviAII CATG 1 cut(s) 257
CviJI RGCY 9 cut(s) 224, 237, 255, 291, 391, 410, 457, 469, 478
CviKI_1 RGCY 9 cut(s) 224, 237, 255, 291, 391, 410, 457, 469, 478
CviQI GTAC 2 cut(s) 111, 191
DdeI CTNAG 2 cut(s) 458, 470
DpnI GATC 3 cut(s) 45, 150, 315
DpnII GATC 3 cut(s) 43, 148, 313
EaeI YGGCCR 1 cut(s) 476
Eam1104I CTCTTC 1 cut(s) 60
EarI CTCTTC 1 cut(s) 60
Eco47I GGWCC 1 cut(s) 34
EcoT22I ATGCAT 1 cut(s) 280
Esp3I CGTCTC 1 cut(s) 44
FaeI CATG 1 cut(s) 260
FaiI YATR 3 cut(s) 227, 258, 363
FatI CATG 1 cut(s) 256
FauI CCCGC 1 cut(s) 127
FbaI TGATCA 1 cut(s) 313
Fnu4HI GCNGC 1 cut(s) 53
FokI GGATG 1 cut(s) 73
Fsp4HI GCNGC 1 cut(s) 53
FspBI CTAG 2 cut(s) 108, 288
GluI GCNGC 1 cut(s) 53
GsaI CCCAGC 1 cut(s) 414
HaeIII GGCC 1 cut(s) 478
HapII CCGG 1 cut(s) 238
Hin1II CATG 1 cut(s) 260
HinfI GANTC 2 cut(s) 301, 341
HpaII CCGG 1 cut(s) 238
Hpy166II GTNNAC 1 cut(s) 137
Hpy188I TCNGA 2 cut(s) 313, 318
Hpy188III TCNNGA 2 cut(s) 41, 62
Hpy8I GTNNAC 1 cut(s) 137
HpyCH4III ACNGT 3 cut(s) 38, 171, 249
HpyCH4V TGCA 3 cut(s) 55, 179, 278
HpyF10VI GCNNNNNNNGC 3 cut(s) 214, 334, 475
HpyF3I CTNAG 2 cut(s) 458, 470
Hsp92II CATG 1 cut(s) 260
Ksp22I TGATCA 1 cut(s) 313
Kzo9I GATC 3 cut(s) 43, 148, 313
LmnI GCTCC 2 cut(s) 121, 214
LpnPI CCDG 6 cut(s) 47, 136, 153, 251, 290, 396
Lsp1109I GCAGC 1 cut(s) 39
LweI GCATC 2 cut(s) 287, 479
MaeI CTAG 2 cut(s) 108, 288
MalI GATC 3 cut(s) 45, 150, 315
MboI GATC 3 cut(s) 43, 148, 313
MboII GAAGA 5 cut(s) 77, 197, 415, 429, 432
MfeI CAATTG 1 cut(s) 180
MlsI TGGCCA 1 cut(s) 478
MluCI AATT 2 cut(s) 180, 320
MluNI TGGCCA 1 cut(s) 478
MmeI TCCRAC 1 cut(s) 380
Mox20I TGGCCA 1 cut(s) 478
Mph1103I ATGCAT 1 cut(s) 280
MscI TGGCCA 1 cut(s) 478
MseI TTAA 1 cut(s) 251
MslI CAYNNNNRTG 2 cut(s) 91, 209
Msp20I TGGCCA 1 cut(s) 478
MspA1I CMGCKG 1 cut(s) 457
MspI CCGG 1 cut(s) 238
MspR9I CCNGG 1 cut(s) 239
MunI CAATTG 1 cut(s) 180
MwoI GCNNNNNNNGC 3 cut(s) 214, 334, 475
NciI CCSGG 1 cut(s) 239
NdeII GATC 3 cut(s) 43, 148, 313
NlaIII CATG 1 cut(s) 260
NsiI ATGCAT 1 cut(s) 280
PfeI GAWTC 2 cut(s) 301, 341
PflMI CCANNNNNTGG 2 cut(s) 31, 262
PkrI GCNGC 1 cut(s) 54
Ple19I CGATCG 1 cut(s) 46
PspFI CCCAGC 1 cut(s) 410
PspPI GGNCC 1 cut(s) 34
PstI CTGCAG 1 cut(s) 57
PstNI CAGNNNCTG 1 cut(s) 61
PvuI CGATCG 1 cut(s) 46
PvuII CAGCTG 1 cut(s) 457
RsaI GTAC 2 cut(s) 112, 192
RsaNI GTAC 2 cut(s) 111, 191
RseI CAYNNNNRTG 2 cut(s) 91, 209
SaqAI TTAA 1 cut(s) 251
SatI GCNGC 1 cut(s) 53
Sau3AI GATC 3 cut(s) 43, 148, 313
Sau96I GGNCC 1 cut(s) 34
ScaI AGTACT 1 cut(s) 112
ScrFI CCNGG 1 cut(s) 239
SetI ASST 6 cut(s) 142, 226, 293, 412, 459, 476
SfaNI GCATC 2 cut(s) 287, 479
SfcI CTRYAG 1 cut(s) 53
SinI GGWCC 1 cut(s) 34
SmiMI CAYNNNNRTG 2 cut(s) 91, 209
SmlI CTYRAG 1 cut(s) 230
SmoI CTYRAG 1 cut(s) 230
Sse9I AATT 2 cut(s) 180, 320
SsiI CCGC 1 cut(s) 120
SspI AATATT 1 cut(s) 77
SspMI CTAG 2 cut(s) 108, 288
StyD4I CCNGG 1 cut(s) 237
TaaI ACNGT 3 cut(s) 38, 171, 249
TaqI TCGA 1 cut(s) 42
TasI AATT 2 cut(s) 180, 320
TatI WGTACW 2 cut(s) 110, 190
TfiI GAWTC 2 cut(s) 301, 341
Tru1I TTAA 1 cut(s) 251
Tru9I TTAA 1 cut(s) 251
TscAI CASTG 2 cut(s) 139, 174
TseI GCWGC 1 cut(s) 52
TspRI CASTG 2 cut(s) 139, 174
Van91I CCANNNNNTGG 2 cut(s) 31, 262
VpaK11BI GGWCC 1 cut(s) 34
XapI RAATTY 1 cut(s) 320
XspI CTAG 2 cut(s) 108, 288
ZrmI AGTACT 1 cut(s) 112
Zsp2I ATGCAT 1 cut(s) 280
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.